Wall clock time and date at job start Mon Mar 30 2020 04:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00132 * 2 1 4 4 H 1.09006 * 109.52793 * 35.10040 * 3 2 1 5 5 C 1.53117 * 109.50380 * 275.00413 * 3 2 1 6 6 C 1.53114 * 109.21172 * 182.36901 * 5 3 2 7 7 C 1.53168 * 109.20718 * 57.62297 * 6 5 3 8 8 N 1.46839 * 109.55913 * 300.85912 * 7 6 5 9 9 C 1.46900 * 111.00240 * 185.83941 * 8 7 6 10 10 C 1.52999 * 109.47304 * 52.14496 * 9 8 7 11 11 O 1.42891 * 109.47132 * 62.29167 * 10 9 8 12 12 C 1.42897 * 114.00331 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47581 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99565 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99973 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00361 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99694 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47106 * 90.00447 * 17 15 13 19 19 H 1.48503 * 109.47169 * 210.00346 * 17 15 13 20 20 H 1.48492 * 109.47352 * 330.00317 * 17 15 13 21 21 C 1.46849 * 111.19765 * 61.74489 * 8 7 6 22 22 H 1.09006 * 109.46997 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46880 * 299.99691 * 1 2 3 24 24 H 1.09000 * 109.47156 * 60.00170 * 1 2 3 25 25 H 1.00901 * 111.00538 * 123.95753 * 2 1 3 26 26 H 1.08993 * 109.52576 * 302.30677 * 5 3 2 27 27 H 1.09001 * 109.52209 * 62.43450 * 5 3 2 28 28 H 1.09004 * 109.50607 * 177.62565 * 6 5 3 29 29 H 1.09007 * 109.50692 * 297.74546 * 6 5 3 30 30 H 1.09003 * 109.44540 * 180.83288 * 7 6 5 31 31 H 1.09002 * 109.43617 * 60.88638 * 7 6 5 32 32 H 1.09005 * 109.47389 * 172.14863 * 9 8 7 33 33 H 1.09006 * 109.47015 * 292.14615 * 9 8 7 34 34 H 1.08994 * 109.47467 * 182.29697 * 10 9 8 35 35 H 1.09002 * 109.46561 * 302.29375 * 10 9 8 36 36 H 1.09001 * 109.47527 * 300.00877 * 12 11 10 37 37 H 1.09000 * 109.46816 * 60.00309 * 12 11 10 38 38 H 0.97003 * 120.00344 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.46317 * 178.24305 * 21 8 7 40 40 H 1.09002 * 109.46549 * 58.27075 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3414 2.0129 0.5907 5 6 2.0612 1.8938 -1.4378 6 6 2.6657 3.3006 -1.4357 7 6 4.0527 3.2520 -0.7876 8 7 3.9360 2.7466 0.5861 9 6 5.2266 2.8168 1.2843 10 6 5.7945 4.2325 1.1654 11 8 4.9087 5.1559 1.8014 12 6 5.3487 6.5144 1.7477 13 6 4.3449 7.3957 2.4454 14 1 3.4596 6.9616 2.8861 15 6 4.5572 8.7558 2.5218 16 7 5.6354 9.2843 1.9856 17 14 3.3131 9.8480 3.3873 18 1 3.6700 9.9625 4.8243 19 1 3.3219 11.1969 2.7661 20 1 1.9586 9.2531 3.2595 21 6 3.4011 1.3792 0.6051 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8307 -0.5262 0.7813 26 1 2.6839 1.2307 -2.0382 27 1 1.0563 1.9298 -1.8585 28 1 2.7537 3.6605 -2.4608 29 1 2.0222 3.9724 -0.8675 30 1 4.4806 4.2544 -0.7707 31 1 4.6995 2.5908 -1.3643 32 1 5.0845 2.5694 2.3364 33 1 5.9218 2.1075 0.8350 34 1 6.7708 4.2741 1.6483 35 1 5.8984 4.4950 0.1126 36 1 6.3157 6.6031 2.2429 37 1 5.4437 6.8246 0.7071 38 1 5.7846 10.2413 2.0391 39 1 3.3557 1.0212 1.6337 40 1 4.0511 0.7267 0.0220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385220323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:33 Heat of formation + Delta-G solvation = -70.489750 kcal Electronic energy + Delta-G solvation = -17988.689753 eV Core-core repulsion = 15223.100351 eV Total energy + Delta-G solvation = -2765.589402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41613 -38.52542 -36.62393 -34.92645 -33.83376 -31.19963 -30.00922 -28.65382 -26.26439 -24.69052 -24.37923 -23.77590 -21.75718 -20.66361 -18.61456 -17.59906 -17.38093 -16.87810 -16.40708 -16.13512 -15.87868 -15.50103 -15.29444 -15.03092 -14.56659 -14.23804 -13.93418 -13.65833 -13.49572 -13.30992 -13.00056 -12.78761 -12.69665 -12.39979 -12.34412 -12.21758 -11.92632 -11.71590 -11.39332 -11.29388 -11.19499 -10.83751 -10.17137 -9.45327 -9.16391 -8.31668 -6.43506 1.39339 1.42231 1.54442 2.35067 2.75074 3.02044 3.20075 3.45635 3.77224 3.90211 4.06743 4.12981 4.24889 4.31178 4.39145 4.45527 4.55232 4.59702 4.62211 4.63376 4.71888 4.81139 4.82983 4.96465 4.98485 5.00817 5.02877 5.09775 5.19184 5.22474 5.41834 5.55823 5.96522 5.97735 6.13177 6.23710 6.46960 6.57038 6.86209 7.28758 8.80762 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028328 B = 0.004808 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.177777 B = 5821.792032 C = 6244.219269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.092 3.908 4 H 0.034 0.966 5 C -0.097 4.097 6 C -0.115 4.115 7 C 0.054 3.946 8 N -0.548 5.548 9 C 0.071 3.929 10 C 0.051 3.949 11 O -0.394 6.394 12 C 0.210 3.790 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.982 3.018 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.266 1.266 21 C 0.062 3.938 22 H 0.083 0.917 23 H 0.019 0.981 24 H 0.062 0.938 25 H 0.348 0.652 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.042 0.958 36 H -0.016 1.016 37 H -0.017 1.017 38 H 0.271 0.729 39 H 0.076 0.924 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -17.982 -5.562 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.018 4.018 4 H 0.052 0.948 5 C -0.135 4.135 6 C -0.153 4.153 7 C -0.074 4.074 8 N -0.274 5.274 9 C -0.056 4.056 10 C -0.026 4.026 11 O -0.313 6.313 12 C 0.134 3.866 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.804 3.196 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.191 1.191 21 C -0.066 4.066 22 H 0.102 0.898 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.166 0.834 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.302 -17.660 -5.932 19.667 hybrid contribution 0.448 0.781 0.739 1.164 sum -5.855 -16.879 -5.193 18.605 Atomic orbital electron populations 1.22266 0.86940 1.02629 1.00318 1.60461 1.08632 1.12990 1.50186 1.21453 0.94657 0.89285 0.96451 0.94810 1.21478 1.01113 0.95051 0.95879 1.21578 0.95616 0.97556 1.00553 1.22148 0.97673 0.99652 0.87926 1.61700 1.26846 1.22339 1.16502 1.22054 0.89738 0.93809 1.00005 1.22693 0.93036 0.90353 0.96524 1.87919 1.48099 1.17400 1.77927 1.19784 0.94155 0.78562 0.94058 1.21366 1.07595 0.92487 1.36846 0.92324 1.25932 0.98049 0.99017 0.96086 1.70065 1.28192 1.13121 1.45671 0.85208 0.78536 0.77258 0.78563 1.19209 1.19802 1.19060 1.22152 0.95294 0.88392 1.00796 0.89810 0.96208 0.91956 0.83365 0.91193 0.91638 0.90029 0.93170 0.92380 0.93851 0.90152 0.91250 0.93388 0.93948 0.99879 0.99977 0.92059 0.90519 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.50 127.69 1.34 1.79 16 2 N -0.69 -12.84 6.66 -514.32 -3.43 -16.26 16 3 C 0.09 2.10 2.65 44.97 0.12 2.22 16 4 H 0.03 0.93 7.80 -2.38 -0.02 0.91 16 5 C -0.10 -2.18 5.49 30.67 0.17 -2.01 16 6 C -0.11 -3.03 6.11 30.69 0.19 -2.84 16 7 C 0.05 1.57 5.05 86.37 0.44 2.01 16 8 N -0.55 -16.72 4.67 -896.10 -4.18 -20.91 16 9 C 0.07 2.13 5.52 86.30 0.48 2.61 16 10 C 0.05 1.94 5.57 71.98 0.40 2.34 16 11 O -0.39 -19.92 10.23 -148.98 -1.52 -21.44 16 12 C 0.21 12.12 5.69 71.24 0.41 12.53 16 13 C -0.55 -33.41 9.43 25.60 0.24 -33.16 16 14 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.01 0.44 5.46 84.66 0.46 0.90 16 16 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 17 Si 0.98 45.25 29.54 68.60 2.03 47.28 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.06 1.46 4.73 86.32 0.41 1.87 16 22 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.02 0.33 8.06 -2.39 -0.02 0.31 16 24 H 0.06 1.04 7.49 -2.39 -0.02 1.02 16 25 H 0.35 5.49 8.44 -89.69 -0.76 4.73 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.38 7.52 -2.39 -0.02 1.37 16 28 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.06 2.03 5.79 -2.39 -0.01 2.01 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.58 6.05 -2.39 -0.01 1.57 16 36 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 37 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -67.95 316.86 -1.94 -69.89 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.24 Total: 9.72 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.65 Total: -11.74 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -7.33 Total: -93.71 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.52 Total: -21.44 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.95 -1.94 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.599 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds