Wall clock time and date at job start Mon Mar 30 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00004 * 2 1 4 4 C 1.52998 * 109.47161 * 287.13295 * 3 2 1 5 5 O 1.42902 * 109.47374 * 68.03983 * 4 3 2 6 6 C 1.42897 * 114.00164 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47214 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99663 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00150 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99909 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47279 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.47478 * 119.99473 * 11 9 7 14 14 H 1.48500 * 109.47246 * 239.99515 * 11 9 7 15 15 C 1.46898 * 110.99810 * 123.95579 * 2 1 3 16 16 H 1.09007 * 109.50526 * 296.04313 * 15 2 1 17 17 C 1.53116 * 109.50756 * 56.12371 * 15 2 1 18 18 C 1.53124 * 109.16039 * 177.55572 * 17 15 2 19 19 C 1.53038 * 109.30775 * 302.40276 * 18 17 15 20 20 N 1.46844 * 109.52154 * 59.16170 * 19 18 17 21 21 C 1.46846 * 111.19970 * 298.25234 * 20 19 18 22 22 H 1.09003 * 109.47523 * 304.50782 * 1 2 3 23 23 H 1.08994 * 109.47040 * 64.50853 * 1 2 3 24 24 H 1.09004 * 109.47489 * 184.50962 * 1 2 3 25 25 H 1.09004 * 109.47003 * 47.13352 * 3 2 1 26 26 H 1.08996 * 109.47270 * 167.13051 * 3 2 1 27 27 H 1.09001 * 109.47223 * 188.04053 * 4 3 2 28 28 H 1.08999 * 109.46934 * 308.03642 * 4 3 2 29 29 H 1.08998 * 109.47190 * 300.00360 * 6 5 4 30 30 H 1.09005 * 109.46912 * 60.00339 * 6 5 4 31 31 H 0.97003 * 120.00504 * 180.02562 * 10 9 7 32 32 H 1.08996 * 109.52371 * 297.50367 * 17 15 2 33 33 H 1.09001 * 109.52258 * 57.68571 * 17 15 2 34 34 H 1.09005 * 109.50250 * 182.44868 * 18 17 15 35 35 H 1.08993 * 109.50523 * 62.36770 * 18 17 15 36 36 H 1.08998 * 109.46448 * 299.13888 * 19 18 17 37 37 H 1.09005 * 109.44877 * 179.16769 * 19 18 17 38 38 H 1.00899 * 111.00343 * 62.35367 * 20 19 18 39 39 H 1.08994 * 109.46068 * 301.73359 * 21 20 19 40 40 H 1.08998 * 109.45198 * 181.75286 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7815 1.9998 -1.3785 5 8 0.3837 2.1977 -1.6001 6 6 0.0731 2.7835 -2.8659 7 6 -1.4198 2.9460 -2.9914 8 1 -2.0667 2.6335 -2.1850 9 6 -1.9599 3.4935 -4.1358 10 7 -1.1722 3.8744 -5.1175 11 14 -3.8105 3.6942 -4.2916 12 1 -4.4685 3.1918 -3.0588 13 1 -4.1387 5.1305 -4.4781 14 1 -4.2956 2.9196 -5.4620 15 6 1.9954 -0.7660 1.1376 16 1 1.7046 -0.2803 2.0691 17 6 1.4276 -2.1876 1.1033 18 6 2.0282 -2.9966 2.2563 19 6 3.5538 -2.9945 2.1350 20 7 4.0472 -1.6120 2.1743 21 6 3.5220 -0.8285 1.0488 22 1 -0.3634 0.5822 0.8468 23 1 -0.3633 0.4423 -0.9276 24 1 -0.3634 -1.0245 0.0808 25 1 1.4729 1.9611 0.7532 26 1 3.0609 1.3516 0.2289 27 1 2.2960 2.9596 -1.4240 28 1 2.1808 1.3368 -2.1459 29 1 0.5521 3.7596 -2.9419 30 1 0.4370 2.1369 -3.6645 31 1 -1.5520 4.2599 -5.9225 32 1 0.3435 -2.1495 1.2102 33 1 1.6845 -2.6597 0.1551 34 1 1.6611 -4.0220 2.2114 35 1 1.7380 -2.5474 3.2060 36 1 3.8438 -3.4571 1.1917 37 1 3.9845 -3.5575 2.9631 38 1 3.8246 -1.1734 3.0553 39 1 3.8121 -1.3013 0.1105 40 1 3.9297 0.1815 1.0880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385259413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:12 Heat of formation + Delta-G solvation = -69.757660 kcal Electronic energy + Delta-G solvation = -18023.661350 eV Core-core repulsion = 15258.103695 eV Total energy + Delta-G solvation = -2765.557656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53513 -38.73505 -36.86631 -34.89324 -32.79866 -31.40682 -30.14691 -29.02718 -26.43113 -24.46992 -24.22309 -23.49820 -21.88817 -21.03239 -18.63320 -17.80277 -17.25133 -16.99091 -16.47243 -16.06916 -15.85598 -15.60162 -15.35940 -14.98303 -14.50418 -14.04169 -13.81998 -13.56089 -13.29533 -13.18735 -12.96817 -12.88285 -12.70331 -12.47169 -12.36917 -12.27254 -11.91135 -11.75305 -11.66708 -11.37372 -11.17517 -10.84011 -10.16040 -9.34632 -9.27984 -8.32240 -6.44383 1.39148 1.40533 1.54966 2.34057 2.83786 3.01720 3.21599 3.44493 3.77387 3.84871 4.01023 4.12700 4.18891 4.32745 4.34421 4.46506 4.56536 4.57687 4.58348 4.65967 4.76442 4.83305 4.91997 4.96895 4.98232 5.05964 5.10434 5.15656 5.19387 5.31987 5.41027 5.54828 5.94447 5.97248 6.05418 6.27049 6.47158 6.54544 6.83252 7.27705 8.80426 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047603 B = 0.004252 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.060147 B = 6583.450827 C = 6973.375370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.539 5.539 3 C 0.064 3.936 4 C 0.058 3.942 5 O -0.399 6.399 6 C 0.209 3.791 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.982 3.018 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.051 3.949 16 H 0.034 0.966 17 C -0.115 4.115 18 C -0.148 4.148 19 C 0.055 3.945 20 N -0.685 5.685 21 C 0.068 3.932 22 H 0.014 0.986 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.113 0.887 27 H 0.048 0.952 28 H 0.042 0.958 29 H -0.017 1.017 30 H -0.018 1.018 31 H 0.270 0.730 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.346 0.654 39 H 0.071 0.929 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -12.019 15.293 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.264 5.264 3 C -0.063 4.063 4 C -0.019 4.019 5 O -0.319 6.319 6 C 0.134 3.866 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.188 1.188 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.059 4.059 16 H 0.052 0.948 17 C -0.153 4.153 18 C -0.187 4.187 19 C -0.074 4.074 20 N -0.313 5.313 21 C -0.062 4.062 22 H 0.033 0.967 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.131 0.869 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.001 0.999 30 H 0.000 1.000 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.164 0.836 39 H 0.090 0.910 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.787 -12.377 14.516 21.003 hybrid contribution -1.895 1.031 0.185 2.165 sum 6.892 -11.346 14.701 19.808 Atomic orbital electron populations 1.22495 0.87271 1.00963 1.01356 1.62012 1.08221 1.13324 1.42811 1.22226 1.01271 0.88213 0.94617 1.22573 0.83415 0.98299 0.97635 1.87836 1.23391 1.82583 1.38096 1.19783 0.95727 0.90405 0.80676 1.21397 0.92035 1.41937 1.02795 0.92047 1.25955 1.04452 0.94296 0.94559 1.70079 1.37507 1.42297 1.07175 0.85148 0.77532 0.78261 0.78524 1.18816 1.19691 1.19720 1.22463 0.97612 0.94509 0.91273 0.94770 1.21684 0.99953 0.94026 0.99622 1.22229 0.97696 1.01036 0.97760 1.22097 0.92199 0.89966 1.03145 1.60758 1.61204 1.03271 1.06078 1.22061 0.90135 0.98778 0.95259 0.96699 0.91513 0.90866 0.94756 0.86883 0.93350 0.94011 0.99879 0.99981 0.92090 0.92227 0.91912 0.90050 0.91655 0.91300 0.89029 0.83594 0.91019 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 8.82 127.69 1.13 2.04 16 2 N -0.54 -16.16 4.58 -896.74 -4.11 -20.26 16 3 C 0.06 1.94 5.38 86.30 0.46 2.40 16 4 C 0.06 2.22 6.22 71.98 0.45 2.66 16 5 O -0.40 -19.53 7.48 -148.98 -1.11 -20.64 16 6 C 0.21 11.94 5.69 71.23 0.41 12.35 16 7 C -0.54 -32.67 9.43 25.60 0.24 -32.42 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.01 0.33 5.46 84.65 0.46 0.80 16 10 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 11 Si 0.98 44.74 29.54 68.60 2.03 46.76 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.05 1.18 2.09 44.97 0.09 1.27 16 16 H 0.03 0.79 8.14 -2.38 -0.02 0.78 16 17 C -0.11 -2.39 4.87 30.67 0.15 -2.24 16 18 C -0.15 -2.21 6.08 30.65 0.19 -2.03 16 19 C 0.06 0.81 6.55 86.33 0.57 1.37 16 20 N -0.68 -11.53 6.87 -514.01 -3.53 -15.06 16 21 C 0.07 1.37 5.64 86.33 0.49 1.86 16 22 H 0.01 0.49 8.02 -2.39 -0.02 0.47 16 23 H 0.07 2.82 5.72 -2.39 -0.01 2.81 16 24 H 0.07 2.16 5.84 -2.38 -0.01 2.15 16 25 H 0.03 1.07 7.95 -2.38 -0.02 1.05 16 26 H 0.11 2.67 5.62 -2.39 -0.01 2.66 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.06 1.31 6.32 -2.39 -0.02 1.29 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.35 4.96 8.86 -89.69 -0.79 4.16 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.55 6.13 -2.39 -0.01 1.53 16 Total: -1.00 -65.86 309.43 -1.60 -67.46 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.21 Total: 10.02 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.63 Total: -11.94 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -7.35 Total: -91.65 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.11 Total: -20.64 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.86 -1.60 -67.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385259413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.302 kcal (2) G-P(sol) polarization free energy of solvation -65.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds