Wall clock time and date at job start Mon Mar 30 2020 04:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99973 * 2 1 4 4 C 1.52998 * 109.47464 * 199.94015 * 3 2 1 5 5 O 1.42891 * 109.47352 * 65.07381 * 4 3 2 6 6 C 1.42902 * 114.00204 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47024 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99884 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99696 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00088 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00003 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47501 * 269.99737 * 11 9 7 13 13 H 1.48496 * 109.47371 * 30.00094 * 11 9 7 14 14 H 1.48511 * 109.47047 * 149.99987 * 11 9 7 15 15 C 1.46903 * 111.00353 * 123.95396 * 2 1 3 16 16 C 1.53002 * 109.47086 * 66.04705 * 15 2 1 17 17 H 1.08995 * 110.36385 * 297.35335 * 16 15 2 18 18 C 1.54372 * 110.41116 * 175.00255 * 16 15 2 19 19 C 1.54264 * 105.06120 * 217.37031 * 18 16 15 20 20 C 1.54383 * 105.05921 * 359.97438 * 19 18 16 21 21 N 1.48564 * 110.40735 * 59.82762 * 16 15 2 22 22 H 1.09001 * 109.47390 * 54.71935 * 1 2 3 23 23 H 1.09009 * 109.46724 * 174.71704 * 1 2 3 24 24 H 1.09001 * 109.47478 * 294.71293 * 1 2 3 25 25 H 1.09007 * 109.46920 * 79.93477 * 3 2 1 26 26 H 1.09002 * 109.46971 * 319.94350 * 3 2 1 27 27 H 1.09007 * 109.46554 * 305.07785 * 4 3 2 28 28 H 1.08997 * 109.47338 * 185.07905 * 4 3 2 29 29 H 1.09002 * 109.46789 * 60.00464 * 6 5 4 30 30 H 1.08998 * 109.47253 * 300.00170 * 6 5 4 31 31 H 0.96998 * 120.00112 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.46982 * 186.04656 * 15 2 1 33 33 H 1.08999 * 109.46952 * 306.05067 * 15 2 1 34 34 H 1.09000 * 110.32372 * 336.26298 * 18 16 15 35 35 H 1.08999 * 110.32749 * 98.37366 * 18 16 15 36 36 H 1.09000 * 110.32480 * 118.89301 * 19 18 16 37 37 H 1.08998 * 110.32612 * 241.00263 * 19 18 16 38 38 H 1.09000 * 110.41130 * 142.62620 * 20 19 18 39 39 H 1.08992 * 110.41278 * 264.95954 * 20 19 18 40 40 H 1.00902 * 110.99896 * 277.81769 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4441 1.3617 -0.4919 5 8 3.4805 0.9445 -1.8581 6 6 4.7947 0.9002 -2.4175 7 6 4.7144 0.4507 -3.8538 8 1 3.7556 0.2222 -4.2952 9 6 5.8648 0.3323 -4.6043 10 7 5.7947 -0.0595 -5.8578 11 14 7.5229 0.7296 -3.8413 12 1 7.8319 2.1672 -4.0493 13 1 7.4807 0.4380 -2.3859 14 1 8.5745 -0.1004 -4.4822 15 6 1.9955 -0.7660 1.1376 16 6 1.6315 -2.2426 0.9703 17 1 0.5490 -2.3696 0.9775 18 6 2.2802 -3.0869 2.0882 19 6 2.6949 -4.4062 1.4046 20 6 2.2614 -4.2482 -0.0686 21 7 2.2104 -2.7795 -0.2882 22 1 -0.3634 0.5936 -0.8389 23 1 -0.3633 -1.0234 -0.0946 24 1 -0.3634 0.4296 0.9335 25 1 1.9579 1.7750 1.0119 26 1 1.3912 1.9925 -0.6614 27 1 4.0291 0.6704 0.1148 28 1 3.8635 2.3642 -0.4069 29 1 5.4074 0.1991 -1.8508 30 1 5.2425 1.8929 -2.3724 31 1 6.6041 -0.1432 -6.3857 32 1 3.0798 -0.6610 1.1755 33 1 1.5611 -0.3873 2.0628 34 1 3.1560 -2.5763 2.4884 35 1 1.5596 -3.2807 2.8828 36 1 3.7743 -4.5431 1.4694 37 1 2.1788 -5.2492 1.8640 38 1 2.9952 -4.7060 -0.7320 39 1 1.2787 -4.6928 -0.2255 40 1 1.6276 -2.5524 -1.0800 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395341712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:07 Heat of formation + Delta-G solvation = -62.869833 kcal Electronic energy + Delta-G solvation = -18138.778518 eV Core-core repulsion = 15373.519541 eV Total energy + Delta-G solvation = -2765.258977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98121 -38.70619 -37.27368 -34.80620 -31.80998 -31.07245 -30.62992 -29.32078 -26.92911 -24.73502 -23.87855 -22.45383 -21.44489 -20.86804 -18.99686 -17.78014 -17.41681 -16.93443 -16.53419 -16.32028 -15.79416 -15.65090 -15.07858 -14.72608 -14.66738 -13.92791 -13.74760 -13.54874 -13.25036 -12.92739 -12.82559 -12.77780 -12.64409 -12.53291 -12.43521 -12.09090 -11.89839 -11.77550 -11.62289 -11.32990 -11.22863 -10.87820 -10.21018 -9.33656 -9.02503 -8.33454 -6.39523 1.33041 1.36796 1.47964 2.31953 2.96594 2.99067 3.22669 3.40270 3.81756 3.88465 4.12494 4.17950 4.25472 4.27235 4.44976 4.47556 4.54649 4.55576 4.66007 4.67587 4.69829 4.77557 4.80345 4.95518 4.98502 5.03184 5.03896 5.06356 5.09835 5.23860 5.30049 5.49987 5.98565 6.02939 6.22275 6.32301 6.49776 6.64054 6.88359 7.24914 8.83967 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.006154 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.972810 B = 4548.560551 C = 5226.312802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.551 5.551 3 C 0.068 3.932 4 C 0.058 3.942 5 O -0.388 6.388 6 C 0.183 3.817 7 C -0.536 4.536 8 H 0.029 0.971 9 C 0.012 3.988 10 N -0.944 5.944 11 Si 0.954 3.046 12 H -0.257 1.257 13 H -0.251 1.251 14 H -0.273 1.273 15 C 0.073 3.927 16 C 0.072 3.928 17 H 0.053 0.947 18 C -0.117 4.117 19 C -0.119 4.119 20 C 0.029 3.971 21 N -0.670 5.670 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.002 0.998 30 H 0.006 0.994 31 H 0.272 0.728 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 -3.492 20.335 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.276 5.276 3 C -0.060 4.060 4 C -0.019 4.019 5 O -0.307 6.307 6 C 0.107 3.893 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.775 3.225 12 H -0.182 1.182 13 H -0.174 1.174 14 H -0.198 1.198 15 C -0.055 4.055 16 C -0.038 4.038 17 H 0.070 0.930 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.100 4.100 21 N -0.299 5.299 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.693 -3.639 19.764 21.518 hybrid contribution -0.324 0.214 0.210 0.441 sum -8.017 -3.425 19.974 21.793 Atomic orbital electron populations 1.22376 0.86646 1.02113 1.00636 1.61705 1.08159 1.13622 1.44082 1.22058 0.94134 0.89781 1.00026 1.22631 0.97805 0.97776 0.83719 1.87946 1.28650 1.88666 1.25405 1.20212 0.82394 0.94287 0.92420 1.21134 0.94325 1.46023 0.95866 0.95300 1.25806 1.03554 0.94105 0.95044 1.70035 1.30545 1.48379 1.09399 0.85631 0.77701 0.79415 0.79713 1.18192 1.17432 1.19784 1.22155 0.99920 0.92613 0.90837 1.22502 0.96686 0.93966 0.90689 0.92951 1.22327 1.00956 0.95277 0.96952 1.22265 1.01612 0.97934 0.93941 1.22969 0.99908 0.89419 0.97749 1.63564 1.53342 1.08231 1.04802 0.92032 0.91539 0.94375 0.90978 0.90656 0.94368 0.92954 0.98077 0.97645 0.91934 0.92002 0.93048 0.91398 0.89406 0.91745 0.89588 0.91609 0.93683 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.27 127.69 1.18 1.87 16 2 N -0.55 -15.81 4.50 -922.42 -4.16 -19.96 16 3 C 0.07 1.92 5.39 86.30 0.46 2.39 16 4 C 0.06 2.08 6.13 71.98 0.44 2.52 16 5 O -0.39 -19.12 10.27 -148.98 -1.53 -20.65 16 6 C 0.18 9.77 4.76 71.24 0.34 10.10 16 7 C -0.54 -34.15 9.99 25.60 0.26 -33.89 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 9 C 0.01 0.76 5.47 84.65 0.46 1.22 16 10 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 11 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 13 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.07 1.81 4.41 86.30 0.38 2.19 16 16 C 0.07 1.68 2.94 45.06 0.13 1.82 16 17 H 0.05 1.12 6.77 -2.39 -0.02 1.10 16 18 C -0.12 -2.22 6.55 31.49 0.21 -2.01 16 19 C -0.12 -2.35 7.00 31.49 0.22 -2.13 16 20 C 0.03 0.71 7.47 86.45 0.65 1.35 16 21 N -0.67 -20.15 7.15 -478.92 -3.42 -23.57 16 22 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 23 H 0.07 1.43 6.61 -2.38 -0.02 1.41 16 24 H 0.04 0.70 8.13 -2.39 -0.02 0.68 16 25 H 0.07 1.57 8.00 -2.38 -0.02 1.55 16 26 H 0.07 2.18 7.80 -2.39 -0.02 2.16 16 27 H 0.04 1.36 6.67 -2.38 -0.02 1.35 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.00 0.08 7.20 -2.39 -0.02 0.06 16 30 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 31 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 32 H 0.06 1.79 6.52 -2.39 -0.02 1.77 16 33 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 34 H 0.07 1.34 7.82 -2.39 -0.02 1.32 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.34 11.00 8.92 -89.69 -0.80 10.20 16 Total: -1.00 -73.50 316.76 -2.05 -75.55 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.14 Total: 16.90 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.73 Total: -14.56 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -7.28 Total: -104.47 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.53 Total: -20.65 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -73.50 -2.05 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395341712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.680 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds