Wall clock time and date at job start Mon Mar 30 2020 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.08999 * 110.66371 * 318.88179 * 6 2 1 8 8 C 1.53000 * 110.66887 * 81.84288 * 6 2 1 9 9 N 1.46900 * 109.47115 * 303.54958 * 8 6 2 10 10 C 1.46900 * 110.99922 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47287 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.47058 * 65.00173 * 11 10 9 13 13 C 1.42895 * 114.00004 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00104 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99632 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00080 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47135 * 119.99861 * 18 16 14 21 21 H 1.48492 * 109.46883 * 239.99914 * 18 16 14 22 22 H 1.09001 * 109.46958 * 59.87359 * 1 2 3 23 23 H 1.08998 * 109.46822 * 179.87272 * 1 2 3 24 24 H 1.09001 * 109.47005 * 299.86748 * 1 2 3 25 25 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 26 26 H 1.08997 * 109.91908 * 265.19336 * 3 2 1 27 27 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 28 28 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 29 29 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 30 30 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 31 31 H 1.09002 * 109.46765 * 63.54373 * 8 6 2 32 32 H 1.09002 * 109.47042 * 183.54804 * 8 6 2 33 33 H 1.00898 * 111.00111 * 303.94836 * 9 8 6 34 34 H 1.08996 * 109.47171 * 300.00227 * 10 9 8 35 35 H 1.09000 * 109.46935 * 59.99696 * 10 9 8 36 36 H 1.08996 * 109.47138 * 184.99928 * 11 10 9 37 37 H 1.08999 * 109.46931 * 305.00198 * 11 10 9 38 38 H 1.08996 * 109.47420 * 300.00084 * 13 12 11 39 39 H 1.08998 * 109.46910 * 60.00177 * 13 12 11 40 40 H 0.96998 * 119.99449 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4220 -0.3347 2.1030 8 6 2.0053 -2.1617 1.0912 9 7 0.6475 -2.6285 0.7809 10 6 0.6129 -4.0901 0.6386 11 6 -0.8144 -4.5377 0.3171 12 8 -1.1983 -4.0243 -0.9601 13 6 -2.5223 -4.3859 -1.3578 14 6 -2.8196 -3.7937 -2.7112 15 1 -2.0720 -3.2008 -3.2174 16 6 -4.0461 -4.0086 -3.3035 17 7 -4.9562 -4.7309 -2.6874 18 14 -4.4143 -3.2751 -4.9816 19 1 -3.2330 -2.5119 -5.4582 20 1 -4.7190 -4.3656 -5.9424 21 1 -5.5834 -2.3654 -4.8783 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3633 -1.0277 -0.0023 24 1 -0.3633 0.5118 0.8912 25 1 1.2758 2.0561 0.4572 26 1 2.2122 1.6967 -1.0212 27 1 4.1470 1.6456 0.2024 28 1 3.2142 2.0442 1.6757 29 1 4.1138 -0.6534 0.6594 30 1 3.8132 -0.1172 2.3451 31 1 2.6816 -2.4509 0.2867 32 1 2.3394 -2.6115 2.0262 33 1 -0.0104 -2.3173 1.4799 34 1 1.2795 -4.3924 -0.1691 35 1 0.9375 -4.5537 1.5702 36 1 -0.8584 -5.6266 0.2991 37 1 -1.4944 -4.1591 1.0802 38 1 -2.6022 -5.4716 -1.4103 39 1 -3.2375 -4.0037 -0.6294 40 1 -5.8189 -4.8824 -3.1042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:13 Heat of formation + Delta-G solvation = -64.570083 kcal Electronic energy + Delta-G solvation = -17822.297650 eV Core-core repulsion = 15056.964945 eV Total energy + Delta-G solvation = -2765.332706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12683 -38.68870 -36.52610 -34.83991 -32.96709 -31.85477 -29.65816 -28.26082 -26.50584 -24.63535 -24.34655 -22.87046 -21.63191 -21.13323 -18.60651 -17.56550 -17.11189 -16.83606 -16.69307 -16.25282 -15.84875 -15.27670 -15.13423 -14.86429 -14.57884 -14.07212 -13.67579 -13.59833 -13.26608 -13.11169 -12.86416 -12.68571 -12.57785 -12.33371 -12.25585 -12.11604 -11.96677 -11.87284 -11.50825 -11.40709 -11.21174 -10.84307 -10.15632 -9.27651 -9.04025 -8.30226 -6.41317 1.40305 1.41564 1.56906 2.36766 3.03560 3.09479 3.22730 3.29721 3.81377 3.89036 4.11125 4.18287 4.28186 4.30693 4.40533 4.57074 4.59271 4.61075 4.64681 4.72161 4.75434 4.80800 4.86651 4.96388 5.03137 5.03933 5.08318 5.22077 5.23901 5.35097 5.50462 5.58591 6.00330 6.07147 6.22579 6.25725 6.50894 6.61263 6.90471 7.31070 8.82437 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.004910 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.748581 B = 5700.842650 C = 6542.164372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.026 3.974 4 C -0.124 4.124 5 C -0.112 4.112 6 C 0.063 3.937 7 H 0.050 0.950 8 C 0.080 3.920 9 N -0.688 5.688 10 C 0.076 3.924 11 C 0.055 3.945 12 O -0.395 6.395 13 C 0.209 3.791 14 C -0.542 4.542 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.981 3.019 19 H -0.267 1.267 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.022 0.978 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.337 0.663 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.039 0.961 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.903 9.142 11.114 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.102 4.102 4 C -0.162 4.162 5 C -0.150 4.150 6 C -0.045 4.045 7 H 0.068 0.932 8 C -0.049 4.049 9 N -0.320 5.320 10 C -0.053 4.053 11 C -0.022 4.022 12 O -0.314 6.314 13 C 0.134 3.866 14 C -0.580 4.580 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.804 3.196 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.065 0.935 23 H 0.110 0.890 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.000 1.000 39 H 0.001 0.999 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.071 9.006 9.840 20.885 hybrid contribution -1.195 0.081 0.957 1.533 sum 14.876 9.087 10.796 20.504 Atomic orbital electron populations 1.22687 0.87748 1.04159 0.98847 1.64555 1.08407 1.14545 1.37144 1.22973 0.96681 0.89857 1.00695 1.22372 0.96994 0.97134 0.99725 1.22512 0.94533 0.95582 1.02396 1.22905 0.96402 0.94199 0.91013 0.93174 1.21905 0.89931 0.93534 0.99573 1.60384 1.07726 1.10875 1.52984 1.21865 0.94557 0.88319 1.00548 1.22593 0.96421 0.97043 0.86143 1.87933 1.32792 1.75651 1.35037 1.19783 0.79427 0.93017 0.94409 1.21399 1.00194 1.33110 1.03261 0.92400 1.25919 0.95123 0.95357 1.02692 1.70076 1.06572 1.40013 1.40483 0.85174 0.78361 0.78357 0.77754 1.19087 1.19571 1.19577 0.93513 0.88966 0.95996 0.94159 0.91179 0.90122 0.90359 0.90746 0.89086 0.91485 0.93158 0.84447 0.91324 0.91414 0.93620 0.94304 0.99972 0.99862 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.44 9.04 127.69 1.15 1.59 16 2 N -0.52 -14.32 5.23 -883.92 -4.62 -18.95 16 3 C 0.03 0.57 6.70 86.45 0.58 1.15 16 4 C -0.12 -1.99 6.92 31.48 0.22 -1.77 16 5 C -0.11 -1.83 6.52 31.85 0.21 -1.62 16 6 C 0.06 1.38 2.71 45.32 0.12 1.51 16 7 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 8 C 0.08 1.83 5.49 86.30 0.47 2.30 16 9 N -0.69 -19.79 3.92 -513.89 -2.01 -21.80 16 10 C 0.08 2.21 6.07 86.30 0.52 2.74 16 11 C 0.06 2.07 6.22 71.98 0.45 2.52 16 12 O -0.39 -20.00 10.27 -148.98 -1.53 -21.53 16 13 C 0.21 12.12 5.69 71.23 0.41 12.53 16 14 C -0.54 -33.42 9.43 25.60 0.24 -33.18 16 15 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 16 C 0.01 0.43 5.46 84.66 0.46 0.89 16 17 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 18 Si 0.98 45.74 29.54 68.60 2.03 47.77 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.09 3.30 5.28 -2.39 -0.01 3.29 16 24 H 0.02 0.59 8.00 -2.39 -0.02 0.57 16 25 H 0.04 0.86 7.73 -2.39 -0.02 0.85 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.26 7.98 -2.39 -0.02 1.24 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.34 9.15 8.20 -89.70 -0.74 8.42 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -69.20 320.82 -0.77 -69.97 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.25 Total: 12.72 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.84 Total: -11.35 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -6.35 Total: -97.58 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.53 Total: -21.53 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.20 -0.77 -69.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.402 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds