Wall clock time and date at job start Mon Mar 30 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 110.99729 * 2 1 4 4 C 1.53126 * 109.52086 * 154.99697 * 3 2 1 5 5 C 1.53036 * 109.27785 * 177.62453 * 4 3 2 6 6 N 1.46849 * 109.52113 * 300.82264 * 5 4 3 7 7 C 1.46905 * 110.99664 * 185.83957 * 6 5 4 8 8 C 1.53000 * 109.47172 * 75.80542 * 7 6 5 9 9 O 1.42903 * 109.47362 * 65.01886 * 8 7 6 10 10 C 1.42898 * 114.00047 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47138 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99783 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00002 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00098 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46928 * 89.99541 * 15 13 11 17 17 H 1.48501 * 109.47021 * 209.99850 * 15 13 11 18 18 H 1.48503 * 109.46644 * 329.99692 * 15 13 11 19 19 C 1.46844 * 111.20087 * 61.74387 * 6 5 4 20 20 C 1.53037 * 109.52235 * 298.25802 * 19 6 5 21 21 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47603 * 300.00227 * 1 2 3 23 23 H 1.09008 * 109.47102 * 60.00328 * 1 2 3 24 24 H 1.00901 * 110.99667 * 123.95350 * 2 1 3 25 25 H 1.08999 * 109.52355 * 34.87389 * 3 2 1 26 26 H 1.08995 * 109.50214 * 57.68172 * 4 3 2 27 27 H 1.09002 * 109.50549 * 297.56468 * 4 3 2 28 28 H 1.08995 * 109.46292 * 180.80629 * 5 4 3 29 29 H 1.08996 * 109.45440 * 60.83427 * 5 4 3 30 30 H 1.08995 * 109.47048 * 315.80365 * 7 6 5 31 31 H 1.09004 * 109.46925 * 195.80246 * 7 6 5 32 32 H 1.09001 * 109.47402 * 185.02248 * 8 7 6 33 33 H 1.09004 * 109.46869 * 305.02019 * 8 7 6 34 34 H 1.08994 * 109.47210 * 300.00048 * 10 9 8 35 35 H 1.09000 * 109.47219 * 59.99941 * 10 9 8 36 36 H 0.96999 * 120.00131 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46077 * 58.27441 * 19 6 5 38 38 H 1.08998 * 109.46144 * 178.24191 * 19 6 5 39 39 H 1.09006 * 109.50047 * 299.23638 * 20 19 6 40 40 H 1.08993 * 109.50440 * 179.12232 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.3998 1.3805 0.6100 5 6 3.9662 2.8010 0.5532 6 7 4.0165 3.2538 -0.8429 7 6 4.6827 4.5587 -0.9494 8 6 6.1940 4.3735 -0.7999 9 8 6.6907 3.6052 -1.8977 10 6 8.1000 3.3728 -1.8541 11 6 8.5120 2.5573 -3.0526 12 1 7.7716 2.2478 -3.7755 13 6 9.8340 2.2071 -3.2267 14 7 10.1936 1.4958 -4.2729 15 14 11.1147 2.7429 -1.9766 16 1 11.2377 1.7075 -0.9192 17 1 12.4248 2.9171 -2.6538 18 1 10.6993 4.0300 -1.3633 19 6 2.6736 3.2986 -1.4353 20 6 2.0685 1.8929 -1.4377 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8305 -0.5261 0.7814 25 1 1.3390 2.0135 0.5874 26 1 4.0460 0.7082 0.0456 27 1 3.3481 1.0506 1.6476 28 1 4.9718 2.8081 0.9737 29 1 3.3270 3.4700 1.1292 30 1 4.3178 5.2182 -0.1620 31 1 4.4651 4.9994 -1.9223 32 1 6.6804 5.3489 -0.7895 33 1 6.4056 3.8521 0.1336 34 1 8.6262 4.3272 -1.8654 35 1 8.3507 2.8304 -0.9425 36 1 11.1237 1.2492 -4.3952 37 1 2.0405 3.9655 -0.8499 38 1 2.7403 3.6671 -2.4589 39 1 2.6938 1.2287 -2.0344 40 1 1.0657 1.9292 -1.8632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385255033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:05 Heat of formation + Delta-G solvation = -43.606988 kcal Electronic energy + Delta-G solvation = -17900.309959 eV Core-core repulsion = 15135.886282 eV Total energy + Delta-G solvation = -2764.423678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28822 -36.98577 -35.70184 -32.67624 -31.89905 -30.88956 -28.84135 -27.20700 -25.39642 -23.10593 -22.72998 -21.75413 -20.93332 -19.71895 -16.79476 -16.37543 -15.84334 -15.62817 -14.89457 -14.85206 -14.53943 -14.37628 -14.13618 -13.71675 -13.21984 -12.91888 -12.67568 -12.46809 -12.29269 -12.07515 -11.78114 -11.45337 -11.16246 -11.07506 -10.87601 -10.70925 -10.56629 -10.45500 -10.16348 -9.78930 -9.08267 -8.74478 -8.60222 -8.36099 -8.05065 -6.04194 -4.02166 3.29182 3.35688 3.37446 3.95868 4.05422 4.41598 4.66071 4.76243 4.83996 5.10289 5.17780 5.23486 5.27122 5.28313 5.35741 5.38791 5.53404 5.56523 5.65960 5.67587 5.74573 5.79890 5.88299 5.93246 6.01080 6.10940 6.23028 6.25435 6.43449 6.68833 6.91217 7.08630 7.20698 7.27771 7.30205 7.68612 8.14734 8.77683 9.09645 9.55834 11.09112 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.004704 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.504832 B = 5950.694031 C = 6275.074431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.690 5.690 3 C 0.088 3.912 4 C -0.119 4.119 5 C 0.060 3.940 6 N -0.523 5.523 7 C 0.061 3.939 8 C 0.065 3.935 9 O -0.364 6.364 10 C 0.168 3.832 11 C -0.513 4.513 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.060 3.940 20 C -0.104 4.104 21 H 0.065 0.935 22 H 0.017 0.983 23 H 0.064 0.936 24 H 0.341 0.659 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.036 0.964 34 H -0.001 1.001 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.522 2.803 12.163 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.320 5.320 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.069 4.069 6 N -0.247 5.247 7 C -0.067 4.067 8 C -0.013 4.013 9 O -0.283 6.283 10 C 0.093 3.907 11 C -0.551 4.551 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.069 4.069 20 C -0.142 4.142 21 H 0.084 0.916 22 H 0.036 0.964 23 H 0.083 0.917 24 H 0.159 0.841 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.163 2.231 10.967 20.490 hybrid contribution 0.291 1.181 2.249 2.557 sum -16.872 3.411 13.216 21.702 Atomic orbital electron populations 1.22223 0.88115 1.01628 1.00155 1.60387 1.07411 1.14241 1.50010 1.21614 0.95081 0.88615 0.96873 1.21771 0.96007 0.97841 1.00114 1.22050 1.00686 0.95114 0.89012 1.61755 1.18249 1.27830 1.16905 1.22113 0.93899 0.89216 1.01424 1.22305 0.92929 0.94745 0.91366 1.88007 1.24635 1.72410 1.43202 1.20569 0.78073 0.94839 0.97258 1.20912 0.94476 1.32406 1.07349 0.89903 1.24765 0.97934 0.94801 0.95513 1.69882 1.17598 1.37957 1.28184 0.86863 0.81383 0.79659 0.81896 1.19994 1.20875 1.19190 1.22084 0.88536 0.96471 0.99801 1.21569 1.00382 0.96084 0.96186 0.91570 0.96405 0.91719 0.84103 0.94601 0.89464 0.92058 0.90322 0.95698 0.94172 0.90065 0.94328 0.94604 0.98339 0.98658 0.92474 0.95871 0.90314 0.89757 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.50 60.06 0.63 0.88 16 2 N -0.69 -7.27 6.67 -113.88 -0.76 -8.03 16 3 C 0.09 0.99 2.56 -67.59 -0.17 0.81 16 4 C -0.12 -1.42 5.36 -26.65 -0.14 -1.57 16 5 C 0.06 0.78 5.29 -3.83 -0.02 0.76 16 6 N -0.52 -7.89 4.53 -234.67 -1.06 -8.95 16 7 C 0.06 0.91 5.39 -3.82 -0.02 0.89 16 8 C 0.06 1.17 6.13 37.16 0.23 1.39 16 9 O -0.36 -8.78 10.27 -35.23 -0.36 -9.14 16 10 C 0.17 4.41 4.76 36.01 0.17 4.58 16 11 C -0.51 -15.71 9.99 -34.44 -0.34 -16.05 16 12 H 0.08 2.78 8.06 -52.48 -0.42 2.36 16 13 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 15 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C 0.06 0.77 5.43 -3.84 -0.02 0.74 16 20 C -0.10 -1.29 5.59 -26.65 -0.15 -1.44 16 21 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.02 0.14 8.06 -51.93 -0.42 -0.28 16 23 H 0.06 0.57 7.51 -51.92 -0.39 0.18 16 24 H 0.34 3.16 8.45 -39.29 -0.33 2.83 16 25 H 0.04 0.39 7.80 -51.93 -0.41 -0.01 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.07 6.65 -51.93 -0.35 0.72 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 31 H 0.08 1.21 7.79 -51.93 -0.40 0.80 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.62 6.70 -51.93 -0.35 0.27 16 34 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 35 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 36 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 1.03 7.93 -51.93 -0.41 0.61 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -32.82 314.67 -8.45 -41.28 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.18 Total: -2.62 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.06 Total: -6.96 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -1.05 Total: -44.47 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.36 Total: -9.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.82 -8.45 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.329 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds