Wall clock time and date at job start Mon Mar 30 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 110.99729 * 2 1 4 4 C 1.53126 * 109.52086 * 154.99697 * 3 2 1 5 5 C 1.53036 * 109.27785 * 177.62453 * 4 3 2 6 6 N 1.46849 * 109.52113 * 300.82264 * 5 4 3 7 7 C 1.46905 * 110.99664 * 185.83957 * 6 5 4 8 8 C 1.53000 * 109.47172 * 75.80542 * 7 6 5 9 9 O 1.42903 * 109.47362 * 65.01886 * 8 7 6 10 10 C 1.42898 * 114.00047 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47138 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99783 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00002 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00098 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46928 * 89.99541 * 15 13 11 17 17 H 1.48501 * 109.47021 * 209.99850 * 15 13 11 18 18 H 1.48503 * 109.46644 * 329.99692 * 15 13 11 19 19 C 1.46844 * 111.20087 * 61.74387 * 6 5 4 20 20 C 1.53037 * 109.52235 * 298.25802 * 19 6 5 21 21 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47603 * 300.00227 * 1 2 3 23 23 H 1.09008 * 109.47102 * 60.00328 * 1 2 3 24 24 H 1.00901 * 110.99667 * 123.95350 * 2 1 3 25 25 H 1.08999 * 109.52355 * 34.87389 * 3 2 1 26 26 H 1.08995 * 109.50214 * 57.68172 * 4 3 2 27 27 H 1.09002 * 109.50549 * 297.56468 * 4 3 2 28 28 H 1.08995 * 109.46292 * 180.80629 * 5 4 3 29 29 H 1.08996 * 109.45440 * 60.83427 * 5 4 3 30 30 H 1.08995 * 109.47048 * 315.80365 * 7 6 5 31 31 H 1.09004 * 109.46925 * 195.80246 * 7 6 5 32 32 H 1.09001 * 109.47402 * 185.02248 * 8 7 6 33 33 H 1.09004 * 109.46869 * 305.02019 * 8 7 6 34 34 H 1.08994 * 109.47210 * 300.00048 * 10 9 8 35 35 H 1.09000 * 109.47219 * 59.99941 * 10 9 8 36 36 H 0.96999 * 120.00131 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46077 * 58.27441 * 19 6 5 38 38 H 1.08998 * 109.46144 * 178.24191 * 19 6 5 39 39 H 1.09006 * 109.50047 * 299.23638 * 20 19 6 40 40 H 1.08993 * 109.50440 * 179.12232 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.3998 1.3805 0.6100 5 6 3.9662 2.8010 0.5532 6 7 4.0165 3.2538 -0.8429 7 6 4.6827 4.5587 -0.9494 8 6 6.1940 4.3735 -0.7999 9 8 6.6907 3.6052 -1.8977 10 6 8.1000 3.3728 -1.8541 11 6 8.5120 2.5573 -3.0526 12 1 7.7716 2.2478 -3.7755 13 6 9.8340 2.2071 -3.2267 14 7 10.1936 1.4958 -4.2729 15 14 11.1147 2.7429 -1.9766 16 1 11.2377 1.7075 -0.9192 17 1 12.4248 2.9171 -2.6538 18 1 10.6993 4.0300 -1.3633 19 6 2.6736 3.2986 -1.4353 20 6 2.0685 1.8929 -1.4377 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8305 -0.5261 0.7814 25 1 1.3390 2.0135 0.5874 26 1 4.0460 0.7082 0.0456 27 1 3.3481 1.0506 1.6476 28 1 4.9718 2.8081 0.9737 29 1 3.3270 3.4700 1.1292 30 1 4.3178 5.2182 -0.1620 31 1 4.4651 4.9994 -1.9223 32 1 6.6804 5.3489 -0.7895 33 1 6.4056 3.8521 0.1336 34 1 8.6262 4.3272 -1.8654 35 1 8.3507 2.8304 -0.9425 36 1 11.1237 1.2492 -4.3952 37 1 2.0405 3.9655 -0.8499 38 1 2.7403 3.6671 -2.4589 39 1 2.6938 1.2287 -2.0344 40 1 1.0657 1.9292 -1.8632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385255033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:05 Heat of formation + Delta-G solvation = -69.431286 kcal Electronic energy + Delta-G solvation = -17901.429785 eV Core-core repulsion = 15135.886282 eV Total energy + Delta-G solvation = -2765.543503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31311 -38.56091 -36.81992 -34.85389 -33.05950 -31.88342 -30.51843 -28.85967 -26.30166 -24.11422 -23.94492 -23.73095 -22.10666 -20.69516 -19.02215 -17.53305 -17.32950 -16.84373 -16.41188 -15.96907 -15.76043 -15.72688 -15.42532 -14.80273 -14.65100 -14.32563 -14.02124 -13.81255 -13.42161 -13.26647 -13.01692 -12.86449 -12.63727 -12.44446 -12.19926 -12.09900 -11.88723 -11.79497 -11.45378 -11.35571 -11.15011 -10.90043 -10.25718 -9.38322 -9.10006 -8.35266 -6.42837 1.33297 1.37151 1.48003 2.30922 2.93034 2.97154 3.18072 3.23339 3.78130 3.88217 4.12859 4.21122 4.31066 4.31589 4.42875 4.51316 4.51692 4.55307 4.58470 4.63724 4.65602 4.69293 4.79551 4.86613 4.93939 4.98299 5.04577 5.05983 5.12768 5.23512 5.41659 5.47056 5.97157 6.11137 6.22327 6.28020 6.48291 6.61674 6.85004 7.22115 8.82356 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.004704 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.504832 B = 5950.694031 C = 6275.074431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.706 5.706 3 C 0.095 3.905 4 C -0.115 4.115 5 C 0.060 3.940 6 N -0.557 5.557 7 C 0.067 3.933 8 C 0.055 3.945 9 O -0.394 6.394 10 C 0.180 3.820 11 C -0.543 4.543 12 H 0.026 0.974 13 C 0.012 3.988 14 N -0.944 5.944 15 Si 0.958 3.042 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.245 1.245 19 C 0.063 3.937 20 C -0.101 4.101 21 H 0.075 0.925 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.348 0.652 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.010 0.990 35 H 0.006 0.994 36 H 0.273 0.727 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.837 4.162 15.011 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.338 5.338 3 C -0.015 4.015 4 C -0.154 4.154 5 C -0.068 4.068 6 N -0.282 5.282 7 C -0.061 4.061 8 C -0.022 4.022 9 O -0.313 6.313 10 C 0.104 3.896 11 C -0.581 4.581 12 H 0.045 0.955 13 C -0.186 4.186 14 N -0.584 5.584 15 Si 0.779 3.221 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.168 1.168 19 C -0.065 4.065 20 C -0.140 4.140 21 H 0.094 0.906 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.167 0.833 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.513 3.593 13.822 22.598 hybrid contribution 0.284 0.704 1.282 1.490 sum -17.229 4.298 15.103 23.312 Atomic orbital electron populations 1.22253 0.86822 1.02445 1.00487 1.60349 1.08761 1.13978 1.50712 1.21501 0.94859 0.89293 0.95820 1.21728 0.95793 0.96811 1.01021 1.22072 1.00741 0.95865 0.88105 1.61688 1.19654 1.28345 1.18562 1.22068 0.91799 0.89845 1.02391 1.22694 0.95031 0.94733 0.89774 1.87963 1.23346 1.73839 1.46201 1.20262 0.79641 0.94429 0.95227 1.21181 0.94248 1.34248 1.08442 0.95538 1.25867 1.00489 0.94225 0.98012 1.70045 1.18761 1.39033 1.30565 0.85580 0.77521 0.80331 0.78703 1.18452 1.19723 1.16830 1.22051 0.88010 0.96945 0.99526 1.21526 1.00220 0.95339 0.96889 0.90609 0.95238 0.92088 0.83340 0.93124 0.92770 0.89711 0.91252 0.93353 0.90566 0.90732 0.92569 0.93687 0.97191 0.97663 0.91834 0.93551 0.91354 0.93327 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.50 127.69 1.34 1.79 16 2 N -0.71 -14.07 6.67 -514.19 -3.43 -17.49 16 3 C 0.09 1.99 2.56 45.00 0.12 2.11 16 4 C -0.12 -2.63 5.36 30.65 0.16 -2.47 16 5 C 0.06 1.45 5.29 86.33 0.46 1.91 16 6 N -0.56 -16.33 4.53 -896.37 -4.06 -20.39 16 7 C 0.07 1.86 5.39 86.30 0.47 2.32 16 8 C 0.05 1.89 6.13 71.98 0.44 2.33 16 9 O -0.39 -19.20 10.27 -148.98 -1.53 -20.73 16 10 C 0.18 9.42 4.76 71.24 0.34 9.76 16 11 C -0.54 -34.44 9.99 25.60 0.26 -34.18 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 13 C 0.01 0.71 5.47 84.65 0.46 1.17 16 14 N -0.94 -61.06 13.96 21.45 0.30 -60.76 16 15 Si 0.96 44.42 27.47 68.60 1.88 46.31 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 19 C 0.06 1.55 5.43 86.33 0.47 2.02 16 20 C -0.10 -2.49 5.59 30.64 0.17 -2.32 16 21 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.03 0.39 8.06 -2.39 -0.02 0.37 16 23 H 0.06 0.97 7.51 -2.38 -0.02 0.95 16 24 H 0.35 6.01 8.45 -89.69 -0.76 5.25 16 25 H 0.05 0.94 7.80 -2.39 -0.02 0.92 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.77 6.65 -2.39 -0.02 1.76 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.59 8.00 -2.39 -0.02 1.58 16 31 H 0.07 2.16 7.79 -2.38 -0.02 2.14 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.47 6.70 -2.39 -0.02 1.45 16 34 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 35 H 0.01 0.28 7.57 -2.39 -0.02 0.26 16 36 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.79 7.93 -2.39 -0.02 1.77 16 39 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 1.57 7.54 -2.39 -0.02 1.55 16 Total: -1.00 -73.70 314.67 -1.98 -75.68 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.18 Total: 12.95 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.68 Total: -15.55 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -7.19 Total: -98.65 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -1.53 Total: -20.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Total: -73.70 -1.98 -75.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.245 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds