Wall clock time and date at job start Mon Mar 30 2020 04:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99641 * 2 1 4 4 C 1.53007 * 109.47337 * 66.04830 * 3 2 1 5 5 O 1.42898 * 109.46943 * 64.99595 * 4 3 2 6 6 C 1.42899 * 114.00095 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47381 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99752 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00393 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99906 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47386 * 59.99720 * 11 9 7 13 13 H 1.48501 * 109.47222 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47048 * 299.99446 * 11 9 7 15 15 C 1.46896 * 110.99587 * 236.04867 * 2 1 3 16 16 H 1.08996 * 109.53820 * 63.85924 * 15 2 1 17 17 C 1.53119 * 109.50551 * 303.75057 * 15 2 1 18 18 C 1.53120 * 109.16202 * 182.40700 * 17 15 2 19 19 C 1.53041 * 109.27703 * 57.65829 * 18 17 15 20 20 N 1.46847 * 109.51486 * 300.81824 * 19 18 17 21 21 C 1.46847 * 111.20163 * 61.75514 * 20 19 18 22 22 H 1.09001 * 109.47154 * 183.95152 * 1 2 3 23 23 H 1.09003 * 109.47277 * 303.95201 * 1 2 3 24 24 H 1.08999 * 109.47165 * 63.95141 * 1 2 3 25 25 H 1.09003 * 109.47169 * 186.04279 * 3 2 1 26 26 H 1.08998 * 109.47530 * 306.04727 * 3 2 1 27 27 H 1.08996 * 109.47131 * 184.99859 * 4 3 2 28 28 H 1.08999 * 109.46911 * 304.99770 * 4 3 2 29 29 H 1.09007 * 109.47075 * 300.00513 * 6 5 4 30 30 H 1.09005 * 109.47061 * 59.99908 * 6 5 4 31 31 H 0.96995 * 120.00448 * 180.02562 * 10 9 7 32 32 H 1.08993 * 109.52284 * 302.31965 * 17 15 2 33 33 H 1.09003 * 109.51872 * 62.50414 * 17 15 2 34 34 H 1.08996 * 109.50328 * 177.59853 * 18 17 15 35 35 H 1.08996 * 109.50004 * 297.72216 * 18 17 15 36 36 H 1.09005 * 109.45785 * 60.83329 * 19 18 17 37 37 H 1.08995 * 109.46178 * 180.81412 * 19 18 17 38 38 H 1.00902 * 111.00813 * 297.64967 * 20 19 18 39 39 H 1.09002 * 109.46448 * 178.23132 * 21 20 19 40 40 H 1.08994 * 109.45958 * 58.25497 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0575 1.3183 5 8 2.2955 1.3976 2.3979 6 6 2.0213 1.9628 3.6814 7 6 2.7697 1.1934 4.7393 8 1 3.3920 0.3563 4.4595 9 6 2.6589 1.5576 6.0645 10 7 1.9006 2.5767 6.4053 11 14 3.5870 0.6045 7.3757 12 1 5.0449 0.6796 7.1037 13 1 3.3020 1.1918 8.7096 14 1 3.1524 -0.8154 7.3565 15 6 1.9953 -0.7659 -1.1376 16 1 1.7034 -0.2816 -2.0694 17 6 1.4299 -2.1884 -1.1017 18 6 2.0298 -2.9970 -2.2553 19 6 3.5554 -2.9932 -2.1352 20 7 4.0472 -1.6101 -2.1755 21 6 3.5220 -0.8268 -1.0499 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5610 1.9274 -0.8309 27 1 1.9437 3.1011 1.2831 28 1 0.5531 2.0058 1.4692 29 1 2.3414 3.0047 3.6955 30 1 0.9511 1.9088 3.8811 31 1 1.8230 2.8332 7.3375 32 1 1.6886 -2.6594 -0.1534 33 1 0.3456 -2.1521 -1.2075 34 1 1.6637 -4.0227 -2.2097 35 1 1.7383 -2.5478 -3.2046 36 1 3.8466 -3.4550 -1.1917 37 1 3.9863 -3.5560 -2.9633 38 1 3.8234 -1.1721 -3.0565 39 1 3.9287 0.1838 -1.0896 40 1 3.8134 -1.2988 -0.1117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385259411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:10 Heat of formation + Delta-G solvation = -45.466627 kcal Electronic energy + Delta-G solvation = -18062.795422 eV Core-core repulsion = 15298.291105 eV Total energy + Delta-G solvation = -2764.504318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51608 -37.08872 -35.60265 -32.67004 -31.82410 -30.29725 -28.78222 -26.90617 -25.47309 -23.26609 -22.51319 -22.16790 -20.67704 -20.00594 -16.63710 -16.31405 -15.75443 -15.51509 -15.18242 -14.74617 -14.63713 -14.30672 -13.93646 -13.49983 -13.18783 -12.78969 -12.70590 -12.37497 -12.02418 -11.78587 -11.68450 -11.42443 -11.16389 -11.00929 -10.90825 -10.79257 -10.73630 -10.33754 -10.29483 -9.92604 -9.03488 -8.73003 -8.46524 -8.10642 -8.03695 -6.04778 -4.05618 3.36860 3.38897 3.43449 3.87896 4.31294 4.40657 4.67437 4.76236 4.87210 4.95738 5.02864 5.21819 5.31662 5.33747 5.40403 5.47040 5.50562 5.64741 5.70001 5.76240 5.80335 5.88048 5.94174 6.00648 6.08890 6.14850 6.19666 6.26044 6.34988 6.85373 7.16333 7.24201 7.28600 7.31641 7.50257 7.86926 8.23574 8.68868 9.09046 9.59068 11.06937 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.004891 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.950907 B = 5723.703545 C = 6190.850031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.056 3.944 4 C 0.067 3.933 5 O -0.379 6.379 6 C 0.194 3.806 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.053 3.947 16 H 0.031 0.969 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.054 3.946 20 N -0.683 5.683 21 C 0.061 3.939 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.016 0.984 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.335 0.665 39 H 0.077 0.923 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -7.171 -18.238 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.072 4.072 4 C -0.012 4.012 5 O -0.298 6.298 6 C 0.120 3.880 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.541 5.541 11 Si 0.734 3.266 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.057 4.057 16 H 0.048 0.952 17 C -0.153 4.153 18 C -0.195 4.195 19 C -0.075 4.075 20 N -0.310 5.310 21 C -0.069 4.069 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.035 0.965 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.626 -7.602 -17.339 18.943 hybrid contribution -1.214 0.461 -0.186 1.312 sum -1.840 -7.142 -17.525 19.014 Atomic orbital electron populations 1.22466 0.87850 1.02189 1.00157 1.61883 1.07352 1.13637 1.41439 1.22242 1.01180 0.87938 0.95791 1.22254 0.96133 0.94551 0.88214 1.87945 1.69554 1.56859 1.15457 1.20166 0.95513 0.93498 0.78826 1.21029 1.28083 1.15273 0.90423 0.91570 1.24938 0.95711 0.95407 0.98468 1.69956 1.39115 1.27079 1.17938 0.86411 0.80184 0.79983 0.79978 1.20027 1.21241 1.20038 1.22368 0.97303 0.94315 0.91717 0.95160 1.21685 0.99797 0.94544 0.99317 1.22277 0.97966 1.00712 0.98520 1.22057 0.92166 0.90573 1.02738 1.60749 1.61475 1.02797 1.05993 1.22180 0.90815 0.98692 0.95211 0.91360 0.90716 0.96534 0.89681 0.94634 0.94382 0.94612 0.98058 0.98009 0.92713 0.90493 0.91967 0.91313 0.92411 0.90554 0.90951 0.84783 0.90426 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.92 60.06 0.54 0.83 16 2 N -0.52 -7.90 4.58 -234.79 -1.08 -8.98 16 3 C 0.06 0.86 5.16 -3.82 -0.02 0.84 16 4 C 0.07 1.27 6.00 37.16 0.22 1.49 16 5 O -0.38 -9.37 10.27 -35.23 -0.36 -9.73 16 6 C 0.19 5.47 5.69 36.01 0.20 5.67 16 7 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 11 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 15 C 0.05 0.67 2.09 -67.63 -0.14 0.52 16 16 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 17 C -0.12 -1.31 4.84 -26.61 -0.13 -1.43 16 18 C -0.15 -1.40 6.08 -26.65 -0.16 -1.56 16 19 C 0.05 0.52 6.55 -3.83 -0.03 0.49 16 20 N -0.68 -7.36 6.87 -113.81 -0.78 -8.15 16 21 C 0.06 0.77 5.61 -3.83 -0.02 0.75 16 22 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 23 H 0.07 1.13 6.21 -51.93 -0.32 0.81 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.08 1.31 5.85 -51.93 -0.30 1.01 16 26 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.67 6.26 -51.93 -0.33 0.34 16 29 H 0.00 0.05 8.14 -51.92 -0.42 -0.38 16 30 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.68 6.50 -51.93 -0.34 0.34 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.34 3.10 8.86 -39.29 -0.35 2.75 16 39 H 0.08 1.00 6.25 -51.93 -0.32 0.68 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -31.66 311.72 -8.67 -40.33 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.91 Total: -2.18 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.04 Total: -6.54 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.12 Total: -43.83 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.66 -8.67 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385259411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.138 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds