Wall clock time and date at job start Mon Mar 30 2020 04:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47850 * 110.99444 * 2 1 4 4 C 1.54913 * 104.79295 * 146.36316 * 3 2 1 5 5 C 1.55148 * 101.65198 * 322.93117 * 4 3 2 6 6 H 1.09000 * 110.85019 * 277.20017 * 5 4 3 7 7 C 1.52999 * 110.70263 * 154.03760 * 5 4 3 8 8 N 1.46906 * 109.46897 * 179.97438 * 7 5 4 9 9 C 1.46898 * 110.99888 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.46764 * 179.97438 * 9 8 7 11 11 O 1.42897 * 109.47046 * 65.00004 * 10 9 8 12 12 C 1.42901 * 113.99910 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47277 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47379 * 89.99608 * 17 15 13 19 19 H 1.48503 * 109.46920 * 209.99542 * 17 15 13 20 20 H 1.48505 * 109.47302 * 329.99486 * 17 15 13 21 21 C 1.47441 * 111.00071 * 120.84157 * 2 1 3 22 22 H 1.08999 * 109.47744 * 299.15402 * 1 2 3 23 23 H 1.09002 * 109.47396 * 59.15514 * 1 2 3 24 24 H 1.09000 * 109.46845 * 179.15449 * 1 2 3 25 25 H 1.08998 * 110.37779 * 265.19123 * 3 2 1 26 26 H 1.08999 * 110.37320 * 27.53739 * 3 2 1 27 27 H 1.08993 * 110.98954 * 204.83683 * 4 3 2 28 28 H 1.09003 * 110.98918 * 81.01981 * 4 3 2 29 29 H 1.09000 * 109.47486 * 59.94635 * 7 5 4 30 30 H 1.09001 * 109.47362 * 299.93912 * 7 5 4 31 31 H 1.00902 * 110.99923 * 303.95801 * 8 7 5 32 32 H 1.08995 * 109.47296 * 299.99911 * 9 8 7 33 33 H 1.08997 * 109.47334 * 60.00212 * 9 8 7 34 34 H 1.08997 * 109.46702 * 184.99892 * 10 9 8 35 35 H 1.09002 * 109.47126 * 304.99895 * 10 9 8 36 36 H 1.09001 * 109.47039 * 299.99914 * 12 11 10 37 37 H 1.09003 * 109.47349 * 59.99836 * 12 11 10 38 38 H 0.96998 * 120.00202 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.88724 * 117.33521 * 21 2 1 40 40 H 1.09002 * 109.88790 * 356.14978 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3804 0.0000 4 6 3.3047 1.3029 0.8297 5 6 2.9158 0.2822 1.9315 6 1 2.3751 0.7725 2.7411 7 6 4.1570 -0.4337 2.4680 8 7 3.7585 -1.3915 3.5082 9 6 4.9271 -2.0997 4.0473 10 6 4.4732 -3.0856 5.1257 11 8 3.6580 -4.0982 4.5326 12 6 3.1794 -5.0756 5.4587 13 6 2.3362 -6.0891 4.7287 14 1 2.1810 -5.9959 3.6640 15 6 1.7621 -7.1347 5.4202 16 7 1.9507 -7.2479 6.7167 17 14 0.7164 -8.3905 4.5153 18 1 1.5782 -9.5032 4.0416 19 1 -0.3212 -8.9245 5.4338 20 1 0.0608 -7.7421 3.3512 21 6 1.9974 -0.7057 1.1818 22 1 -0.3634 0.5006 0.8974 23 1 -0.3634 0.5269 -0.8823 24 1 -0.3633 -1.0276 -0.0152 25 1 2.2147 1.7040 -1.0182 26 1 1.2888 2.0592 0.4724 27 1 3.5493 2.2721 1.2640 28 1 4.1302 0.9283 0.2243 29 1 4.8441 0.2986 2.8919 30 1 4.6497 -0.9659 1.6543 31 1 3.2422 -0.9326 4.2437 32 1 5.4251 -2.6429 3.2442 33 1 5.6197 -1.3792 4.4825 34 1 5.3465 -3.5463 5.5874 35 1 3.8985 -2.5547 5.8846 36 1 4.0260 -5.5776 5.9270 37 1 2.5779 -4.5863 6.2249 38 1 1.5472 -7.9836 7.2032 39 1 2.5697 -1.5784 0.8674 40 1 1.1755 -1.0119 1.8290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385350789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:18 Heat of formation + Delta-G solvation = -73.770774 kcal Electronic energy + Delta-G solvation = -17441.301868 eV Core-core repulsion = 14675.570191 eV Total energy + Delta-G solvation = -2765.731677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12682 -38.75440 -36.81703 -34.90377 -33.40788 -30.96516 -29.62598 -28.48241 -26.85856 -24.56068 -24.32009 -22.90135 -21.86410 -21.11730 -18.62422 -17.60012 -17.18640 -16.82946 -16.69120 -16.31864 -15.84949 -15.32485 -15.09842 -14.92277 -14.50940 -14.25105 -13.83606 -13.66283 -13.48044 -13.07294 -12.89270 -12.72452 -12.54762 -12.49888 -12.30772 -12.21887 -12.01284 -11.74551 -11.61286 -11.51894 -11.24820 -10.85411 -10.18186 -9.29076 -9.20532 -8.31548 -6.43301 1.39667 1.42597 1.54932 2.35666 3.02136 3.11648 3.14104 3.26962 3.71422 3.82113 3.93903 4.23658 4.26913 4.39795 4.45267 4.48084 4.51699 4.54770 4.58769 4.68682 4.71841 4.79214 4.83963 4.87849 4.97022 5.00770 5.04220 5.13702 5.18815 5.20344 5.41450 5.56310 5.98165 6.01259 6.12407 6.16054 6.48803 6.59090 6.87715 7.29091 8.80933 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.004580 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.030857 B = 6111.602723 C = 7184.671286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.556 5.556 3 C 0.039 3.961 4 C -0.116 4.116 5 C -0.100 4.100 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.699 5.699 9 C 0.077 3.923 10 C 0.054 3.946 11 O -0.397 6.397 12 C 0.208 3.792 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.982 3.018 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.266 1.266 21 C 0.059 3.941 22 H 0.027 0.973 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.341 0.659 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.039 0.961 36 H -0.016 1.016 37 H -0.017 1.017 38 H 0.271 0.729 39 H 0.059 0.941 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 19.142 -10.004 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.280 5.280 3 C -0.088 4.088 4 C -0.154 4.154 5 C -0.120 4.120 6 H 0.094 0.906 7 C -0.052 4.052 8 N -0.332 5.332 9 C -0.052 4.052 10 C -0.023 4.023 11 O -0.317 6.317 12 C 0.133 3.867 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.804 3.196 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.191 1.191 21 C -0.069 4.069 22 H 0.046 0.954 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.394 18.272 -10.954 21.438 hybrid contribution -0.372 0.137 1.655 1.702 sum 2.022 18.409 -9.299 20.723 Atomic orbital electron populations 1.22536 0.87274 1.01964 1.01009 1.63590 1.08634 1.15404 1.40411 1.23130 0.95851 0.88684 1.01112 1.22725 0.97556 0.99253 0.95866 1.22336 0.96080 0.95796 0.97801 0.90570 1.21901 0.95717 0.92979 0.94558 1.60247 1.24113 1.32079 1.16719 1.21856 0.91883 0.94824 0.96657 1.22613 0.93866 0.89966 0.95882 1.87915 1.68482 1.38920 1.36341 1.19795 0.92108 0.86152 0.88623 1.21383 1.31469 1.09914 0.95613 0.92340 1.25937 0.97587 0.99778 0.95806 1.70064 1.45636 1.32805 1.08578 0.85207 0.78056 0.78050 0.78249 1.19186 1.19752 1.19081 1.22661 0.97531 0.97057 0.89666 0.95402 0.90109 0.92229 0.89407 0.92991 0.88801 0.90386 0.93487 0.91539 0.84082 0.91162 0.91300 0.93462 0.94264 0.99850 0.99881 0.92053 0.92211 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.12 127.69 1.16 1.59 16 2 N -0.56 -13.03 5.44 -911.68 -4.96 -17.99 16 3 C 0.04 0.69 6.73 86.77 0.58 1.27 16 4 C -0.12 -1.83 6.52 31.98 0.21 -1.62 16 5 C -0.10 -2.06 3.13 -9.61 -0.03 -2.09 16 6 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 7 C 0.08 1.69 5.00 86.30 0.43 2.12 16 8 N -0.70 -19.83 6.26 -513.88 -3.22 -23.05 16 9 C 0.08 2.21 6.07 86.31 0.52 2.73 16 10 C 0.05 2.02 6.22 71.98 0.45 2.47 16 11 O -0.40 -20.17 10.27 -148.98 -1.53 -21.70 16 12 C 0.21 12.13 5.69 71.23 0.41 12.53 16 13 C -0.55 -33.71 9.43 25.60 0.24 -33.47 16 14 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 15 C 0.01 0.43 5.46 84.66 0.46 0.89 16 16 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 17 Si 0.98 45.57 29.54 68.60 2.03 47.60 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.06 1.55 6.31 86.65 0.55 2.10 16 22 H 0.03 0.55 8.10 -2.39 -0.02 0.53 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 0.82 7.78 -2.39 -0.02 0.80 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 31 H 0.34 9.09 8.73 -89.69 -0.78 8.30 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.06 1.88 7.77 -2.39 -0.02 1.86 16 40 H 0.04 1.18 7.58 -2.39 -0.02 1.16 16 Total: -1.00 -69.38 325.71 -2.22 -71.60 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.20 Total: 11.81 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 4.99 Total: -11.47 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -7.89 Total: -97.84 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.53 Total: -21.70 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -69.38 -2.22 -71.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385350789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.174 kcal (2) G-P(sol) polarization free energy of solvation -69.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds