Wall clock time and date at job start Mon Mar 30 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99973 * 2 1 4 4 C 1.52998 * 109.47464 * 199.94015 * 3 2 1 5 5 O 1.42891 * 109.47352 * 65.07381 * 4 3 2 6 6 C 1.42902 * 114.00204 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47024 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99884 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99696 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00088 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00003 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47501 * 269.99737 * 11 9 7 13 13 H 1.48496 * 109.47371 * 30.00094 * 11 9 7 14 14 H 1.48511 * 109.47047 * 149.99987 * 11 9 7 15 15 C 1.46903 * 111.00353 * 123.95396 * 2 1 3 16 16 C 1.53002 * 109.47086 * 66.04705 * 15 2 1 17 17 H 1.08995 * 110.36385 * 297.35335 * 16 15 2 18 18 C 1.54372 * 110.41116 * 175.00255 * 16 15 2 19 19 C 1.54264 * 105.06120 * 217.37031 * 18 16 15 20 20 C 1.54383 * 105.05921 * 359.97438 * 19 18 16 21 21 N 1.48564 * 110.40735 * 59.82762 * 16 15 2 22 22 H 1.09001 * 109.47390 * 54.71935 * 1 2 3 23 23 H 1.09009 * 109.46724 * 174.71704 * 1 2 3 24 24 H 1.09001 * 109.47478 * 294.71293 * 1 2 3 25 25 H 1.09007 * 109.46920 * 79.93477 * 3 2 1 26 26 H 1.09002 * 109.46971 * 319.94350 * 3 2 1 27 27 H 1.09007 * 109.46554 * 305.07785 * 4 3 2 28 28 H 1.08997 * 109.47338 * 185.07905 * 4 3 2 29 29 H 1.09002 * 109.46789 * 60.00464 * 6 5 4 30 30 H 1.08998 * 109.47253 * 300.00170 * 6 5 4 31 31 H 0.96998 * 120.00112 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.46982 * 186.04656 * 15 2 1 33 33 H 1.08999 * 109.46952 * 306.05067 * 15 2 1 34 34 H 1.09000 * 110.32372 * 336.26298 * 18 16 15 35 35 H 1.08999 * 110.32749 * 98.37366 * 18 16 15 36 36 H 1.09000 * 110.32480 * 118.89301 * 19 18 16 37 37 H 1.08998 * 110.32612 * 241.00263 * 19 18 16 38 38 H 1.09000 * 110.41130 * 142.62620 * 20 19 18 39 39 H 1.08992 * 110.41278 * 264.95954 * 20 19 18 40 40 H 1.00902 * 110.99896 * 277.81769 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4441 1.3617 -0.4919 5 8 3.4805 0.9445 -1.8581 6 6 4.7947 0.9002 -2.4175 7 6 4.7144 0.4507 -3.8538 8 1 3.7556 0.2222 -4.2952 9 6 5.8648 0.3323 -4.6043 10 7 5.7947 -0.0595 -5.8578 11 14 7.5229 0.7296 -3.8413 12 1 7.8319 2.1672 -4.0493 13 1 7.4807 0.4380 -2.3859 14 1 8.5745 -0.1004 -4.4822 15 6 1.9955 -0.7660 1.1376 16 6 1.6315 -2.2426 0.9703 17 1 0.5490 -2.3696 0.9775 18 6 2.2802 -3.0869 2.0882 19 6 2.6949 -4.4062 1.4046 20 6 2.2614 -4.2482 -0.0686 21 7 2.2104 -2.7795 -0.2882 22 1 -0.3634 0.5936 -0.8389 23 1 -0.3633 -1.0234 -0.0946 24 1 -0.3634 0.4296 0.9335 25 1 1.9579 1.7750 1.0119 26 1 1.3912 1.9925 -0.6614 27 1 4.0291 0.6704 0.1148 28 1 3.8635 2.3642 -0.4069 29 1 5.4074 0.1991 -1.8508 30 1 5.2425 1.8929 -2.3724 31 1 6.6041 -0.1432 -6.3857 32 1 3.0798 -0.6610 1.1755 33 1 1.5611 -0.3873 2.0628 34 1 3.1560 -2.5763 2.4884 35 1 1.5596 -3.2807 2.8828 36 1 3.7743 -4.5431 1.4694 37 1 2.1788 -5.2492 1.8640 38 1 2.9952 -4.7060 -0.7320 39 1 1.2787 -4.6928 -0.2255 40 1 1.6276 -2.5524 -1.0800 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395341712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:08 Heat of formation + Delta-G solvation = -36.908873 kcal Electronic energy + Delta-G solvation = -18137.652766 eV Core-core repulsion = 15373.519541 eV Total energy + Delta-G solvation = -2764.133225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.94989 -37.25999 -35.85527 -32.52025 -30.55900 -30.11313 -29.29058 -27.41572 -25.89962 -23.53054 -21.68768 -21.33124 -20.45496 -19.86517 -16.82048 -16.69178 -15.88234 -15.59236 -15.11754 -14.84379 -14.53158 -14.07426 -13.71655 -13.60595 -12.86334 -12.65301 -12.40005 -12.12647 -11.94599 -11.79501 -11.70730 -11.52852 -11.43915 -11.15444 -10.86008 -10.78791 -10.54313 -10.45347 -10.25782 -9.74473 -9.02042 -8.67785 -8.29871 -8.25968 -7.98765 -5.99596 -3.96477 3.32820 3.39398 3.42825 4.00980 4.37743 4.46538 4.74970 4.78873 4.81233 5.04114 5.13919 5.30890 5.32406 5.34353 5.40132 5.52214 5.60918 5.62737 5.72231 5.78567 5.80422 5.91091 5.94263 5.98929 6.01425 6.05989 6.14289 6.22021 6.31077 6.76906 6.98013 7.17771 7.28438 7.33020 7.64740 7.75052 8.21752 8.84416 9.14347 9.61270 11.13816 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.006154 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.972810 B = 4548.560551 C = 5226.312802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.521 5.521 3 C 0.062 3.938 4 C 0.067 3.933 5 O -0.361 6.361 6 C 0.169 3.831 7 C -0.508 4.508 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.266 1.266 14 H -0.284 1.284 15 C 0.069 3.931 16 C 0.072 3.928 17 H 0.042 0.958 18 C -0.120 4.120 19 C -0.123 4.123 20 C 0.032 3.968 21 N -0.639 5.639 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.017 0.983 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.002 0.998 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 -3.916 17.593 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.066 4.066 4 C -0.012 4.012 5 O -0.280 6.280 6 C 0.094 3.906 7 C -0.546 4.546 8 H 0.100 0.900 9 C -0.131 4.131 10 N -0.539 5.539 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.191 1.191 14 H -0.209 1.209 15 C -0.059 4.059 16 C -0.039 4.039 17 H 0.060 0.940 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.097 4.097 21 N -0.269 5.269 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.019 0.981 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.210 -4.063 16.997 19.308 hybrid contribution -0.040 0.376 1.109 1.172 sum -8.250 -3.687 18.106 20.236 Atomic orbital electron populations 1.22415 0.88238 1.01731 0.99901 1.61784 1.06506 1.13554 1.42624 1.22118 0.96594 0.89268 0.98588 1.22269 0.94928 0.97138 0.86827 1.87988 1.29953 1.88069 1.21981 1.20543 0.81073 0.94068 0.94928 1.20897 0.95947 1.44583 0.93190 0.89993 1.24753 0.98635 0.94977 0.94694 1.69880 1.28680 1.47714 1.07582 0.86872 0.84271 0.78660 0.80065 1.20140 1.19101 1.20937 1.22179 1.01165 0.92190 0.90380 1.22426 0.96060 0.94193 0.91218 0.93989 1.22312 1.00582 0.95930 0.97067 1.22262 1.01715 0.96897 0.95219 1.22924 0.99540 0.90665 0.96621 1.63551 1.52832 1.06524 1.04023 0.91244 0.91981 0.96500 0.94347 0.90239 0.94449 0.94648 0.98066 0.99058 0.92581 0.89893 0.95411 0.91046 0.91880 0.91106 0.91913 0.90150 0.94959 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.27 60.06 0.56 0.87 16 2 N -0.52 -7.76 4.50 -242.91 -1.09 -8.85 16 3 C 0.06 0.93 5.39 -3.82 -0.02 0.91 16 4 C 0.07 1.23 6.13 37.16 0.23 1.46 16 5 O -0.36 -8.81 10.27 -35.23 -0.36 -9.17 16 6 C 0.17 4.52 4.76 36.01 0.17 4.69 16 7 C -0.51 -15.65 9.99 -34.44 -0.34 -16.00 16 8 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.51 13.96 55.43 0.77 -27.73 16 11 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.07 0.92 4.41 -3.82 -0.02 0.90 16 16 C 0.07 0.89 2.94 -66.07 -0.19 0.70 16 17 H 0.04 0.49 6.77 -51.93 -0.35 0.14 16 18 C -0.12 -1.28 6.55 -25.35 -0.17 -1.45 16 19 C -0.12 -1.31 7.00 -25.34 -0.18 -1.49 16 20 C 0.03 0.40 7.47 -2.16 -0.02 0.38 16 21 N -0.64 -9.54 7.15 -102.73 -0.73 -10.28 16 22 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 23 H 0.06 0.71 6.61 -51.92 -0.34 0.36 16 24 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 25 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 26 H 0.08 1.19 7.80 -51.93 -0.41 0.79 16 27 H 0.04 0.69 6.67 -51.93 -0.35 0.34 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 30 H -0.01 -0.21 7.57 -51.93 -0.39 -0.60 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 33 H 0.03 0.32 8.11 -51.93 -0.42 -0.10 16 34 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.35 5.49 8.92 -39.29 -0.35 5.14 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -33.04 316.76 -8.50 -41.53 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.11 Total: -0.81 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.08 Total: -6.99 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -1.06 Total: -46.86 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.36 Total: -9.17 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.04 -8.50 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395341712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.623 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds