Wall clock time and date at job start Mon Mar 30 2020 04:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 N 1.46903 * 109.51984 * 182.43787 * 5 4 3 7 7 C 1.46900 * 111.00105 * 274.68091 * 6 5 4 8 8 C 1.52995 * 109.47252 * 180.02562 * 7 6 5 9 9 O 1.42904 * 109.46960 * 65.00133 * 8 7 6 10 10 C 1.42902 * 113.99921 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46910 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00253 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00010 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00080 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00143 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47378 * 89.99950 * 15 13 11 17 17 H 1.48494 * 109.47228 * 209.99856 * 15 13 11 18 18 H 1.48496 * 109.47270 * 329.99989 * 15 13 11 19 19 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 20 20 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 21 21 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 22 22 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 23 23 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 24 24 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 25 25 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 26 26 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 27 27 H 1.08999 * 109.53552 * 179.14132 * 4 3 2 28 28 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 29 29 H 1.00897 * 110.99933 * 38.63677 * 6 5 4 30 30 H 1.08997 * 109.46996 * 300.00725 * 7 6 5 31 31 H 1.09002 * 109.46765 * 60.00387 * 7 6 5 32 32 H 1.08997 * 109.47209 * 185.00049 * 8 7 6 33 33 H 1.09002 * 109.47100 * 305.00350 * 8 7 6 34 34 H 1.08992 * 109.46861 * 299.99945 * 10 9 8 35 35 H 1.09000 * 109.47276 * 60.00418 * 10 9 8 36 36 H 0.96998 * 120.00075 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.50416 * 297.70785 * 19 5 4 38 38 H 1.09001 * 109.50010 * 177.59436 * 19 5 4 39 39 H 1.09007 * 109.46691 * 305.86028 * 20 2 1 40 40 H 1.09003 * 109.46730 * 65.82297 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 7 5.5757 0.4485 -0.8474 7 6 6.2425 1.6315 -1.4076 8 6 7.7550 1.5030 -1.2159 9 8 8.2399 0.3979 -1.9812 10 6 9.6493 0.1888 -1.8713 11 6 10.0487 -0.9945 -2.7148 12 1 9.3012 -1.5327 -3.2786 13 6 11.3685 -1.3901 -2.7666 14 7 12.2789 -0.7345 -2.0804 15 14 11.8637 -2.8564 -3.8126 16 1 12.2070 -2.3945 -5.1816 17 1 13.0435 -3.5223 -3.2045 18 1 10.7343 -3.8180 -3.8833 19 6 3.5181 -0.8716 -1.0209 20 6 1.9952 -0.7707 -1.1337 21 1 -0.3634 -1.0249 0.0754 22 1 -0.3633 0.4472 -0.9253 23 1 -0.3633 0.5778 0.8499 24 1 1.7325 1.8608 -0.9375 25 1 1.5635 1.9256 0.8331 26 1 3.7815 0.8566 1.0906 27 1 3.9106 2.3509 0.1315 28 1 3.8888 1.0354 -1.9560 29 1 5.8213 0.3204 0.1227 30 1 6.0164 1.7065 -2.4712 31 1 5.8858 2.5257 -0.8964 32 1 8.2427 2.4186 -1.5505 33 1 7.9748 1.3388 -0.1610 34 1 10.1765 1.0770 -2.2192 35 1 9.9081 -0.0030 -0.8300 36 1 13.2074 -1.0125 -2.1171 37 1 3.7813 -1.3838 -0.0955 38 1 3.9098 -1.4303 -1.8709 39 1 1.5633 -1.7715 -1.1244 40 1 1.7324 -0.2708 -2.0661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395374391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:06 Heat of formation + Delta-G solvation = -52.186411 kcal Electronic energy + Delta-G solvation = -17490.557212 eV Core-core repulsion = 14725.761503 eV Total energy + Delta-G solvation = -2764.795709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35327 -37.01222 -35.56236 -32.76786 -31.86718 -30.96648 -28.46074 -26.74514 -25.41045 -23.27583 -22.34612 -22.15539 -21.45528 -19.86646 -16.46375 -16.17271 -15.75291 -15.30944 -15.26566 -14.97354 -14.51830 -14.15092 -14.03121 -13.99183 -13.03561 -12.91569 -12.63405 -12.56681 -12.35427 -11.85601 -11.77483 -11.34275 -11.24724 -11.10533 -10.79129 -10.76444 -10.65547 -10.59441 -10.26584 -9.90622 -9.02659 -8.74583 -8.56618 -8.10865 -8.05260 -6.04843 -4.05618 3.34810 3.39451 3.45839 3.71457 4.25060 4.40921 4.67237 4.73468 4.89357 4.92889 5.04540 5.15091 5.20362 5.31628 5.31809 5.41612 5.49434 5.57816 5.58387 5.59899 5.63484 5.71191 5.87242 5.92886 6.06201 6.12674 6.19425 6.32488 6.37037 6.83384 6.87296 7.16889 7.28268 7.50341 7.63380 7.87320 8.23573 8.68713 9.09392 9.59075 11.06934 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041020 B = 0.003766 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.421790 B = 7433.640668 C = 7968.454729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.061 3.939 4 C -0.148 4.148 5 C 0.088 3.912 6 N -0.670 5.670 7 C 0.066 3.934 8 C 0.065 3.935 9 O -0.380 6.380 10 C 0.193 3.807 11 C -0.510 4.510 12 H 0.067 0.933 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.908 3.092 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.105 4.105 20 C 0.056 3.944 21 H 0.068 0.932 22 H 0.023 0.977 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.340 0.660 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.034 0.966 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 4.756 4.626 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.068 4.068 4 C -0.187 4.187 5 C -0.023 4.023 6 N -0.300 5.300 7 C -0.064 4.064 8 C -0.013 4.013 9 O -0.300 6.300 10 C 0.119 3.881 11 C -0.548 4.548 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.143 4.143 20 C -0.072 4.072 21 H 0.087 0.913 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.913 4.026 4.399 21.747 hybrid contribution 0.095 0.641 -0.331 0.728 sum -20.818 4.667 4.068 21.719 Atomic orbital electron populations 1.22346 0.87510 1.02210 1.00259 1.61938 1.07337 1.13761 1.43892 1.22008 0.95485 0.89094 1.00190 1.22380 0.94906 1.00764 1.00694 1.21622 0.87765 0.95707 0.97183 1.60408 1.05563 1.40422 1.23586 1.21998 0.93614 0.90284 1.00456 1.22231 0.92703 0.91154 0.95248 1.87958 1.26376 1.47572 1.68059 1.20181 0.75548 0.96166 0.96205 1.21077 0.93170 1.12925 1.27630 0.91498 1.24953 0.96082 0.97498 0.96101 1.69968 1.01767 1.40672 1.41667 0.86339 0.78035 0.82121 0.80021 1.20543 1.21152 1.19578 1.21562 0.92405 0.96834 1.03515 1.22144 0.96142 0.98034 0.90920 0.91333 0.95846 0.91545 0.95041 0.91021 0.90818 0.91761 0.91063 0.84103 0.90574 0.94979 0.94292 0.94803 0.98050 0.97888 0.92761 0.90965 0.90394 0.90618 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.59 60.07 0.58 0.77 16 2 N -0.54 -5.43 4.91 -242.96 -1.19 -6.62 16 3 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 4 C -0.15 -1.52 5.35 -26.65 -0.14 -1.66 16 5 C 0.09 1.07 2.53 -67.59 -0.17 0.90 16 6 N -0.67 -10.02 6.20 -106.59 -0.66 -10.68 16 7 C 0.07 1.00 5.87 -3.83 -0.02 0.97 16 8 C 0.06 1.23 6.22 37.16 0.23 1.46 16 9 O -0.38 -9.50 10.27 -35.23 -0.36 -9.86 16 10 C 0.19 5.47 5.69 36.01 0.20 5.67 16 11 C -0.51 -15.44 9.43 -34.44 -0.32 -15.77 16 12 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 15 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.10 -1.25 5.70 -26.65 -0.15 -1.40 16 20 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 24 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 26 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 28 H 0.07 0.89 7.80 -51.93 -0.41 0.49 16 29 H 0.34 4.87 8.45 -39.29 -0.33 4.54 16 30 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 31 H 0.03 0.40 7.51 -51.93 -0.39 0.01 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -32.04 321.60 -8.99 -41.03 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.39 Total: -2.78 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 0.06 Total: -6.45 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -1.12 Total: -44.08 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.36 Total: -9.86 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.04 -8.99 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395374391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.158 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds