Wall clock time and date at job start Mon Mar 30 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48534 * 111.00091 * 2 1 4 4 C 1.54937 * 103.22628 * 200.27519 * 3 2 1 5 5 C 1.54599 * 102.92072 * 37.41458 * 4 3 2 6 6 H 1.09007 * 110.39185 * 96.99577 * 5 4 3 7 7 C 1.52990 * 110.31058 * 219.12332 * 5 4 3 8 8 N 1.46907 * 109.47473 * 182.17039 * 7 5 4 9 9 C 1.46897 * 110.99994 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46573 * 179.97438 * 9 8 7 11 11 O 1.42901 * 109.46804 * 65.00294 * 10 9 8 12 12 C 1.42899 * 113.99607 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46876 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.47896 * 111.00228 * 242.60135 * 2 1 3 22 22 H 1.08997 * 109.47257 * 177.39776 * 1 2 3 23 23 H 1.09005 * 109.47369 * 297.39736 * 1 2 3 24 24 H 1.09007 * 109.46996 * 57.39689 * 1 2 3 25 25 H 1.08997 * 110.66701 * 318.71673 * 3 2 1 26 26 H 1.09003 * 110.66512 * 81.67934 * 3 2 1 27 27 H 1.08992 * 110.72645 * 279.05971 * 4 3 2 28 28 H 1.09001 * 110.72493 * 155.76999 * 4 3 2 29 29 H 1.09004 * 109.46899 * 62.16967 * 7 5 4 30 30 H 1.09005 * 109.47482 * 302.16867 * 7 5 4 31 31 H 1.00905 * 110.99603 * 303.95484 * 8 7 5 32 32 H 1.08997 * 109.47142 * 60.00213 * 9 8 7 33 33 H 1.08995 * 109.47294 * 299.99820 * 9 8 7 34 34 H 1.08995 * 109.47721 * 304.99997 * 10 9 8 35 35 H 1.09001 * 109.46499 * 184.99873 * 10 9 8 36 36 H 1.09004 * 109.47206 * 60.00168 * 12 11 10 37 37 H 1.08994 * 109.47548 * 299.99825 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.91688 * 26.49300 * 21 2 1 40 40 H 1.08999 * 109.91701 * 265.20490 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1052 -1.5930 6 1 3.2143 0.5470 -2.5860 7 6 4.4895 -0.8532 -1.5382 8 7 4.3537 -1.8643 -2.5952 9 6 5.4822 -2.8045 -2.5726 10 6 5.3052 -3.8403 -3.6847 11 8 5.3790 -3.1916 -4.9559 12 6 5.2257 -4.0747 -6.0688 13 6 5.3193 -3.2882 -7.3508 14 1 5.4803 -2.2207 -7.3189 15 6 5.2058 -3.9323 -8.5647 16 7 5.0101 -5.2322 -8.6035 17 14 5.3295 -2.9584 -10.1538 18 1 6.6548 -2.2919 -10.2241 19 1 5.1750 -3.8769 -11.3105 20 1 4.2568 -1.9322 -10.1905 21 6 1.9991 -0.6354 -1.2258 22 1 -0.3633 -1.0266 -0.0467 23 1 -0.3634 0.4729 0.9124 24 1 -0.3633 0.5538 -0.8658 25 1 1.4237 2.0205 -0.6729 26 1 2.0014 1.7987 1.0092 27 1 4.1115 0.8835 0.2788 28 1 3.8124 2.1351 -0.9715 29 1 4.5155 -1.3452 -0.5659 30 1 5.4132 -0.2938 -1.6871 31 1 3.4744 -2.3532 -2.5171 32 1 5.5145 -3.3100 -1.6075 33 1 6.4128 -2.2589 -2.7284 34 1 4.3343 -4.3242 -3.5796 35 1 6.0941 -4.5890 -3.6125 36 1 4.2531 -4.5638 -6.0132 37 1 6.0130 -4.8281 -6.0460 38 1 4.9298 -5.6853 -9.4574 39 1 1.2759 -0.5403 -2.0358 40 1 2.2121 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385350793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:20 Heat of formation + Delta-G solvation = -73.467273 kcal Electronic energy + Delta-G solvation = -17324.367211 eV Core-core repulsion = 14558.648695 eV Total energy + Delta-G solvation = -2765.718517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19085 -38.74951 -36.80665 -34.90456 -33.48000 -31.00134 -29.58847 -28.45454 -26.92266 -24.57338 -24.35645 -22.95627 -21.95115 -20.87933 -18.63373 -17.76336 -17.30519 -16.81357 -16.68836 -16.35253 -15.79781 -15.26351 -15.15332 -15.05678 -14.52054 -14.10243 -13.85296 -13.60557 -13.55701 -13.06997 -12.95996 -12.71233 -12.65675 -12.43081 -12.29450 -12.27151 -12.06086 -11.71963 -11.59871 -11.46372 -11.26056 -10.85032 -10.18651 -9.45068 -9.25469 -8.31190 -6.43329 1.39982 1.45201 1.53578 2.35864 3.02325 3.05991 3.18115 3.26528 3.68119 3.74402 4.00144 4.20368 4.26677 4.33539 4.42882 4.45912 4.48761 4.57287 4.57804 4.64518 4.70056 4.81738 4.83685 4.92071 4.95940 4.97035 5.00612 5.07184 5.17376 5.20101 5.31359 5.56083 5.87337 5.98140 6.04234 6.13459 6.46628 6.58499 6.86994 7.28912 8.81070 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.003794 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.988207 B = 7378.761700 C = 7689.854308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.033 3.967 4 C -0.112 4.112 5 C -0.096 4.096 6 H 0.070 0.930 7 C 0.077 3.923 8 N -0.700 5.700 9 C 0.075 3.925 10 C 0.054 3.946 11 O -0.397 6.397 12 C 0.208 3.792 13 C -0.548 4.548 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.984 3.016 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.266 1.266 21 C 0.040 3.960 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.027 0.973 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.339 0.661 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.048 0.952 36 H -0.017 1.017 37 H -0.016 1.016 38 H 0.271 0.729 39 H 0.040 0.960 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 11.113 18.547 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.260 5.260 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.115 4.115 6 H 0.089 0.911 7 C -0.052 4.052 8 N -0.333 5.333 9 C -0.054 4.054 10 C -0.023 4.023 11 O -0.316 6.316 12 C 0.133 3.867 13 C -0.586 4.586 14 H 0.078 0.922 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.191 1.191 21 C -0.088 4.088 22 H 0.087 0.913 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.188 11.259 18.400 22.186 hybrid contribution -0.614 -0.546 -0.856 1.187 sum -5.803 10.713 17.543 21.359 Atomic orbital electron populations 1.22558 0.87181 1.02309 1.01403 1.64767 1.08950 1.15780 1.36528 1.23306 0.95023 0.89342 1.01757 1.22514 0.96705 0.98143 0.97717 1.22000 0.93876 0.96030 0.99613 0.91136 1.21954 0.98327 0.93020 0.91911 1.60336 1.04956 1.17886 1.50077 1.21873 0.95130 0.93049 0.95329 1.22610 0.99443 0.95328 0.84943 1.87908 1.93677 1.36179 1.13883 1.19799 0.93068 0.89388 0.84442 1.21372 1.50914 0.95293 0.90990 0.92182 1.25974 0.93943 0.96190 1.03146 1.70068 1.49585 1.09793 1.27661 0.85231 0.79362 0.78127 0.76661 1.18966 1.19865 1.19081 1.22899 0.95822 0.99219 0.90847 0.91324 0.90081 0.95398 0.93596 0.88797 0.90117 0.89776 0.94232 0.91037 0.84204 0.91507 0.90861 0.94358 0.93338 0.99921 0.99821 0.92045 0.94203 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.40 127.69 1.20 1.43 16 2 N -0.54 -10.37 5.55 -909.16 -5.05 -15.42 16 3 C 0.03 0.54 6.56 86.65 0.57 1.10 16 4 C -0.11 -1.85 6.61 31.80 0.21 -1.64 16 5 C -0.10 -2.04 3.25 -9.92 -0.03 -2.07 16 6 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 7 C 0.08 1.76 4.86 86.30 0.42 2.18 16 8 N -0.70 -20.58 6.45 -513.88 -3.32 -23.89 16 9 C 0.08 2.23 6.07 86.31 0.52 2.75 16 10 C 0.05 2.05 6.22 71.98 0.45 2.50 16 11 O -0.40 -20.23 10.27 -148.98 -1.53 -21.76 16 12 C 0.21 12.13 5.69 71.24 0.41 12.54 16 13 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 14 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 15 C 0.01 0.34 5.46 84.66 0.46 0.80 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 17 Si 0.98 45.31 29.54 68.60 2.03 47.34 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.04 0.86 5.90 86.45 0.51 1.37 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.03 0.45 8.00 -2.38 -0.02 0.43 16 25 H 0.05 0.73 7.96 -2.39 -0.02 0.71 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.26 7.86 -2.39 -0.02 1.24 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.34 9.58 7.38 -89.69 -0.66 8.92 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.04 0.90 7.73 -2.39 -0.02 0.89 16 40 H 0.07 1.58 6.84 -2.39 -0.02 1.57 16 Total: -1.00 -68.62 323.61 -2.30 -70.93 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.32 Total: 12.19 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.96 Total: -12.55 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -8.08 Total: -96.16 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.53 Total: -21.76 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.62 -2.30 -70.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385350793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.538 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds