Wall clock time and date at job start Mon Mar 30 2020 04:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48567 * 111.00064 * 2 1 4 4 C 1.54380 * 104.59380 * 200.95845 * 3 2 1 5 5 C 1.54261 * 105.06114 * 23.85167 * 4 3 2 6 6 C 1.48559 * 110.99992 * 244.57951 * 2 1 3 7 7 H 1.08998 * 110.51257 * 40.21291 * 6 2 1 8 8 C 1.53005 * 110.41062 * 277.81678 * 6 2 1 9 9 N 1.46899 * 109.46953 * 179.46085 * 8 6 2 10 10 C 1.46894 * 110.99921 * 174.80788 * 9 8 6 11 11 C 1.53004 * 109.47172 * 180.02562 * 10 9 8 12 12 O 1.42894 * 109.47143 * 64.99388 * 11 10 9 13 13 C 1.42905 * 113.99928 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47397 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00488 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46831 * 60.00249 * 18 16 14 20 20 H 1.48499 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46865 * 299.99942 * 18 16 14 22 22 H 1.09001 * 109.46911 * 180.49508 * 1 2 3 23 23 H 1.09005 * 109.46803 * 300.49467 * 1 2 3 24 24 H 1.08997 * 109.47102 * 60.48833 * 1 2 3 25 25 H 1.09002 * 110.41170 * 82.18123 * 3 2 1 26 26 H 1.08998 * 110.40937 * 319.73517 * 3 2 1 27 27 H 1.08993 * 110.32327 * 264.95625 * 4 3 2 28 28 H 1.09003 * 110.40739 * 142.78984 * 4 3 2 29 29 H 1.09000 * 110.32399 * 241.10284 * 5 4 3 30 30 H 1.09002 * 110.32254 * 118.89430 * 5 4 3 31 31 H 1.09003 * 109.46612 * 59.46107 * 8 6 2 32 32 H 1.08998 * 109.47227 * 299.46260 * 8 6 2 33 33 H 1.00906 * 111.00051 * 298.76054 * 9 8 6 34 34 H 1.09001 * 109.47178 * 299.99669 * 10 9 8 35 35 H 1.08997 * 109.47629 * 59.99934 * 10 9 8 36 36 H 1.08996 * 109.46861 * 184.99788 * 11 10 9 37 37 H 1.08998 * 109.46835 * 304.99444 * 11 10 9 38 38 H 1.08998 * 109.47086 * 300.00310 * 13 12 11 39 39 H 1.09003 * 109.46511 * 59.99892 * 13 12 11 40 40 H 0.96995 * 120.00492 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 2.0014 -0.5953 -1.2526 7 1 1.4105 -0.2730 -2.1100 8 6 2.0105 -2.1223 -1.1559 9 7 2.5279 -2.6892 -2.4084 10 6 2.6671 -4.1481 -2.3080 11 6 3.2078 -4.7009 -3.6283 12 8 4.5318 -4.2087 -3.8442 13 6 5.1317 -4.6673 -5.0574 14 6 6.5183 -4.0903 -5.1817 15 1 6.9031 -3.4389 -4.4110 16 6 7.2955 -4.3941 -6.2791 17 7 6.8268 -5.1870 -7.2179 18 14 9.0146 -3.6794 -6.4328 19 1 9.8381 -4.1180 -5.2775 20 1 9.6375 -4.1549 -7.6942 21 1 8.9346 -2.1966 -6.4491 22 1 -0.3633 -1.0276 0.0089 23 1 -0.3633 0.5215 0.8856 24 1 -0.3633 0.5062 -0.8943 25 1 2.0079 1.7917 1.0121 26 1 1.4099 2.0212 -0.6603 27 1 4.1483 1.1748 0.2934 28 1 3.6955 2.0993 -1.1696 29 1 4.1484 -0.7693 -0.9350 30 1 3.6937 0.1554 -2.3984 31 1 0.9955 -2.4816 -0.9863 32 1 2.6481 -2.4300 -0.3271 33 1 1.9421 -2.4348 -3.1896 34 1 3.3589 -4.3924 -1.5018 35 1 1.6941 -4.5925 -2.0989 36 1 3.2274 -5.7899 -3.5852 37 1 2.5632 -4.3812 -4.4471 38 1 5.1912 -5.7556 -5.0446 39 1 4.5269 -4.3465 -5.9056 40 1 7.3738 -5.4010 -7.9898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:15 Heat of formation + Delta-G solvation = -71.433126 kcal Electronic energy + Delta-G solvation = -17500.025148 eV Core-core repulsion = 14734.394838 eV Total energy + Delta-G solvation = -2765.630309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15081 -38.73536 -36.63230 -34.85432 -33.05747 -31.87790 -29.62926 -28.22952 -26.54594 -24.75962 -24.41176 -22.88898 -21.77798 -21.07853 -18.61267 -17.58189 -17.05460 -16.84490 -16.68138 -16.32153 -15.86149 -15.60479 -15.12247 -14.66029 -14.62262 -14.39131 -13.89808 -13.54381 -13.23965 -13.09601 -12.85796 -12.79749 -12.64825 -12.32650 -12.27054 -12.16633 -12.05202 -11.74854 -11.66459 -11.35609 -11.25207 -10.84193 -10.17343 -9.52172 -9.23043 -8.30324 -6.42302 1.40571 1.45690 1.54002 2.36534 2.78838 3.03292 3.24596 3.51647 3.73204 3.81798 4.04677 4.18040 4.26021 4.28726 4.35243 4.50437 4.54184 4.55526 4.58336 4.68589 4.73328 4.79857 4.84878 4.95191 5.00287 5.00887 5.05440 5.12338 5.20908 5.27446 5.36246 5.57132 5.88475 5.98952 6.02534 6.15603 6.47131 6.59630 6.88332 7.30037 8.81924 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004316 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.003265 B = 6486.046074 C = 7325.961751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.036 3.964 4 C -0.126 4.126 5 C -0.109 4.109 6 C 0.070 3.930 7 H 0.049 0.951 8 C 0.085 3.915 9 N -0.694 5.694 10 C 0.078 3.922 11 C 0.055 3.945 12 O -0.396 6.396 13 C 0.209 3.791 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.266 1.266 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.341 0.659 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.040 0.960 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.103 10.673 13.534 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.092 4.092 4 C -0.164 4.164 5 C -0.148 4.148 6 C -0.038 4.038 7 H 0.067 0.933 8 C -0.044 4.044 9 N -0.326 5.326 10 C -0.051 4.051 11 C -0.022 4.022 12 O -0.316 6.316 13 C 0.133 3.867 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.192 4.192 17 N -0.572 5.572 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.190 1.190 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.048 0.952 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.170 10.528 14.145 21.425 hybrid contribution -0.649 -0.099 -1.434 1.577 sum -12.819 10.429 12.712 20.849 Atomic orbital electron populations 1.22564 0.87058 1.02542 1.01371 1.65221 1.09107 1.16003 1.34642 1.23136 0.94960 0.89315 1.01788 1.22347 0.96875 0.97396 0.99761 1.22142 0.95818 0.96900 0.99899 1.22524 0.95831 0.94438 0.91038 0.93253 1.21701 0.97728 0.93172 0.91829 1.60133 1.56333 1.10610 1.05559 1.21842 0.99523 0.87575 0.96124 1.22591 0.84901 0.97222 0.97497 1.87914 1.28664 1.72640 1.42371 1.19795 0.92589 0.92522 0.81762 1.21364 0.99760 1.30396 1.06926 0.92200 1.25950 1.03574 0.95203 0.94433 1.70062 1.39518 1.36819 1.10754 0.85252 0.77439 0.78926 0.77906 1.19018 1.19885 1.19050 0.91175 0.90070 0.95163 0.88980 0.93265 0.90972 0.90568 0.92488 0.92325 0.94532 0.91457 0.84069 0.91143 0.91446 0.93390 0.94180 0.99887 0.99865 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.41 127.69 1.20 1.41 16 2 N -0.53 -10.65 5.34 -882.64 -4.71 -15.36 16 3 C 0.04 0.63 6.49 86.45 0.56 1.19 16 4 C -0.13 -2.51 7.00 31.49 0.22 -2.29 16 5 C -0.11 -2.80 6.33 31.49 0.20 -2.60 16 6 C 0.07 1.63 2.53 45.07 0.11 1.74 16 7 H 0.05 1.14 7.90 -2.39 -0.02 1.12 16 8 C 0.09 2.07 5.24 86.30 0.45 2.53 16 9 N -0.69 -20.25 6.20 -513.89 -3.18 -23.43 16 10 C 0.08 2.31 6.06 86.31 0.52 2.83 16 11 C 0.06 2.07 6.22 71.98 0.45 2.52 16 12 O -0.40 -20.07 10.27 -148.98 -1.53 -21.60 16 13 C 0.21 12.09 5.69 71.24 0.41 12.50 16 14 C -0.55 -33.58 9.43 25.60 0.24 -33.34 16 15 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 16 C 0.01 0.39 5.46 84.65 0.46 0.85 16 17 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 18 Si 0.98 45.28 29.54 68.60 2.03 47.31 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H 0.07 1.07 7.51 -2.39 -0.02 1.06 16 23 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.03 0.46 7.97 -2.39 -0.02 0.44 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 0.79 7.98 -2.39 -0.02 0.78 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.69 7.81 -2.39 -0.02 1.67 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 0.78 7.49 -2.39 -0.02 0.77 16 32 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 33 H 0.34 9.31 8.79 -89.69 -0.79 8.53 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.00 325.01 -2.09 -70.10 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.20 Total: 12.42 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.83 Total: -12.66 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -7.61 Total: -95.57 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.53 Total: -21.60 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.00 -2.09 -70.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.337 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds