Wall clock time and date at job start Mon Mar 30 2020 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.08999 * 110.66371 * 318.88179 * 6 2 1 8 8 C 1.53000 * 110.66887 * 81.84288 * 6 2 1 9 9 N 1.46900 * 109.47115 * 303.54958 * 8 6 2 10 10 C 1.46900 * 110.99922 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47287 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.47058 * 65.00173 * 11 10 9 13 13 C 1.42895 * 114.00004 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00104 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99632 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00080 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47135 * 119.99861 * 18 16 14 21 21 H 1.48492 * 109.46883 * 239.99914 * 18 16 14 22 22 H 1.09001 * 109.46958 * 59.87359 * 1 2 3 23 23 H 1.08998 * 109.46822 * 179.87272 * 1 2 3 24 24 H 1.09001 * 109.47005 * 299.86748 * 1 2 3 25 25 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 26 26 H 1.08997 * 109.91908 * 265.19336 * 3 2 1 27 27 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 28 28 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 29 29 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 30 30 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 31 31 H 1.09002 * 109.46765 * 63.54373 * 8 6 2 32 32 H 1.09002 * 109.47042 * 183.54804 * 8 6 2 33 33 H 1.00898 * 111.00111 * 303.94836 * 9 8 6 34 34 H 1.08996 * 109.47171 * 300.00227 * 10 9 8 35 35 H 1.09000 * 109.46935 * 59.99696 * 10 9 8 36 36 H 1.08996 * 109.47138 * 184.99928 * 11 10 9 37 37 H 1.08999 * 109.46931 * 305.00198 * 11 10 9 38 38 H 1.08996 * 109.47420 * 300.00084 * 13 12 11 39 39 H 1.08998 * 109.46910 * 60.00177 * 13 12 11 40 40 H 0.96998 * 119.99449 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4220 -0.3347 2.1030 8 6 2.0053 -2.1617 1.0912 9 7 0.6475 -2.6285 0.7809 10 6 0.6129 -4.0901 0.6386 11 6 -0.8144 -4.5377 0.3171 12 8 -1.1983 -4.0243 -0.9601 13 6 -2.5223 -4.3859 -1.3578 14 6 -2.8196 -3.7937 -2.7112 15 1 -2.0720 -3.2008 -3.2174 16 6 -4.0461 -4.0086 -3.3035 17 7 -4.9562 -4.7309 -2.6874 18 14 -4.4143 -3.2751 -4.9816 19 1 -3.2330 -2.5119 -5.4582 20 1 -4.7190 -4.3656 -5.9424 21 1 -5.5834 -2.3654 -4.8783 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3633 -1.0277 -0.0023 24 1 -0.3633 0.5118 0.8912 25 1 1.2758 2.0561 0.4572 26 1 2.2122 1.6967 -1.0212 27 1 4.1470 1.6456 0.2024 28 1 3.2142 2.0442 1.6757 29 1 4.1138 -0.6534 0.6594 30 1 3.8132 -0.1172 2.3451 31 1 2.6816 -2.4509 0.2867 32 1 2.3394 -2.6115 2.0262 33 1 -0.0104 -2.3173 1.4799 34 1 1.2795 -4.3924 -0.1691 35 1 0.9375 -4.5537 1.5702 36 1 -0.8584 -5.6266 0.2991 37 1 -1.4944 -4.1591 1.0802 38 1 -2.6022 -5.4716 -1.4103 39 1 -3.2375 -4.0037 -0.6294 40 1 -5.8189 -4.8824 -3.1042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:13 Heat of formation + Delta-G solvation = -41.600536 kcal Electronic energy + Delta-G solvation = -17821.301616 eV Core-core repulsion = 15056.964945 eV Total energy + Delta-G solvation = -2764.336671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17767 -36.98965 -35.17529 -32.63243 -32.02582 -30.65320 -28.02268 -26.52405 -25.45723 -23.43860 -22.23127 -21.57473 -20.78318 -20.14712 -16.38786 -16.26882 -15.88051 -15.40676 -15.27443 -14.78453 -14.34928 -14.08098 -13.77419 -13.48404 -13.18718 -12.72447 -12.47221 -12.32011 -11.84162 -11.66138 -11.38101 -11.32270 -11.21123 -10.94456 -10.86044 -10.72876 -10.66711 -10.57319 -10.34289 -9.90413 -8.99715 -8.73924 -8.24426 -8.07831 -7.96898 -6.04058 -4.04377 3.34338 3.40684 3.48524 4.07470 4.24801 4.42077 4.63739 4.76396 4.89296 4.95440 5.11063 5.31958 5.32733 5.42536 5.47106 5.58338 5.64014 5.68889 5.72525 5.76832 5.84535 5.89603 5.89972 6.05210 6.11445 6.14408 6.18795 6.37051 6.73053 7.08872 7.17796 7.28370 7.31123 7.50894 7.59953 7.89121 8.24778 8.69897 9.11458 9.60449 11.07784 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.004910 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.748581 B = 5700.842650 C = 6542.164372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.499 5.499 3 C 0.030 3.970 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.065 3.935 7 H 0.046 0.954 8 C 0.075 3.925 9 N -0.667 5.667 10 C 0.064 3.936 11 C 0.065 3.935 12 O -0.378 6.378 13 C 0.193 3.807 14 C -0.507 4.507 15 H 0.068 0.932 16 C 0.055 3.945 17 N -0.902 5.902 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.011 0.989 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.333 0.667 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.747 8.325 10.694 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.223 5.223 3 C -0.098 4.098 4 C -0.168 4.168 5 C -0.156 4.156 6 C -0.044 4.044 7 H 0.064 0.936 8 C -0.054 4.054 9 N -0.298 5.298 10 C -0.064 4.064 11 C -0.013 4.013 12 O -0.297 6.297 13 C 0.119 3.881 14 C -0.546 4.546 15 H 0.086 0.914 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.079 0.921 23 H 0.134 0.866 24 H 0.029 0.971 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.893 8.192 9.395 19.421 hybrid contribution -0.858 0.360 1.010 1.374 sum 14.035 8.552 10.405 19.452 Atomic orbital electron populations 1.22885 0.86411 1.05867 0.99012 1.64598 1.09408 1.12806 1.35445 1.22920 0.95406 0.91107 1.00379 1.22378 0.98133 0.96875 0.99431 1.22507 0.96283 0.95827 1.01002 1.22824 0.94933 0.94730 0.91884 0.93565 1.21900 0.91598 0.92977 0.98948 1.60443 1.06130 1.11165 1.52027 1.21991 0.97601 0.87548 0.99306 1.22226 0.93946 0.96527 0.88601 1.87974 1.34798 1.75101 1.31870 1.20180 0.78061 0.94598 0.95296 1.21120 0.99483 1.31984 1.01969 0.91386 1.24945 0.95788 0.95449 0.98410 1.69981 1.06026 1.39536 1.38591 0.86309 0.78319 0.78835 0.83230 1.19399 1.20955 1.20937 0.92062 0.86557 0.97094 0.94284 0.90576 0.91157 0.91923 0.90518 0.91391 0.90271 0.95633 0.84858 0.90300 0.95094 0.94313 0.94971 0.98081 0.97976 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.04 60.07 0.54 0.64 16 2 N -0.50 -6.96 5.23 -230.74 -1.21 -8.17 16 3 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 4 C -0.13 -1.20 6.92 -25.37 -0.18 -1.38 16 5 C -0.12 -1.12 6.52 -24.79 -0.16 -1.28 16 6 C 0.07 0.77 2.71 -65.70 -0.18 0.59 16 7 H 0.05 0.54 7.96 -51.93 -0.41 0.12 16 8 C 0.08 0.93 5.49 -3.82 -0.02 0.91 16 9 N -0.67 -9.81 3.92 -113.78 -0.45 -10.26 16 10 C 0.06 0.97 6.07 -3.82 -0.02 0.95 16 11 C 0.07 1.22 6.22 37.16 0.23 1.45 16 12 O -0.38 -9.32 10.27 -35.23 -0.36 -9.68 16 13 C 0.19 5.41 5.69 36.00 0.20 5.61 16 14 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 15 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.12 2.02 5.28 -51.93 -0.27 1.75 16 24 H 0.01 0.15 8.00 -51.93 -0.42 -0.27 16 25 H 0.04 0.44 7.73 -51.93 -0.40 0.04 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.74 7.98 -51.93 -0.41 0.33 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.33 4.62 8.20 -39.29 -0.32 4.30 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -31.87 320.82 -8.76 -40.63 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.28 Total: -1.69 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.02 Total: -6.27 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.92 Total: -45.12 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.36 Total: -9.68 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.87 -8.76 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.974 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds