Wall clock time and date at job start Mon Mar 30 2020 04:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00132 * 2 1 4 4 H 1.09006 * 109.52793 * 35.10040 * 3 2 1 5 5 C 1.53117 * 109.50380 * 275.00413 * 3 2 1 6 6 C 1.53114 * 109.21172 * 182.36901 * 5 3 2 7 7 C 1.53168 * 109.20718 * 57.62297 * 6 5 3 8 8 N 1.46839 * 109.55913 * 300.85912 * 7 6 5 9 9 C 1.46900 * 111.00240 * 185.83941 * 8 7 6 10 10 C 1.52999 * 109.47304 * 52.14496 * 9 8 7 11 11 O 1.42891 * 109.47132 * 62.29167 * 10 9 8 12 12 C 1.42897 * 114.00331 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47581 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99565 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99973 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00361 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99694 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47106 * 90.00447 * 17 15 13 19 19 H 1.48503 * 109.47169 * 210.00346 * 17 15 13 20 20 H 1.48492 * 109.47352 * 330.00317 * 17 15 13 21 21 C 1.46849 * 111.19765 * 61.74489 * 8 7 6 22 22 H 1.09006 * 109.46997 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46880 * 299.99691 * 1 2 3 24 24 H 1.09000 * 109.47156 * 60.00170 * 1 2 3 25 25 H 1.00901 * 111.00538 * 123.95753 * 2 1 3 26 26 H 1.08993 * 109.52576 * 302.30677 * 5 3 2 27 27 H 1.09001 * 109.52209 * 62.43450 * 5 3 2 28 28 H 1.09004 * 109.50607 * 177.62565 * 6 5 3 29 29 H 1.09007 * 109.50692 * 297.74546 * 6 5 3 30 30 H 1.09003 * 109.44540 * 180.83288 * 7 6 5 31 31 H 1.09002 * 109.43617 * 60.88638 * 7 6 5 32 32 H 1.09005 * 109.47389 * 172.14863 * 9 8 7 33 33 H 1.09006 * 109.47015 * 292.14615 * 9 8 7 34 34 H 1.08994 * 109.47467 * 182.29697 * 10 9 8 35 35 H 1.09002 * 109.46561 * 302.29375 * 10 9 8 36 36 H 1.09001 * 109.47527 * 300.00877 * 12 11 10 37 37 H 1.09000 * 109.46816 * 60.00309 * 12 11 10 38 38 H 0.97003 * 120.00344 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.46317 * 178.24305 * 21 8 7 40 40 H 1.09002 * 109.46549 * 58.27075 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3414 2.0129 0.5907 5 6 2.0612 1.8938 -1.4378 6 6 2.6657 3.3006 -1.4357 7 6 4.0527 3.2520 -0.7876 8 7 3.9360 2.7466 0.5861 9 6 5.2266 2.8168 1.2843 10 6 5.7945 4.2325 1.1654 11 8 4.9087 5.1559 1.8014 12 6 5.3487 6.5144 1.7477 13 6 4.3449 7.3957 2.4454 14 1 3.4596 6.9616 2.8861 15 6 4.5572 8.7558 2.5218 16 7 5.6354 9.2843 1.9856 17 14 3.3131 9.8480 3.3873 18 1 3.6700 9.9625 4.8243 19 1 3.3219 11.1969 2.7661 20 1 1.9586 9.2531 3.2595 21 6 3.4011 1.3792 0.6051 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8307 -0.5262 0.7813 26 1 2.6839 1.2307 -2.0382 27 1 1.0563 1.9298 -1.8585 28 1 2.7537 3.6605 -2.4608 29 1 2.0222 3.9724 -0.8675 30 1 4.4806 4.2544 -0.7707 31 1 4.6995 2.5908 -1.3643 32 1 5.0845 2.5694 2.3364 33 1 5.9218 2.1075 0.8350 34 1 6.7708 4.2741 1.6483 35 1 5.8984 4.4950 0.1126 36 1 6.3157 6.6031 2.2429 37 1 5.4437 6.8246 0.7071 38 1 5.7846 10.2413 2.0391 39 1 3.3557 1.0212 1.6337 40 1 4.0511 0.7267 0.0220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385220323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:33 Heat of formation + Delta-G solvation = -46.835792 kcal Electronic energy + Delta-G solvation = -17987.664040 eV Core-core repulsion = 15223.100351 eV Total energy + Delta-G solvation = -2764.563689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.29795 -36.87734 -35.43341 -32.98209 -32.44475 -30.04557 -28.54160 -26.71978 -25.31082 -23.48831 -22.69623 -22.24676 -20.52891 -19.59493 -16.46012 -16.25588 -15.85388 -15.57061 -15.14688 -14.66606 -14.41113 -14.24423 -14.00959 -13.55875 -13.31439 -13.04411 -12.73073 -12.42344 -12.06264 -11.87928 -11.63945 -11.32682 -11.12971 -10.81722 -10.76311 -10.67461 -10.62239 -10.28962 -10.19428 -9.88329 -9.05075 -8.75752 -8.61428 -8.11390 -8.01097 -6.07066 -4.07922 3.32858 3.37682 3.43692 3.78081 4.34345 4.40540 4.72884 4.91472 4.94741 5.17430 5.20485 5.29168 5.29516 5.35742 5.43301 5.52733 5.58048 5.62255 5.70162 5.76403 5.82093 5.91233 6.04533 6.05345 6.09905 6.11944 6.30777 6.34352 6.48744 6.86183 7.13855 7.16146 7.32070 7.37192 7.47294 7.84882 8.20942 8.65579 9.06858 9.56881 11.04650 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028328 B = 0.004808 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.177777 B = 5821.792032 C = 6244.219269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.693 5.693 3 C 0.087 3.913 4 H 0.056 0.944 5 C -0.105 4.105 6 C -0.117 4.117 7 C 0.052 3.948 8 N -0.521 5.521 9 C 0.063 3.937 10 C 0.061 3.939 11 O -0.379 6.379 12 C 0.194 3.806 13 C -0.510 4.510 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.057 3.943 22 H 0.064 0.936 23 H 0.023 0.977 24 H 0.064 0.936 25 H 0.339 0.661 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.069 0.931 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -16.928 -5.591 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.324 5.324 3 C -0.022 4.022 4 H 0.074 0.926 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.076 4.076 8 N -0.246 5.246 9 C -0.064 4.064 10 C -0.017 4.017 11 O -0.298 6.298 12 C 0.119 3.881 13 C -0.548 4.548 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.072 4.072 22 H 0.083 0.917 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.157 0.843 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.485 -16.574 -5.957 18.446 hybrid contribution 0.147 0.521 0.789 0.957 sum -5.338 -16.052 -5.169 17.689 Atomic orbital electron populations 1.22217 0.87789 1.01499 1.00616 1.60456 1.07830 1.14337 1.49736 1.21569 0.95288 0.88559 0.96834 0.92559 1.21550 1.00763 0.96175 0.95794 1.21604 0.96762 0.96867 1.00336 1.22214 0.96746 1.00936 0.87683 1.61741 1.26614 1.20209 1.16081 1.22126 0.88907 0.95865 0.99529 1.22348 0.93108 0.89607 0.96671 1.87967 1.46449 1.18316 1.77069 1.20181 0.95350 0.76714 0.95839 1.21062 1.07119 0.91182 1.35454 0.91533 1.24938 0.95956 0.97778 0.95848 1.69963 1.26557 1.12283 1.45204 0.86357 0.81435 0.79358 0.79467 1.20518 1.21134 1.19622 1.22147 0.95066 0.89911 1.00030 0.91671 0.95821 0.91710 0.84306 0.91898 0.92339 0.91454 0.90706 0.89427 0.95607 0.90145 0.94507 0.94218 0.94326 0.98021 0.97953 0.92743 0.91228 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.50 60.06 0.63 0.89 16 2 N -0.69 -7.15 6.66 -113.91 -0.76 -7.91 16 3 C 0.09 1.06 2.65 -67.63 -0.18 0.88 16 4 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 5 C -0.10 -1.25 5.49 -26.61 -0.15 -1.40 16 6 C -0.12 -1.57 6.11 -26.59 -0.16 -1.73 16 7 C 0.05 0.77 5.05 -3.77 -0.02 0.75 16 8 N -0.52 -8.15 4.67 -234.59 -1.10 -9.24 16 9 C 0.06 0.98 5.52 -3.82 -0.02 0.96 16 10 C 0.06 1.14 5.57 37.16 0.21 1.35 16 11 O -0.38 -9.31 10.23 -35.23 -0.36 -9.67 16 12 C 0.19 5.39 5.69 36.01 0.20 5.60 16 13 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 14 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 17 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.06 0.73 4.73 -3.83 -0.02 0.71 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.21 8.06 -51.93 -0.42 -0.20 16 24 H 0.06 0.59 7.49 -51.93 -0.39 0.20 16 25 H 0.34 3.07 8.44 -39.29 -0.33 2.73 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.09 1.49 5.79 -51.93 -0.30 1.19 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.71 6.05 -51.93 -0.31 0.39 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 316.86 15.07 4.77 4.77 Total: -1.00 -31.54 316.86 -8.82 -40.36 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -7.17 Total: -2.87 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.07 Total: -6.06 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.12 Total: -43.66 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.36 Total: -9.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.54 -8.82 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.477 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds