Wall clock time and date at job start Mon Mar 30 2020 04:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47850 * 110.99444 * 2 1 4 4 C 1.54913 * 104.79295 * 146.36316 * 3 2 1 5 5 C 1.55148 * 101.65198 * 322.93117 * 4 3 2 6 6 H 1.09000 * 110.85019 * 277.20017 * 5 4 3 7 7 C 1.52999 * 110.70263 * 154.03760 * 5 4 3 8 8 N 1.46906 * 109.46897 * 179.97438 * 7 5 4 9 9 C 1.46898 * 110.99888 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.46764 * 179.97438 * 9 8 7 11 11 O 1.42897 * 109.47046 * 65.00004 * 10 9 8 12 12 C 1.42901 * 113.99910 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47277 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47379 * 89.99608 * 17 15 13 19 19 H 1.48503 * 109.46920 * 209.99542 * 17 15 13 20 20 H 1.48505 * 109.47302 * 329.99486 * 17 15 13 21 21 C 1.47441 * 111.00071 * 120.84157 * 2 1 3 22 22 H 1.08999 * 109.47744 * 299.15402 * 1 2 3 23 23 H 1.09002 * 109.47396 * 59.15514 * 1 2 3 24 24 H 1.09000 * 109.46845 * 179.15449 * 1 2 3 25 25 H 1.08998 * 110.37779 * 265.19123 * 3 2 1 26 26 H 1.08999 * 110.37320 * 27.53739 * 3 2 1 27 27 H 1.08993 * 110.98954 * 204.83683 * 4 3 2 28 28 H 1.09003 * 110.98918 * 81.01981 * 4 3 2 29 29 H 1.09000 * 109.47486 * 59.94635 * 7 5 4 30 30 H 1.09001 * 109.47362 * 299.93912 * 7 5 4 31 31 H 1.00902 * 110.99923 * 303.95801 * 8 7 5 32 32 H 1.08995 * 109.47296 * 299.99911 * 9 8 7 33 33 H 1.08997 * 109.47334 * 60.00212 * 9 8 7 34 34 H 1.08997 * 109.46702 * 184.99892 * 10 9 8 35 35 H 1.09002 * 109.47126 * 304.99895 * 10 9 8 36 36 H 1.09001 * 109.47039 * 299.99914 * 12 11 10 37 37 H 1.09003 * 109.47349 * 59.99836 * 12 11 10 38 38 H 0.96998 * 120.00202 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.88724 * 117.33521 * 21 2 1 40 40 H 1.09002 * 109.88790 * 356.14978 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3804 0.0000 4 6 3.3047 1.3029 0.8297 5 6 2.9158 0.2822 1.9315 6 1 2.3751 0.7725 2.7411 7 6 4.1570 -0.4337 2.4680 8 7 3.7585 -1.3915 3.5082 9 6 4.9271 -2.0997 4.0473 10 6 4.4732 -3.0856 5.1257 11 8 3.6580 -4.0982 4.5326 12 6 3.1794 -5.0756 5.4587 13 6 2.3362 -6.0891 4.7287 14 1 2.1810 -5.9959 3.6640 15 6 1.7621 -7.1347 5.4202 16 7 1.9507 -7.2479 6.7167 17 14 0.7164 -8.3905 4.5153 18 1 1.5782 -9.5032 4.0416 19 1 -0.3212 -8.9245 5.4338 20 1 0.0608 -7.7421 3.3512 21 6 1.9974 -0.7057 1.1818 22 1 -0.3634 0.5006 0.8974 23 1 -0.3634 0.5269 -0.8823 24 1 -0.3633 -1.0276 -0.0152 25 1 2.2147 1.7040 -1.0182 26 1 1.2888 2.0592 0.4724 27 1 3.5493 2.2721 1.2640 28 1 4.1302 0.9283 0.2243 29 1 4.8441 0.2986 2.8919 30 1 4.6497 -0.9659 1.6543 31 1 3.2422 -0.9326 4.2437 32 1 5.4251 -2.6429 3.2442 33 1 5.6197 -1.3792 4.4825 34 1 5.3465 -3.5463 5.5874 35 1 3.8985 -2.5547 5.8846 36 1 4.0260 -5.5776 5.9270 37 1 2.5779 -4.5863 6.2249 38 1 1.5472 -7.9836 7.2032 39 1 2.5697 -1.5784 0.8674 40 1 1.1755 -1.0119 1.8290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385350789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:18 Heat of formation + Delta-G solvation = -49.637532 kcal Electronic energy + Delta-G solvation = -17440.255372 eV Core-core repulsion = 14675.570191 eV Total energy + Delta-G solvation = -2764.685182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.22934 -37.08897 -35.48466 -32.81399 -32.26526 -29.84406 -28.15490 -26.73997 -25.82035 -23.41401 -22.25478 -21.62043 -20.98518 -20.16745 -16.40786 -16.38302 -15.87434 -15.53092 -15.28155 -14.83216 -14.26654 -14.18517 -13.82895 -13.59455 -13.34056 -13.01054 -12.70030 -12.32915 -11.95894 -11.69252 -11.60182 -11.39283 -11.33446 -10.99689 -10.87430 -10.77104 -10.72431 -10.64030 -10.36800 -9.92953 -9.03424 -8.75417 -8.36552 -8.16517 -8.07903 -6.05549 -4.06288 3.34486 3.39166 3.45535 3.98606 4.16763 4.40284 4.54326 4.71226 4.79880 4.95158 5.18495 5.29425 5.31057 5.32588 5.35968 5.42139 5.51731 5.59962 5.60239 5.64915 5.76813 5.81149 5.83608 5.95984 6.03186 6.10366 6.16262 6.33948 6.37585 6.91404 7.01911 7.15113 7.21510 7.49098 7.57216 7.86718 8.22745 8.67689 9.08737 9.58491 11.06238 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.004580 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.030857 B = 6111.602723 C = 7184.671286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.041 3.959 4 C -0.124 4.124 5 C -0.106 4.106 6 H 0.071 0.929 7 C 0.071 3.929 8 N -0.675 5.675 9 C 0.066 3.934 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.193 3.807 13 C -0.510 4.510 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.056 3.944 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.337 0.663 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 18.061 -9.184 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.087 4.087 4 C -0.163 4.163 5 C -0.125 4.125 6 H 0.090 0.910 7 C -0.058 4.058 8 N -0.307 5.307 9 C -0.063 4.063 10 C -0.013 4.013 11 O -0.299 6.299 12 C 0.119 3.881 13 C -0.548 4.548 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.071 4.071 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.358 17.162 -10.131 20.068 hybrid contribution -0.401 0.408 1.382 1.496 sum 1.957 17.570 -8.749 19.725 Atomic orbital electron populations 1.22531 0.87881 1.02333 1.00102 1.63624 1.07865 1.13819 1.41039 1.23033 0.95490 0.89954 1.00176 1.22737 0.97900 0.98868 0.96779 1.22379 0.96821 0.95974 0.97371 0.91012 1.21927 0.95096 0.93189 0.95618 1.60300 1.23769 1.30642 1.15940 1.21970 0.91306 0.95084 0.97954 1.22228 0.94399 0.90551 0.94136 1.87959 1.67422 1.38234 1.36301 1.20182 0.93254 0.85815 0.88853 1.21075 1.29778 1.08255 0.95690 0.91487 1.24944 0.96751 0.97936 0.94930 1.69965 1.45130 1.31941 1.07046 0.86351 0.79784 0.81021 0.79436 1.20503 1.21159 1.19576 1.22814 0.98015 0.96982 0.89292 0.95646 0.91802 0.91098 0.90493 0.93880 0.91101 0.90437 0.95786 0.90688 0.84490 0.90367 0.95000 0.94241 0.94880 0.98035 0.97938 0.92764 0.89472 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 60.07 0.55 0.76 16 2 N -0.54 -6.49 5.44 -239.51 -1.30 -7.79 16 3 C 0.04 0.40 6.73 -2.29 -0.02 0.39 16 4 C -0.12 -1.14 6.52 -24.59 -0.16 -1.30 16 5 C -0.11 -1.16 3.13 -88.80 -0.28 -1.43 16 6 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 7 C 0.07 0.84 5.00 -3.82 -0.02 0.82 16 8 N -0.68 -9.82 6.26 -113.78 -0.71 -10.53 16 9 C 0.07 0.99 6.07 -3.82 -0.02 0.97 16 10 C 0.07 1.22 6.22 37.16 0.23 1.45 16 11 O -0.38 -9.41 10.27 -35.23 -0.36 -9.77 16 12 C 0.19 5.44 5.69 36.00 0.20 5.65 16 13 C -0.51 -15.38 9.43 -34.44 -0.32 -15.71 16 14 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 17 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.06 0.73 6.31 -2.84 -0.02 0.72 16 22 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.39 7.78 -51.93 -0.40 -0.01 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 31 H 0.34 4.63 8.73 -39.29 -0.34 4.29 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.09 1.31 7.77 -51.93 -0.40 0.90 16 40 H 0.06 0.85 7.58 -51.93 -0.39 0.45 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -31.97 325.71 -9.13 -41.10 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.42 Total: -2.30 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 0.05 Total: -6.17 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -1.28 Total: -45.02 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.97 -9.13 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385350789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.539 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds