Wall clock time and date at job start Mon Mar 30 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00004 * 2 1 4 4 C 1.52998 * 109.47161 * 287.13295 * 3 2 1 5 5 O 1.42902 * 109.47374 * 68.03983 * 4 3 2 6 6 C 1.42897 * 114.00164 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47214 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99663 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00150 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99909 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47279 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.47478 * 119.99473 * 11 9 7 14 14 H 1.48500 * 109.47246 * 239.99515 * 11 9 7 15 15 C 1.46898 * 110.99810 * 123.95579 * 2 1 3 16 16 H 1.09007 * 109.50526 * 296.04313 * 15 2 1 17 17 C 1.53116 * 109.50756 * 56.12371 * 15 2 1 18 18 C 1.53124 * 109.16039 * 177.55572 * 17 15 2 19 19 C 1.53038 * 109.30775 * 302.40276 * 18 17 15 20 20 N 1.46844 * 109.52154 * 59.16170 * 19 18 17 21 21 C 1.46846 * 111.19970 * 298.25234 * 20 19 18 22 22 H 1.09003 * 109.47523 * 304.50782 * 1 2 3 23 23 H 1.08994 * 109.47040 * 64.50853 * 1 2 3 24 24 H 1.09004 * 109.47489 * 184.50962 * 1 2 3 25 25 H 1.09004 * 109.47003 * 47.13352 * 3 2 1 26 26 H 1.08996 * 109.47270 * 167.13051 * 3 2 1 27 27 H 1.09001 * 109.47223 * 188.04053 * 4 3 2 28 28 H 1.08999 * 109.46934 * 308.03642 * 4 3 2 29 29 H 1.08998 * 109.47190 * 300.00360 * 6 5 4 30 30 H 1.09005 * 109.46912 * 60.00339 * 6 5 4 31 31 H 0.97003 * 120.00504 * 180.02562 * 10 9 7 32 32 H 1.08996 * 109.52371 * 297.50367 * 17 15 2 33 33 H 1.09001 * 109.52258 * 57.68571 * 17 15 2 34 34 H 1.09005 * 109.50250 * 182.44868 * 18 17 15 35 35 H 1.08993 * 109.50523 * 62.36770 * 18 17 15 36 36 H 1.08998 * 109.46448 * 299.13888 * 19 18 17 37 37 H 1.09005 * 109.44877 * 179.16769 * 19 18 17 38 38 H 1.00899 * 111.00343 * 62.35367 * 20 19 18 39 39 H 1.08994 * 109.46068 * 301.73359 * 21 20 19 40 40 H 1.08998 * 109.45198 * 181.75286 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7815 1.9998 -1.3785 5 8 0.3837 2.1977 -1.6001 6 6 0.0731 2.7835 -2.8659 7 6 -1.4198 2.9460 -2.9914 8 1 -2.0667 2.6335 -2.1850 9 6 -1.9599 3.4935 -4.1358 10 7 -1.1722 3.8744 -5.1175 11 14 -3.8105 3.6942 -4.2916 12 1 -4.4685 3.1918 -3.0588 13 1 -4.1387 5.1305 -4.4781 14 1 -4.2956 2.9196 -5.4620 15 6 1.9954 -0.7660 1.1376 16 1 1.7046 -0.2803 2.0691 17 6 1.4276 -2.1876 1.1033 18 6 2.0282 -2.9966 2.2563 19 6 3.5538 -2.9945 2.1350 20 7 4.0472 -1.6120 2.1743 21 6 3.5220 -0.8285 1.0488 22 1 -0.3634 0.5822 0.8468 23 1 -0.3633 0.4423 -0.9276 24 1 -0.3634 -1.0245 0.0808 25 1 1.4729 1.9611 0.7532 26 1 3.0609 1.3516 0.2289 27 1 2.2960 2.9596 -1.4240 28 1 2.1808 1.3368 -2.1459 29 1 0.5521 3.7596 -2.9419 30 1 0.4370 2.1369 -3.6645 31 1 -1.5520 4.2599 -5.9225 32 1 0.3435 -2.1495 1.2102 33 1 1.6845 -2.6597 0.1551 34 1 1.6611 -4.0220 2.2114 35 1 1.7380 -2.5474 3.2060 36 1 3.8438 -3.4571 1.1917 37 1 3.9845 -3.5575 2.9631 38 1 3.8246 -1.1734 3.0553 39 1 3.8121 -1.3013 0.1105 40 1 3.9297 0.1815 1.0880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385259413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:13 Heat of formation + Delta-G solvation = -47.276380 kcal Electronic energy + Delta-G solvation = -18022.686489 eV Core-core repulsion = 15258.103695 eV Total energy + Delta-G solvation = -2764.582794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53670 -37.16588 -35.51880 -32.72609 -31.89599 -30.22842 -28.84149 -27.01517 -25.16098 -23.29319 -22.53930 -22.19074 -20.76482 -20.03826 -16.67970 -16.38530 -15.74054 -15.60266 -15.09632 -14.86402 -14.54705 -14.39440 -13.92101 -13.43507 -13.19884 -12.84506 -12.67267 -12.35311 -11.84360 -11.76937 -11.61002 -11.38975 -11.18805 -10.96969 -10.93492 -10.77378 -10.70304 -10.63220 -10.27156 -9.91528 -9.06571 -8.78288 -8.54540 -8.15373 -8.03118 -6.10358 -4.11995 3.28801 3.35369 3.41288 3.91770 4.26009 4.35412 4.63054 4.74585 4.86618 4.93605 5.00992 5.21569 5.26271 5.27854 5.38562 5.45541 5.65106 5.68650 5.72182 5.84261 5.88763 5.95534 5.97086 6.01310 6.10330 6.17612 6.22380 6.40524 6.76602 6.84993 7.14725 7.15809 7.32388 7.40988 7.47122 7.79755 8.17000 8.60013 9.01903 9.52979 11.01223 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047603 B = 0.004252 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.060147 B = 6583.450827 C = 6973.375370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.055 3.945 4 C 0.067 3.933 5 O -0.393 6.393 6 C 0.194 3.806 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.906 3.094 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.048 3.952 16 H 0.032 0.968 17 C -0.115 4.115 18 C -0.156 4.156 19 C 0.055 3.945 20 N -0.684 5.684 21 C 0.061 3.939 22 H 0.017 0.983 23 H 0.107 0.893 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.337 0.663 39 H 0.083 0.917 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -11.227 13.893 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.073 4.073 4 C -0.011 4.011 5 O -0.313 6.313 6 C 0.120 3.880 7 C -0.551 4.551 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.208 1.208 15 C -0.063 4.063 16 H 0.050 0.950 17 C -0.153 4.153 18 C -0.196 4.196 19 C -0.075 4.075 20 N -0.311 5.311 21 C -0.069 4.069 22 H 0.036 0.964 23 H 0.125 0.875 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.101 0.899 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.937 -11.573 13.092 19.626 hybrid contribution -2.050 0.831 0.594 2.291 sum 6.886 -10.742 13.685 18.711 Atomic orbital electron populations 1.22701 0.86077 1.00408 1.03750 1.62055 1.09168 1.13245 1.40793 1.22272 0.99363 0.88323 0.97313 1.22253 0.85876 0.97483 0.95478 1.87827 1.20222 1.83004 1.40244 1.20180 0.96393 0.91815 0.79618 1.21087 0.91134 1.40747 1.02165 0.91633 1.24944 0.98836 0.95361 0.95362 1.69971 1.34996 1.42176 1.06574 0.86313 0.84448 0.77759 0.78147 1.19539 1.20882 1.20845 1.22386 0.96760 0.94496 0.92625 0.94962 1.21691 1.00233 0.94424 0.98968 1.22285 0.97758 1.00781 0.98753 1.22046 0.92326 0.90476 1.02606 1.60763 1.61373 1.02878 1.06134 1.22177 0.91274 0.98415 0.95050 0.96401 0.87501 0.92514 0.94330 0.90141 0.94268 0.93541 0.97909 0.97659 0.92733 0.91567 0.90829 0.91301 0.92284 0.90722 0.90918 0.84554 0.89880 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.82 60.07 0.53 0.83 16 2 N -0.53 -8.04 4.58 -234.79 -1.08 -9.12 16 3 C 0.06 0.85 5.38 -3.83 -0.02 0.83 16 4 C 0.07 1.26 6.22 37.16 0.23 1.49 16 5 O -0.39 -9.30 7.48 -35.23 -0.26 -9.56 16 6 C 0.19 5.32 5.69 36.00 0.20 5.53 16 7 C -0.51 -15.04 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 11 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.05 0.58 2.09 -67.63 -0.14 0.44 16 16 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 17 C -0.12 -1.28 4.87 -26.61 -0.13 -1.41 16 18 C -0.16 -1.36 6.08 -26.65 -0.16 -1.53 16 19 C 0.06 0.47 6.55 -3.83 -0.03 0.45 16 20 N -0.68 -6.60 6.87 -113.82 -0.78 -7.38 16 21 C 0.06 0.67 5.64 -3.83 -0.02 0.65 16 22 H 0.02 0.29 8.02 -51.93 -0.42 -0.12 16 23 H 0.11 2.18 5.72 -51.93 -0.30 1.88 16 24 H 0.06 0.84 5.84 -51.93 -0.30 0.54 16 25 H 0.04 0.62 7.95 -51.93 -0.41 0.21 16 26 H 0.08 1.03 5.62 -51.93 -0.29 0.74 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.34 2.89 8.86 -39.29 -0.35 2.55 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.83 6.13 -51.93 -0.32 0.51 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -30.36 309.43 -8.61 -38.96 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.91 Total: -1.60 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 0.04 Total: -6.56 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -1.12 Total: -42.74 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.26 Total: -9.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.36 -8.61 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385259413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.312 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds