Wall clock time and date at job start Mon Mar 30 2020 03:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.47018 * 2 1 4 4 C 1.46900 * 111.00035 * 287.77955 * 3 2 1 5 5 C 1.52998 * 109.47008 * 161.39298 * 4 3 2 6 6 O 1.42903 * 109.46939 * 67.54252 * 5 4 3 7 7 C 1.42901 * 114.00094 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47010 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00276 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99750 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99946 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99902 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47633 * 89.99751 * 12 10 8 14 14 H 1.48506 * 109.47046 * 209.99835 * 12 10 8 15 15 H 1.48502 * 109.47409 * 329.99598 * 12 10 8 16 16 C 1.46903 * 110.99683 * 163.82692 * 3 2 1 17 17 H 1.08998 * 110.28667 * 175.61063 * 16 3 2 18 18 C 1.54254 * 110.32321 * 297.73431 * 16 3 2 19 19 C 1.54385 * 105.05893 * 118.89772 * 18 16 3 20 20 N 1.48562 * 104.59333 * 23.85137 * 19 18 16 21 21 C 1.48552 * 104.22273 * 320.51870 * 20 19 18 22 22 H 1.09001 * 109.46869 * 59.75218 * 1 2 3 23 23 H 1.09000 * 109.47200 * 179.75638 * 1 2 3 24 24 H 1.09001 * 109.46986 * 299.75856 * 1 2 3 25 25 H 1.09004 * 109.47044 * 119.99937 * 2 1 3 26 26 H 1.09000 * 109.46941 * 239.99708 * 2 1 3 27 27 H 1.09000 * 109.46891 * 281.39684 * 4 3 2 28 28 H 1.09002 * 109.46734 * 41.39697 * 4 3 2 29 29 H 1.08996 * 109.46911 * 187.53593 * 5 4 3 30 30 H 1.08992 * 109.47576 * 307.54293 * 5 4 3 31 31 H 1.08999 * 109.46848 * 299.99689 * 7 6 5 32 32 H 1.08995 * 109.47408 * 59.99706 * 7 6 5 33 33 H 0.97008 * 120.00035 * 180.02562 * 11 10 8 34 34 H 1.08998 * 110.32951 * 237.79320 * 18 16 3 35 35 H 1.09001 * 110.33210 * 359.90343 * 18 16 3 36 36 H 1.08999 * 110.41105 * 142.63099 * 19 18 16 37 37 H 1.09000 * 110.41631 * 264.95457 * 19 18 16 38 38 H 1.00896 * 110.99867 * 200.95337 * 20 19 18 39 39 H 1.09000 * 110.41158 * 280.70393 * 21 20 19 40 40 H 1.09002 * 110.41712 * 158.25873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8004 2.0210 -1.3059 5 6 1.8774 3.5412 -1.1522 6 8 3.2162 3.9197 -0.8255 7 6 3.3983 5.3273 -0.6596 8 6 4.8388 5.6108 -0.3198 9 1 5.5446 4.7975 -0.2383 10 6 5.2555 6.9086 -0.1120 11 7 4.3959 7.8990 -0.2108 12 14 7.0409 7.2601 0.3099 13 1 7.8119 7.4757 -0.9408 14 1 7.1191 8.4781 1.1558 15 1 7.6111 6.1059 1.0501 16 6 3.4370 1.4423 0.3820 17 1 3.8087 2.4639 0.3034 18 6 3.6266 0.9122 1.8182 19 6 4.5592 -0.3097 1.6749 20 7 5.2945 -0.0727 0.4060 21 6 4.2710 0.4960 -0.5082 22 1 -0.3633 0.5177 -0.8878 23 1 -0.3633 -1.0276 -0.0044 24 1 -0.3633 0.5101 0.8922 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.5664 1.6871 -2.0058 28 1 0.8165 1.7435 -1.6844 29 1 1.5838 4.0164 -2.0882 30 1 1.2051 3.8605 -0.3560 31 1 3.1362 5.8391 -1.5856 32 1 2.7574 5.6840 0.1466 33 1 4.6891 8.8121 -0.0650 34 1 4.0930 1.6730 2.4441 35 1 2.6679 0.6112 2.2404 36 1 5.2539 -0.3582 2.5135 37 1 3.9756 -1.2282 1.6123 38 1 5.6687 -0.9347 0.0385 39 1 3.6421 -0.2961 -0.9146 40 1 4.7485 1.0543 -1.3134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385226469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:05 Heat of formation + Delta-G solvation = -60.989967 kcal Electronic energy + Delta-G solvation = -18557.918012 eV Core-core repulsion = 15792.740551 eV Total energy + Delta-G solvation = -2765.177460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69896 -38.48686 -36.71431 -34.89210 -32.15259 -31.30645 -30.04970 -29.02939 -27.28115 -24.51690 -23.83713 -23.31198 -22.00546 -20.14450 -18.59063 -17.95079 -17.49851 -17.15002 -16.49936 -16.30356 -15.90327 -15.54908 -15.06766 -14.88296 -14.27330 -13.91337 -13.56129 -13.39741 -13.21218 -13.07689 -12.92865 -12.79249 -12.75888 -12.46608 -12.35930 -12.26902 -12.02173 -11.95157 -11.53948 -11.40156 -11.11660 -10.79941 -10.11839 -9.53092 -9.17860 -8.30852 -6.42239 1.39340 1.41878 1.54340 2.35261 2.86600 3.03093 3.22269 3.48302 3.77490 3.87921 4.01378 4.13649 4.24880 4.33291 4.36677 4.49721 4.54273 4.58127 4.65012 4.70913 4.80170 4.81482 4.90360 4.93319 5.00934 5.05983 5.13181 5.21445 5.24412 5.39114 5.47232 5.56602 5.74031 5.98868 6.20804 6.30572 6.43787 6.56511 6.85737 7.29586 8.81527 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.006508 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.960067 B = 4301.566664 C = 5118.344805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.533 5.533 4 C 0.066 3.934 5 C 0.058 3.942 6 O -0.396 6.396 7 C 0.211 3.789 8 C -0.541 4.541 9 H 0.059 0.941 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.979 3.021 13 H -0.268 1.268 14 H -0.274 1.274 15 H -0.267 1.267 16 C 0.068 3.932 17 H 0.088 0.912 18 C -0.118 4.118 19 C 0.042 3.958 20 N -0.677 5.677 21 C 0.017 3.983 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.040 0.960 31 H -0.017 1.017 32 H -0.019 1.019 33 H 0.270 0.730 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.345 0.655 39 H 0.056 0.944 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -18.522 0.721 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.062 4.062 5 C -0.020 4.020 6 O -0.316 6.316 7 C 0.136 3.864 8 C -0.579 4.579 9 H 0.077 0.923 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.802 3.198 13 H -0.193 1.193 14 H -0.199 1.199 15 H -0.191 1.191 16 C -0.041 4.041 17 H 0.106 0.894 18 C -0.156 4.156 19 C -0.087 4.087 20 N -0.307 5.307 21 C -0.114 4.114 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.001 0.999 32 H -0.001 1.001 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.161 0.839 39 H 0.074 0.926 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.139 -17.576 1.296 18.357 hybrid contribution 0.377 -0.191 -0.787 0.894 sum -4.761 -17.766 0.509 18.400 Atomic orbital electron populations 1.21771 0.93725 1.02255 1.02217 1.22235 0.96834 0.88399 1.00967 1.62249 1.17007 1.17781 1.28632 1.22143 1.02095 0.91702 0.90252 1.22581 0.84954 0.95958 0.98478 1.87806 1.28105 1.24885 1.90802 1.19754 0.96094 0.77497 0.93039 1.21340 0.94753 0.93155 1.48618 0.92318 1.25907 1.03344 0.95218 0.94621 1.70072 1.36794 1.00115 1.50069 0.85247 0.77976 0.77942 0.78660 1.19276 1.19864 1.19100 1.22716 0.86495 1.00645 0.94238 0.89417 1.22362 0.99893 0.97413 0.95921 1.22941 0.95890 0.96626 0.93282 1.63580 1.31145 1.31645 1.04326 1.23420 0.93881 0.97792 0.96345 0.92632 0.90616 0.92670 0.90344 0.94434 0.94399 0.87174 0.93555 0.94167 0.99904 1.00099 0.92124 0.92673 0.89579 0.89629 0.92367 0.83920 0.92580 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.98 71.98 0.72 -1.78 16 2 C 0.04 0.91 4.53 86.30 0.39 1.30 16 3 N -0.53 -15.42 4.35 -865.74 -3.76 -19.19 16 4 C 0.07 1.95 5.27 86.30 0.45 2.40 16 5 C 0.06 2.20 6.24 71.98 0.45 2.65 16 6 O -0.40 -19.47 7.39 -148.98 -1.10 -20.57 16 7 C 0.21 12.15 5.69 71.24 0.41 12.56 16 8 C -0.54 -32.96 9.43 25.60 0.24 -32.72 16 9 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 10 C 0.01 0.44 5.46 84.66 0.46 0.90 16 11 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 12 Si 0.98 45.68 29.54 68.60 2.03 47.71 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 C 0.07 2.26 2.95 45.81 0.14 2.39 16 17 H 0.09 3.90 5.15 -2.39 -0.01 3.88 16 18 C -0.12 -3.35 5.98 31.49 0.19 -3.16 16 19 C 0.04 0.96 7.32 86.45 0.63 1.59 16 20 N -0.68 -18.08 7.62 -500.85 -3.82 -21.90 16 21 C 0.02 0.49 5.86 86.45 0.51 1.00 16 22 H 0.05 0.96 6.54 -2.39 -0.02 0.95 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.57 5.84 -2.39 -0.01 1.56 16 26 H 0.04 0.75 6.50 -2.39 -0.02 0.74 16 27 H 0.04 1.16 7.17 -2.39 -0.02 1.14 16 28 H 0.11 2.55 6.27 -2.39 -0.01 2.53 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 33 H 0.27 15.35 8.31 -92.70 -0.77 14.57 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 2.19 6.76 -2.39 -0.02 2.17 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.06 7.88 -2.39 -0.02 1.04 16 38 H 0.34 7.27 8.92 -89.70 -0.80 6.47 16 39 H 0.06 1.38 5.65 -2.39 -0.01 1.37 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -67.73 308.30 -1.57 -69.30 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.21 Total: 14.36 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.58 Total: -12.88 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -7.30 Total: -97.93 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -1.10 Total: -20.57 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.73 -1.57 -69.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.315 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds