Wall clock time and date at job start Mon Mar 30 2020 04:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99641 * 2 1 4 4 C 1.53007 * 109.47337 * 66.04830 * 3 2 1 5 5 O 1.42898 * 109.46943 * 64.99595 * 4 3 2 6 6 C 1.42899 * 114.00095 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47381 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99752 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00393 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99906 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47386 * 59.99720 * 11 9 7 13 13 H 1.48501 * 109.47222 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47048 * 299.99446 * 11 9 7 15 15 C 1.46896 * 110.99587 * 236.04867 * 2 1 3 16 16 H 1.08996 * 109.53820 * 63.85924 * 15 2 1 17 17 C 1.53119 * 109.50551 * 303.75057 * 15 2 1 18 18 C 1.53120 * 109.16202 * 182.40700 * 17 15 2 19 19 C 1.53041 * 109.27703 * 57.65829 * 18 17 15 20 20 N 1.46847 * 109.51486 * 300.81824 * 19 18 17 21 21 C 1.46847 * 111.20163 * 61.75514 * 20 19 18 22 22 H 1.09001 * 109.47154 * 183.95152 * 1 2 3 23 23 H 1.09003 * 109.47277 * 303.95201 * 1 2 3 24 24 H 1.08999 * 109.47165 * 63.95141 * 1 2 3 25 25 H 1.09003 * 109.47169 * 186.04279 * 3 2 1 26 26 H 1.08998 * 109.47530 * 306.04727 * 3 2 1 27 27 H 1.08996 * 109.47131 * 184.99859 * 4 3 2 28 28 H 1.08999 * 109.46911 * 304.99770 * 4 3 2 29 29 H 1.09007 * 109.47075 * 300.00513 * 6 5 4 30 30 H 1.09005 * 109.47061 * 59.99908 * 6 5 4 31 31 H 0.96995 * 120.00448 * 180.02562 * 10 9 7 32 32 H 1.08993 * 109.52284 * 302.31965 * 17 15 2 33 33 H 1.09003 * 109.51872 * 62.50414 * 17 15 2 34 34 H 1.08996 * 109.50328 * 177.59853 * 18 17 15 35 35 H 1.08996 * 109.50004 * 297.72216 * 18 17 15 36 36 H 1.09005 * 109.45785 * 60.83329 * 19 18 17 37 37 H 1.08995 * 109.46178 * 180.81412 * 19 18 17 38 38 H 1.00902 * 111.00813 * 297.64967 * 20 19 18 39 39 H 1.09002 * 109.46448 * 178.23132 * 21 20 19 40 40 H 1.08994 * 109.45958 * 58.25497 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0575 1.3183 5 8 2.2955 1.3976 2.3979 6 6 2.0213 1.9628 3.6814 7 6 2.7697 1.1934 4.7393 8 1 3.3920 0.3563 4.4595 9 6 2.6589 1.5576 6.0645 10 7 1.9006 2.5767 6.4053 11 14 3.5870 0.6045 7.3757 12 1 5.0449 0.6796 7.1037 13 1 3.3020 1.1918 8.7096 14 1 3.1524 -0.8154 7.3565 15 6 1.9953 -0.7659 -1.1376 16 1 1.7034 -0.2816 -2.0694 17 6 1.4299 -2.1884 -1.1017 18 6 2.0298 -2.9970 -2.2553 19 6 3.5554 -2.9932 -2.1352 20 7 4.0472 -1.6101 -2.1755 21 6 3.5220 -0.8268 -1.0499 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5610 1.9274 -0.8309 27 1 1.9437 3.1011 1.2831 28 1 0.5531 2.0058 1.4692 29 1 2.3414 3.0047 3.6955 30 1 0.9511 1.9088 3.8811 31 1 1.8230 2.8332 7.3375 32 1 1.6886 -2.6594 -0.1534 33 1 0.3456 -2.1521 -1.2075 34 1 1.6637 -4.0227 -2.2097 35 1 1.7383 -2.5478 -3.2046 36 1 3.8466 -3.4550 -1.1917 37 1 3.9863 -3.5560 -2.9633 38 1 3.8234 -1.1721 -3.0565 39 1 3.9287 0.1838 -1.0896 40 1 3.8134 -1.2988 -0.1117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385259411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:10 Heat of formation + Delta-G solvation = -69.578835 kcal Electronic energy + Delta-G solvation = -18063.841006 eV Core-core repulsion = 15298.291105 eV Total energy + Delta-G solvation = -2765.549901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52497 -38.66376 -36.97603 -34.88221 -32.77232 -31.46781 -30.11210 -28.87979 -26.69311 -24.49334 -24.20812 -23.49359 -21.79630 -21.02594 -18.60678 -17.72443 -17.40513 -16.80163 -16.39265 -16.22308 -15.84109 -15.66402 -15.39916 -14.83867 -14.59335 -14.06441 -13.73097 -13.60991 -13.35844 -13.27317 -12.99664 -12.83070 -12.72205 -12.60557 -12.36457 -12.16406 -11.94430 -11.74490 -11.61604 -11.33675 -11.24379 -10.83203 -10.16365 -9.32633 -9.17291 -8.30880 -6.42830 1.39791 1.44868 1.53191 2.35802 2.82542 3.02714 3.23461 3.45616 3.76581 3.83121 4.04760 4.14366 4.18895 4.22940 4.33026 4.44869 4.49967 4.53219 4.56752 4.60603 4.68337 4.83275 4.91411 4.98091 4.98514 5.00331 5.08060 5.13394 5.17665 5.20088 5.33512 5.56297 5.93183 5.98521 6.11986 6.26906 6.51243 6.58060 6.87385 7.29428 8.81394 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.004891 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.950907 B = 5723.703545 C = 6190.850031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.065 3.935 4 C 0.057 3.943 5 O -0.394 6.394 6 C 0.210 3.790 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.274 1.274 14 H -0.267 1.267 15 C 0.059 3.941 16 H 0.046 0.954 17 C -0.114 4.114 18 C -0.145 4.145 19 C 0.053 3.947 20 N -0.686 5.686 21 C 0.067 3.933 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.038 0.962 29 H -0.017 1.017 30 H -0.019 1.019 31 H 0.271 0.729 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.348 0.652 39 H 0.074 0.926 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -8.160 -19.421 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.062 4.062 4 C -0.021 4.021 5 O -0.313 6.313 6 C 0.135 3.865 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.191 4.191 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.190 1.190 13 H -0.198 1.198 14 H -0.191 1.191 15 C -0.051 4.051 16 H 0.064 0.936 17 C -0.152 4.152 18 C -0.185 4.185 19 C -0.076 4.076 20 N -0.315 5.315 21 C -0.063 4.063 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.166 0.834 39 H 0.092 0.908 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.395 -8.590 -18.560 20.455 hybrid contribution -1.326 0.794 0.108 1.549 sum -1.721 -7.796 -18.451 20.105 Atomic orbital electron populations 1.22420 0.87122 1.02516 1.00273 1.61824 1.08302 1.13695 1.43527 1.22129 1.01347 0.88497 0.94236 1.22611 0.96009 0.95300 0.88152 1.87903 1.70457 1.57598 1.15359 1.19777 0.93827 0.92420 0.80518 1.21345 1.29195 1.15913 0.91881 0.92265 1.25942 0.96260 0.96216 1.00696 1.70063 1.39870 1.28221 1.18966 0.85257 0.78902 0.78575 0.76815 1.18995 1.19828 1.19147 1.22368 0.96825 0.94639 0.91234 0.93585 1.21673 1.00312 0.93983 0.99246 1.22211 0.97182 1.01140 0.97977 1.22107 0.92805 0.89887 1.02827 1.60698 1.61595 1.03255 1.05921 1.21991 0.91243 0.98380 0.94674 0.90656 0.92803 0.94382 0.89876 0.91501 0.93587 0.94374 0.99881 1.00129 0.92067 0.92878 0.91305 0.90021 0.90947 0.92116 0.88842 0.83376 0.90811 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 8.92 127.69 1.14 1.79 16 2 N -0.55 -16.37 4.58 -896.72 -4.11 -20.48 16 3 C 0.07 1.96 5.16 86.31 0.45 2.41 16 4 C 0.06 2.18 6.00 71.98 0.43 2.61 16 5 O -0.39 -20.09 10.27 -148.98 -1.53 -21.62 16 6 C 0.21 12.25 5.69 71.24 0.41 12.66 16 7 C -0.55 -33.66 9.43 25.60 0.24 -33.42 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.01 0.42 5.46 84.65 0.46 0.88 16 10 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 11 Si 0.98 45.54 29.54 68.60 2.03 47.56 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.06 1.40 2.09 44.97 0.09 1.49 16 16 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 17 C -0.11 -2.43 4.84 30.67 0.15 -2.28 16 18 C -0.15 -2.27 6.08 30.65 0.19 -2.09 16 19 C 0.05 0.92 6.55 86.33 0.57 1.49 16 20 N -0.69 -13.75 6.87 -513.99 -3.53 -17.27 16 21 C 0.07 1.68 5.61 86.33 0.48 2.17 16 22 H 0.07 1.85 6.30 -2.39 -0.02 1.84 16 23 H 0.05 1.63 6.21 -2.39 -0.01 1.62 16 24 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 2.52 5.85 -2.39 -0.01 2.51 16 26 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.45 6.26 -2.39 -0.01 1.43 16 29 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 30 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.36 6.50 -2.39 -0.02 1.35 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.35 5.56 8.86 -89.69 -0.79 4.76 16 39 H 0.07 1.87 6.25 -2.39 -0.01 1.85 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -68.73 311.72 -2.04 -70.77 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.21 Total: 10.30 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.60 Total: -12.30 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -7.35 Total: -94.72 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.53 Total: -21.62 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.73 -2.04 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385259411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.191 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds