Wall clock time and date at job start Mon Mar 30 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48534 * 111.00091 * 2 1 4 4 C 1.54937 * 103.22628 * 200.27519 * 3 2 1 5 5 C 1.54599 * 102.92072 * 37.41458 * 4 3 2 6 6 H 1.09007 * 110.39185 * 96.99577 * 5 4 3 7 7 C 1.52990 * 110.31058 * 219.12332 * 5 4 3 8 8 N 1.46907 * 109.47473 * 182.17039 * 7 5 4 9 9 C 1.46897 * 110.99994 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46573 * 179.97438 * 9 8 7 11 11 O 1.42901 * 109.46804 * 65.00294 * 10 9 8 12 12 C 1.42899 * 113.99607 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46876 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.47896 * 111.00228 * 242.60135 * 2 1 3 22 22 H 1.08997 * 109.47257 * 177.39776 * 1 2 3 23 23 H 1.09005 * 109.47369 * 297.39736 * 1 2 3 24 24 H 1.09007 * 109.46996 * 57.39689 * 1 2 3 25 25 H 1.08997 * 110.66701 * 318.71673 * 3 2 1 26 26 H 1.09003 * 110.66512 * 81.67934 * 3 2 1 27 27 H 1.08992 * 110.72645 * 279.05971 * 4 3 2 28 28 H 1.09001 * 110.72493 * 155.76999 * 4 3 2 29 29 H 1.09004 * 109.46899 * 62.16967 * 7 5 4 30 30 H 1.09005 * 109.47482 * 302.16867 * 7 5 4 31 31 H 1.00905 * 110.99603 * 303.95484 * 8 7 5 32 32 H 1.08997 * 109.47142 * 60.00213 * 9 8 7 33 33 H 1.08995 * 109.47294 * 299.99820 * 9 8 7 34 34 H 1.08995 * 109.47721 * 304.99997 * 10 9 8 35 35 H 1.09001 * 109.46499 * 184.99873 * 10 9 8 36 36 H 1.09004 * 109.47206 * 60.00168 * 12 11 10 37 37 H 1.08994 * 109.47548 * 299.99825 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.91688 * 26.49300 * 21 2 1 40 40 H 1.08999 * 109.91701 * 265.20490 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1052 -1.5930 6 1 3.2143 0.5470 -2.5860 7 6 4.4895 -0.8532 -1.5382 8 7 4.3537 -1.8643 -2.5952 9 6 5.4822 -2.8045 -2.5726 10 6 5.3052 -3.8403 -3.6847 11 8 5.3790 -3.1916 -4.9559 12 6 5.2257 -4.0747 -6.0688 13 6 5.3193 -3.2882 -7.3508 14 1 5.4803 -2.2207 -7.3189 15 6 5.2058 -3.9323 -8.5647 16 7 5.0101 -5.2322 -8.6035 17 14 5.3295 -2.9584 -10.1538 18 1 6.6548 -2.2919 -10.2241 19 1 5.1750 -3.8769 -11.3105 20 1 4.2568 -1.9322 -10.1905 21 6 1.9991 -0.6354 -1.2258 22 1 -0.3633 -1.0266 -0.0467 23 1 -0.3634 0.4729 0.9124 24 1 -0.3633 0.5538 -0.8658 25 1 1.4237 2.0205 -0.6729 26 1 2.0014 1.7987 1.0092 27 1 4.1115 0.8835 0.2788 28 1 3.8124 2.1351 -0.9715 29 1 4.5155 -1.3452 -0.5659 30 1 5.4132 -0.2938 -1.6871 31 1 3.4744 -2.3532 -2.5171 32 1 5.5145 -3.3100 -1.6075 33 1 6.4128 -2.2589 -2.7284 34 1 4.3343 -4.3242 -3.5796 35 1 6.0941 -4.5890 -3.6125 36 1 4.2531 -4.5638 -6.0132 37 1 6.0130 -4.8281 -6.0460 38 1 4.9298 -5.6853 -9.4574 39 1 1.2759 -0.5403 -2.0358 40 1 2.2121 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385350793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:20 Heat of formation + Delta-G solvation = -49.239759 kcal Electronic energy + Delta-G solvation = -17323.316627 eV Core-core repulsion = 14558.648695 eV Total energy + Delta-G solvation = -2764.667933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35769 -37.07028 -35.48408 -32.86082 -32.34334 -29.89551 -28.14161 -26.78184 -25.93897 -23.50077 -22.25689 -21.71032 -21.05809 -19.99409 -16.74419 -16.31775 -15.91986 -15.62968 -15.25874 -14.78340 -14.43509 -14.25347 -13.86607 -13.59095 -13.20231 -13.10966 -12.77183 -12.41613 -11.96380 -11.81723 -11.67920 -11.56874 -11.33429 -11.04000 -10.83133 -10.76771 -10.72834 -10.63842 -10.35358 -9.92832 -9.04488 -8.74816 -8.66844 -8.14800 -8.07199 -6.05475 -4.06352 3.36148 3.38180 3.42716 3.83028 4.22046 4.39900 4.49437 4.56055 4.83676 4.95869 5.11236 5.14735 5.20108 5.30066 5.30867 5.36202 5.48461 5.56947 5.58225 5.63305 5.67474 5.74810 5.81396 5.86050 5.98941 6.07738 6.14661 6.15842 6.35250 6.66266 6.78804 7.16078 7.24473 7.49720 7.60225 7.86287 8.22917 8.68191 9.08320 9.58238 11.06239 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.003794 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.988207 B = 7378.761700 C = 7689.854308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.033 3.967 4 C -0.118 4.118 5 C -0.097 4.097 6 H 0.087 0.913 7 C 0.070 3.930 8 N -0.678 5.678 9 C 0.065 3.935 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.038 3.962 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.337 0.663 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.264 0.736 39 H 0.049 0.951 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 9.940 18.108 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.249 5.249 3 C -0.095 4.095 4 C -0.156 4.156 5 C -0.117 4.117 6 H 0.106 0.894 7 C -0.059 4.059 8 N -0.309 5.309 9 C -0.064 4.064 10 C -0.013 4.013 11 O -0.300 6.300 12 C 0.119 3.881 13 C -0.549 4.549 14 H 0.084 0.916 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.090 4.090 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.178 10.082 17.926 21.209 hybrid contribution -0.594 -0.139 -0.816 1.019 sum -5.772 9.944 17.111 20.615 Atomic orbital electron populations 1.22516 0.88021 1.02100 1.00741 1.64748 1.08012 1.14949 1.37205 1.23244 0.95338 0.89973 1.00902 1.22522 0.96331 0.98503 0.98292 1.22057 0.94202 0.95641 0.99776 0.89416 1.21967 0.97963 0.93626 0.92353 1.60355 1.04986 1.17343 1.48245 1.21972 0.95181 0.93649 0.95573 1.22236 0.98808 0.93781 0.86515 1.87955 1.93642 1.35898 1.12497 1.20176 0.94948 0.89679 0.83280 1.21042 1.49207 0.95268 0.89416 0.91560 1.24951 0.95265 0.95042 0.99325 1.69961 1.49800 1.08114 1.26177 0.86398 0.78834 0.79511 0.81728 1.20039 1.21229 1.20026 1.22969 0.95986 0.99355 0.90657 0.91301 0.91449 0.95328 0.93739 0.90190 0.90654 0.90811 0.95360 0.90955 0.84421 0.94903 0.90407 0.94848 0.94204 0.97921 0.98007 0.92697 0.93292 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.06 0.56 0.70 16 2 N -0.53 -5.44 5.55 -238.72 -1.33 -6.77 16 3 C 0.03 0.30 6.56 -1.90 -0.01 0.29 16 4 C -0.12 -1.08 6.61 -24.87 -0.16 -1.24 16 5 C -0.10 -1.08 3.25 -89.27 -0.29 -1.37 16 6 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 7 C 0.07 0.85 4.86 -3.83 -0.02 0.83 16 8 N -0.68 -10.18 6.45 -113.78 -0.73 -10.91 16 9 C 0.07 1.00 6.07 -3.82 -0.02 0.98 16 10 C 0.06 1.23 6.22 37.16 0.23 1.46 16 11 O -0.38 -9.52 10.27 -35.23 -0.36 -9.88 16 12 C 0.19 5.47 5.69 36.01 0.20 5.68 16 13 C -0.51 -15.47 9.43 -34.44 -0.32 -15.80 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 17 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.04 0.42 5.90 -2.76 -0.02 0.40 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 25 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.67 7.86 -51.93 -0.41 0.27 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.34 4.82 7.38 -39.29 -0.29 4.53 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.05 0.55 7.73 -51.93 -0.40 0.15 16 40 H 0.08 0.87 6.84 -51.93 -0.36 0.51 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -32.18 323.61 -9.10 -41.28 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.33 Total: -2.58 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 0.05 Total: -6.54 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -1.32 Total: -44.42 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.18 -9.10 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385350793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.955 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds