Wall clock time and date at job start Mon Mar 30 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.47018 * 2 1 4 4 C 1.46900 * 111.00035 * 287.77955 * 3 2 1 5 5 C 1.52998 * 109.47008 * 161.39298 * 4 3 2 6 6 O 1.42903 * 109.46939 * 67.54252 * 5 4 3 7 7 C 1.42901 * 114.00094 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47010 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00276 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99750 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99946 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99902 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47633 * 89.99751 * 12 10 8 14 14 H 1.48506 * 109.47046 * 209.99835 * 12 10 8 15 15 H 1.48502 * 109.47409 * 329.99598 * 12 10 8 16 16 C 1.46903 * 110.99683 * 163.82692 * 3 2 1 17 17 H 1.08998 * 110.28667 * 175.61063 * 16 3 2 18 18 C 1.54254 * 110.32321 * 297.73431 * 16 3 2 19 19 C 1.54385 * 105.05893 * 118.89772 * 18 16 3 20 20 N 1.48562 * 104.59333 * 23.85137 * 19 18 16 21 21 C 1.48552 * 104.22273 * 320.51870 * 20 19 18 22 22 H 1.09001 * 109.46869 * 59.75218 * 1 2 3 23 23 H 1.09000 * 109.47200 * 179.75638 * 1 2 3 24 24 H 1.09001 * 109.46986 * 299.75856 * 1 2 3 25 25 H 1.09004 * 109.47044 * 119.99937 * 2 1 3 26 26 H 1.09000 * 109.46941 * 239.99708 * 2 1 3 27 27 H 1.09000 * 109.46891 * 281.39684 * 4 3 2 28 28 H 1.09002 * 109.46734 * 41.39697 * 4 3 2 29 29 H 1.08996 * 109.46911 * 187.53593 * 5 4 3 30 30 H 1.08992 * 109.47576 * 307.54293 * 5 4 3 31 31 H 1.08999 * 109.46848 * 299.99689 * 7 6 5 32 32 H 1.08995 * 109.47408 * 59.99706 * 7 6 5 33 33 H 0.97008 * 120.00035 * 180.02562 * 11 10 8 34 34 H 1.08998 * 110.32951 * 237.79320 * 18 16 3 35 35 H 1.09001 * 110.33210 * 359.90343 * 18 16 3 36 36 H 1.08999 * 110.41105 * 142.63099 * 19 18 16 37 37 H 1.09000 * 110.41631 * 264.95457 * 19 18 16 38 38 H 1.00896 * 110.99867 * 200.95337 * 20 19 18 39 39 H 1.09000 * 110.41158 * 280.70393 * 21 20 19 40 40 H 1.09002 * 110.41712 * 158.25873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8004 2.0210 -1.3059 5 6 1.8774 3.5412 -1.1522 6 8 3.2162 3.9197 -0.8255 7 6 3.3983 5.3273 -0.6596 8 6 4.8388 5.6108 -0.3198 9 1 5.5446 4.7975 -0.2383 10 6 5.2555 6.9086 -0.1120 11 7 4.3959 7.8990 -0.2108 12 14 7.0409 7.2601 0.3099 13 1 7.8119 7.4757 -0.9408 14 1 7.1191 8.4781 1.1558 15 1 7.6111 6.1059 1.0501 16 6 3.4370 1.4423 0.3820 17 1 3.8087 2.4639 0.3034 18 6 3.6266 0.9122 1.8182 19 6 4.5592 -0.3097 1.6749 20 7 5.2945 -0.0727 0.4060 21 6 4.2710 0.4960 -0.5082 22 1 -0.3633 0.5177 -0.8878 23 1 -0.3633 -1.0276 -0.0044 24 1 -0.3633 0.5101 0.8922 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.5664 1.6871 -2.0058 28 1 0.8165 1.7435 -1.6844 29 1 1.5838 4.0164 -2.0882 30 1 1.2051 3.8605 -0.3560 31 1 3.1362 5.8391 -1.5856 32 1 2.7574 5.6840 0.1466 33 1 4.6891 8.8121 -0.0650 34 1 4.0930 1.6730 2.4441 35 1 2.6679 0.6112 2.2404 36 1 5.2539 -0.3582 2.5135 37 1 3.9756 -1.2282 1.6123 38 1 5.6687 -0.9347 0.0385 39 1 3.6421 -0.2961 -0.9146 40 1 4.7485 1.0543 -1.3134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385226469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:06 Heat of formation + Delta-G solvation = -37.907701 kcal Electronic energy + Delta-G solvation = -18556.917089 eV Core-core repulsion = 15792.740551 eV Total energy + Delta-G solvation = -2764.176538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50319 -36.78225 -35.45720 -32.69617 -31.01629 -30.04075 -28.74271 -27.09351 -25.97019 -22.74339 -22.39156 -21.97280 -20.85110 -18.92759 -16.81793 -16.34264 -16.07374 -15.44135 -15.05424 -14.84979 -14.49242 -14.10006 -13.71593 -13.25870 -13.02953 -12.44994 -12.19109 -12.14218 -11.97726 -11.80045 -11.62783 -11.21222 -11.16049 -10.93960 -10.92629 -10.71223 -10.68276 -10.38717 -10.21179 -9.76994 -9.02684 -8.73692 -8.47556 -8.10796 -8.00202 -6.06161 -4.07377 3.34314 3.39344 3.45740 4.00758 4.39500 4.53643 4.89155 4.92169 5.02498 5.05100 5.23973 5.28343 5.30672 5.39139 5.48906 5.59589 5.71309 5.73567 5.77899 5.86645 5.95179 6.01792 6.09206 6.13366 6.19466 6.26440 6.36454 6.47116 6.68113 6.96221 7.17468 7.35628 7.44256 7.44698 7.51095 7.84700 8.20915 8.62547 9.06617 9.57526 11.05351 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.006508 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.960067 B = 4301.566664 C = 5118.344805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 N -0.523 5.523 4 C 0.056 3.944 5 C 0.067 3.933 6 O -0.391 6.391 7 C 0.195 3.805 8 C -0.512 4.512 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.271 1.271 16 C 0.071 3.929 17 H 0.140 0.860 18 C -0.119 4.119 19 C 0.034 3.966 20 N -0.659 5.659 21 C 0.006 3.994 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.329 0.671 39 H 0.035 0.965 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -16.560 0.515 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 N -0.246 5.246 4 C -0.071 4.071 5 C -0.011 4.011 6 O -0.312 6.312 7 C 0.121 3.879 8 C -0.550 4.550 9 H 0.085 0.915 10 C -0.144 4.144 11 N -0.539 5.539 12 Si 0.732 3.268 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.195 1.195 16 C -0.038 4.038 17 H 0.158 0.842 18 C -0.158 4.158 19 C -0.096 4.096 20 N -0.287 5.287 21 C -0.125 4.125 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.143 0.857 39 H 0.053 0.947 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.293 -15.586 1.097 16.497 hybrid contribution 0.519 -0.772 -0.717 1.175 sum -4.775 -16.358 0.380 17.045 Atomic orbital electron populations 1.21792 0.95217 1.00829 1.02565 1.22149 0.95725 0.90481 1.00287 1.62291 1.17944 1.15470 1.28933 1.22199 1.00460 0.94578 0.89898 1.22256 0.87348 0.93020 0.98479 1.87758 1.25141 1.27590 1.90670 1.20177 0.97201 0.75414 0.95073 1.21062 0.93910 0.92678 1.47327 0.91531 1.24931 0.98300 0.95773 0.95446 1.69968 1.34450 0.99508 1.49957 0.86375 0.84151 0.77823 0.78407 1.20556 1.21162 1.19525 1.22979 0.85316 1.03043 0.92426 0.84234 1.22402 0.98840 0.97004 0.97520 1.22959 0.96014 0.96806 0.93786 1.63654 1.30901 1.30311 1.03855 1.23635 0.93861 0.97812 0.97188 0.92740 0.92913 0.91870 0.91041 0.95259 0.94027 0.90419 0.94323 0.93587 0.97940 0.97701 0.92748 0.90458 0.90874 0.90466 0.95022 0.85660 0.94705 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.98 37.16 0.37 -1.14 16 2 C 0.04 0.50 4.53 -3.82 -0.02 0.48 16 3 N -0.52 -7.82 4.35 -224.99 -0.98 -8.79 16 4 C 0.06 0.86 5.27 -3.83 -0.02 0.84 16 5 C 0.07 1.25 6.24 37.16 0.23 1.48 16 6 O -0.39 -9.17 7.39 -35.23 -0.26 -9.43 16 7 C 0.20 5.35 5.69 36.00 0.20 5.55 16 8 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 9 H 0.07 1.96 7.81 -52.49 -0.41 1.54 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 12 Si 0.91 22.15 29.54 -169.99 -5.02 17.12 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.07 1.17 2.95 -66.33 -0.20 0.97 16 17 H 0.14 2.95 5.15 -51.93 -0.27 2.68 16 18 C -0.12 -1.74 5.98 -25.35 -0.15 -1.89 16 19 C 0.03 0.43 7.32 -2.18 -0.02 0.41 16 20 N -0.66 -9.26 7.62 -109.66 -0.84 -10.09 16 21 C 0.01 0.09 5.86 -2.19 -0.01 0.08 16 22 H 0.05 0.56 6.54 -51.93 -0.34 0.22 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.84 5.84 -51.93 -0.30 0.53 16 26 H 0.03 0.35 6.50 -51.93 -0.34 0.01 16 27 H 0.04 0.65 7.17 -51.93 -0.37 0.28 16 28 H 0.08 0.99 6.27 -51.93 -0.33 0.66 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.35 7.88 -51.93 -0.41 -0.06 16 38 H 0.33 3.82 8.92 -39.29 -0.35 3.47 16 39 H 0.03 0.47 5.65 -51.93 -0.29 0.18 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -30.58 308.30 -8.44 -39.02 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.70 Total: 0.98 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.03 Total: -7.06 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.08 Total: -45.29 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.26 Total: -9.43 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.58 -8.44 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.114 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds