Wall clock time and date at job start Mon Mar 30 2020 04:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48567 * 111.00064 * 2 1 4 4 C 1.54380 * 104.59380 * 200.95845 * 3 2 1 5 5 C 1.54261 * 105.06114 * 23.85167 * 4 3 2 6 6 C 1.48559 * 110.99992 * 244.57951 * 2 1 3 7 7 H 1.08998 * 110.51257 * 40.21291 * 6 2 1 8 8 C 1.53005 * 110.41062 * 277.81678 * 6 2 1 9 9 N 1.46899 * 109.46953 * 179.46085 * 8 6 2 10 10 C 1.46894 * 110.99921 * 174.80788 * 9 8 6 11 11 C 1.53004 * 109.47172 * 180.02562 * 10 9 8 12 12 O 1.42894 * 109.47143 * 64.99388 * 11 10 9 13 13 C 1.42905 * 113.99928 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47397 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00488 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46831 * 60.00249 * 18 16 14 20 20 H 1.48499 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46865 * 299.99942 * 18 16 14 22 22 H 1.09001 * 109.46911 * 180.49508 * 1 2 3 23 23 H 1.09005 * 109.46803 * 300.49467 * 1 2 3 24 24 H 1.08997 * 109.47102 * 60.48833 * 1 2 3 25 25 H 1.09002 * 110.41170 * 82.18123 * 3 2 1 26 26 H 1.08998 * 110.40937 * 319.73517 * 3 2 1 27 27 H 1.08993 * 110.32327 * 264.95625 * 4 3 2 28 28 H 1.09003 * 110.40739 * 142.78984 * 4 3 2 29 29 H 1.09000 * 110.32399 * 241.10284 * 5 4 3 30 30 H 1.09002 * 110.32254 * 118.89430 * 5 4 3 31 31 H 1.09003 * 109.46612 * 59.46107 * 8 6 2 32 32 H 1.08998 * 109.47227 * 299.46260 * 8 6 2 33 33 H 1.00906 * 111.00051 * 298.76054 * 9 8 6 34 34 H 1.09001 * 109.47178 * 299.99669 * 10 9 8 35 35 H 1.08997 * 109.47629 * 59.99934 * 10 9 8 36 36 H 1.08996 * 109.46861 * 184.99788 * 11 10 9 37 37 H 1.08998 * 109.46835 * 304.99444 * 11 10 9 38 38 H 1.08998 * 109.47086 * 300.00310 * 13 12 11 39 39 H 1.09003 * 109.46511 * 59.99892 * 13 12 11 40 40 H 0.96995 * 120.00492 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 2.0014 -0.5953 -1.2526 7 1 1.4105 -0.2730 -2.1100 8 6 2.0105 -2.1223 -1.1559 9 7 2.5279 -2.6892 -2.4084 10 6 2.6671 -4.1481 -2.3080 11 6 3.2078 -4.7009 -3.6283 12 8 4.5318 -4.2087 -3.8442 13 6 5.1317 -4.6673 -5.0574 14 6 6.5183 -4.0903 -5.1817 15 1 6.9031 -3.4389 -4.4110 16 6 7.2955 -4.3941 -6.2791 17 7 6.8268 -5.1870 -7.2179 18 14 9.0146 -3.6794 -6.4328 19 1 9.8381 -4.1180 -5.2775 20 1 9.6375 -4.1549 -7.6942 21 1 8.9346 -2.1966 -6.4491 22 1 -0.3633 -1.0276 0.0089 23 1 -0.3633 0.5215 0.8856 24 1 -0.3633 0.5062 -0.8943 25 1 2.0079 1.7917 1.0121 26 1 1.4099 2.0212 -0.6603 27 1 4.1483 1.1748 0.2934 28 1 3.6955 2.0993 -1.1696 29 1 4.1484 -0.7693 -0.9350 30 1 3.6937 0.1554 -2.3984 31 1 0.9955 -2.4816 -0.9863 32 1 2.6481 -2.4300 -0.3271 33 1 1.9421 -2.4348 -3.1896 34 1 3.3589 -4.3924 -1.5018 35 1 1.6941 -4.5925 -2.0989 36 1 3.2274 -5.7899 -3.5852 37 1 2.5632 -4.3812 -4.4471 38 1 5.1912 -5.7556 -5.0446 39 1 4.5269 -4.3465 -5.9056 40 1 7.3738 -5.4010 -7.9898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:15 Heat of formation + Delta-G solvation = -47.754899 kcal Electronic energy + Delta-G solvation = -17498.998383 eV Core-core repulsion = 14734.394838 eV Total energy + Delta-G solvation = -2764.603544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25151 -37.03711 -35.25461 -32.65346 -32.21279 -30.64853 -27.96036 -26.51836 -25.73530 -23.65112 -22.24744 -21.55040 -20.91170 -20.09730 -16.40096 -16.18798 -15.86339 -15.56389 -15.37105 -14.79084 -14.48799 -14.15510 -13.84055 -13.78240 -13.27654 -12.96471 -12.49846 -12.32698 -11.99489 -11.73056 -11.45981 -11.42305 -11.20790 -11.08298 -10.85009 -10.74605 -10.65548 -10.45799 -10.35740 -9.93315 -9.04083 -8.74441 -8.69358 -8.13708 -8.06663 -6.05017 -4.05940 3.36703 3.38726 3.43263 3.69987 4.40027 4.47595 4.68093 4.69127 4.91987 4.96704 5.06144 5.18908 5.26450 5.31370 5.37605 5.38067 5.53562 5.58575 5.63709 5.72370 5.74624 5.87444 5.95833 6.01687 6.07644 6.13533 6.17710 6.34514 6.41548 6.75285 6.86257 7.16255 7.24357 7.49912 7.59590 7.86802 8.23294 8.68487 9.08807 9.58770 11.06705 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004316 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.003265 B = 6486.046074 C = 7325.961751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.514 5.514 3 C 0.034 3.966 4 C -0.129 4.129 5 C -0.106 4.106 6 C 0.066 3.934 7 H 0.049 0.951 8 C 0.077 3.923 9 N -0.674 5.674 10 C 0.068 3.932 11 C 0.065 3.935 12 O -0.380 6.380 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.902 5.902 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.026 0.974 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.079 0.921 33 H 0.337 0.663 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.835 9.661 12.768 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.238 5.238 3 C -0.094 4.094 4 C -0.167 4.167 5 C -0.144 4.144 6 C -0.042 4.042 7 H 0.067 0.933 8 C -0.053 4.053 9 N -0.305 5.305 10 C -0.061 4.061 11 C -0.013 4.013 12 O -0.299 6.299 13 C 0.119 3.881 14 C -0.549 4.549 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.872 9.515 13.362 20.249 hybrid contribution -0.640 0.243 -1.217 1.397 sum -12.512 9.758 12.144 19.982 Atomic orbital electron populations 1.22512 0.88392 1.02106 1.00525 1.65224 1.07763 1.15279 1.35545 1.23093 0.95720 0.89753 1.00853 1.22355 0.95974 0.98435 0.99919 1.22194 0.95609 0.96016 1.00619 1.22624 0.96400 0.94895 0.90307 0.93289 1.21789 0.97410 0.92747 0.93368 1.60191 1.55286 1.10725 1.04347 1.21954 0.98312 0.87049 0.98816 1.22226 0.87495 0.96419 0.95150 1.87957 1.25636 1.72212 1.44108 1.20176 0.92979 0.93911 0.81006 1.21037 0.98342 1.29334 1.06157 0.91534 1.24944 0.98944 0.95319 0.95341 1.69957 1.37630 1.36233 1.10283 0.86406 0.83395 0.79464 0.77266 1.20026 1.21246 1.20012 0.91344 0.91462 0.95518 0.90332 0.94074 0.91135 0.91520 0.90242 0.90782 0.96112 0.90261 0.84576 0.90330 0.94997 0.94224 0.94872 0.98040 0.97937 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.41 60.07 0.57 0.69 16 2 N -0.51 -5.66 5.34 -230.33 -1.23 -6.89 16 3 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 4 C -0.13 -1.35 7.00 -25.35 -0.18 -1.52 16 5 C -0.11 -1.35 6.33 -25.34 -0.16 -1.51 16 6 C 0.07 0.79 2.53 -66.06 -0.17 0.63 16 7 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 8 C 0.08 0.97 5.24 -3.82 -0.02 0.95 16 9 N -0.67 -10.02 6.20 -113.78 -0.70 -10.72 16 10 C 0.07 1.03 6.06 -3.82 -0.02 1.01 16 11 C 0.07 1.23 6.22 37.16 0.23 1.46 16 12 O -0.38 -9.41 10.27 -35.23 -0.36 -9.77 16 13 C 0.19 5.45 5.69 36.01 0.20 5.65 16 14 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 15 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.07 0.60 7.51 -51.93 -0.39 0.21 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.03 0.23 7.97 -51.93 -0.41 -0.18 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.38 7.98 -51.93 -0.41 -0.03 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.14 7.81 -51.93 -0.41 0.73 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.24 7.49 -51.93 -0.39 -0.14 16 32 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 33 H 0.34 4.71 8.79 -39.29 -0.35 4.36 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -31.70 325.01 -9.05 -40.75 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.38 Total: -2.28 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.02 Total: -6.51 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -1.20 Total: -44.29 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.70 -9.05 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.006 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds