Wall clock time and date at job start Mon Mar 30 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 N 1.46903 * 109.51984 * 182.43787 * 5 4 3 7 7 C 1.46900 * 111.00105 * 274.68091 * 6 5 4 8 8 C 1.52995 * 109.47252 * 180.02562 * 7 6 5 9 9 O 1.42904 * 109.46960 * 65.00133 * 8 7 6 10 10 C 1.42902 * 113.99921 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46910 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00253 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00010 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00080 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00143 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47378 * 89.99950 * 15 13 11 17 17 H 1.48494 * 109.47228 * 209.99856 * 15 13 11 18 18 H 1.48496 * 109.47270 * 329.99989 * 15 13 11 19 19 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 20 20 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 21 21 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 22 22 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 23 23 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 24 24 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 25 25 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 26 26 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 27 27 H 1.08999 * 109.53552 * 179.14132 * 4 3 2 28 28 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 29 29 H 1.00897 * 110.99933 * 38.63677 * 6 5 4 30 30 H 1.08997 * 109.46996 * 300.00725 * 7 6 5 31 31 H 1.09002 * 109.46765 * 60.00387 * 7 6 5 32 32 H 1.08997 * 109.47209 * 185.00049 * 8 7 6 33 33 H 1.09002 * 109.47100 * 305.00350 * 8 7 6 34 34 H 1.08992 * 109.46861 * 299.99945 * 10 9 8 35 35 H 1.09000 * 109.47276 * 60.00418 * 10 9 8 36 36 H 0.96998 * 120.00075 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.50416 * 297.70785 * 19 5 4 38 38 H 1.09001 * 109.50010 * 177.59436 * 19 5 4 39 39 H 1.09007 * 109.46691 * 305.86028 * 20 2 1 40 40 H 1.09003 * 109.46730 * 65.82297 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 7 5.5757 0.4485 -0.8474 7 6 6.2425 1.6315 -1.4076 8 6 7.7550 1.5030 -1.2159 9 8 8.2399 0.3979 -1.9812 10 6 9.6493 0.1888 -1.8713 11 6 10.0487 -0.9945 -2.7148 12 1 9.3012 -1.5327 -3.2786 13 6 11.3685 -1.3901 -2.7666 14 7 12.2789 -0.7345 -2.0804 15 14 11.8637 -2.8564 -3.8126 16 1 12.2070 -2.3945 -5.1816 17 1 13.0435 -3.5223 -3.2045 18 1 10.7343 -3.8180 -3.8833 19 6 3.5181 -0.8716 -1.0209 20 6 1.9952 -0.7707 -1.1337 21 1 -0.3634 -1.0249 0.0754 22 1 -0.3633 0.4472 -0.9253 23 1 -0.3633 0.5778 0.8499 24 1 1.7325 1.8608 -0.9375 25 1 1.5635 1.9256 0.8331 26 1 3.7815 0.8566 1.0906 27 1 3.9106 2.3509 0.1315 28 1 3.8888 1.0354 -1.9560 29 1 5.8213 0.3204 0.1227 30 1 6.0164 1.7065 -2.4712 31 1 5.8858 2.5257 -0.8964 32 1 8.2427 2.4186 -1.5505 33 1 7.9748 1.3388 -0.1610 34 1 10.1765 1.0770 -2.2192 35 1 9.9081 -0.0030 -0.8300 36 1 13.2074 -1.0125 -2.1171 37 1 3.7813 -1.3838 -0.0955 38 1 3.9098 -1.4303 -1.8709 39 1 1.5633 -1.7715 -1.1244 40 1 1.7324 -0.2708 -2.0661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395374391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:05 Heat of formation + Delta-G solvation = -76.033666 kcal Electronic energy + Delta-G solvation = -17491.591307 eV Core-core repulsion = 14725.761503 eV Total energy + Delta-G solvation = -2765.829804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23349 -38.67823 -36.80713 -34.91161 -33.05799 -31.79281 -30.01836 -28.55083 -26.35875 -24.48692 -24.09909 -23.23566 -22.70679 -20.78047 -18.62059 -17.52430 -17.20617 -16.72990 -16.44024 -16.03429 -15.79940 -15.51364 -15.32048 -15.11365 -14.61143 -14.07036 -13.91613 -13.60919 -13.33494 -13.19830 -13.00948 -12.86049 -12.65298 -12.48829 -12.32569 -12.14970 -12.05241 -11.82899 -11.56783 -11.31955 -11.21505 -10.85047 -10.18165 -9.30473 -9.17410 -8.31045 -6.43018 1.40339 1.43513 1.55926 2.36273 2.99208 3.02505 3.15855 3.26880 3.81323 3.89987 4.10782 4.20241 4.26585 4.27836 4.39595 4.50049 4.56785 4.57698 4.62063 4.62801 4.72528 4.75546 4.85668 4.88732 5.00313 5.02486 5.02674 5.08460 5.20273 5.25967 5.36081 5.56741 5.98600 6.11337 6.13276 6.18416 6.49643 6.59399 6.87685 7.29312 8.81433 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041020 B = 0.003766 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.421790 B = 7433.640668 C = 7968.454729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.062 3.938 4 C -0.139 4.139 5 C 0.091 3.909 6 N -0.693 5.693 7 C 0.077 3.923 8 C 0.054 3.946 9 O -0.397 6.397 10 C 0.208 3.792 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.984 3.016 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.265 1.265 19 C -0.102 4.102 20 C 0.062 3.938 21 H 0.073 0.927 22 H 0.027 0.973 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.342 0.658 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.039 0.961 34 H -0.016 1.016 35 H -0.017 1.017 36 H 0.271 0.729 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 4.622 4.441 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.067 4.067 4 C -0.179 4.179 5 C -0.019 4.019 6 N -0.324 5.324 7 C -0.052 4.052 8 C -0.023 4.023 9 O -0.317 6.317 10 C 0.133 3.867 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.190 1.190 19 C -0.141 4.141 20 C -0.067 4.067 21 H 0.092 0.908 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.002 0.998 35 H 0.001 0.999 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.050 3.914 4.225 22.790 hybrid contribution 0.400 0.743 -0.215 0.871 sum -21.650 4.657 4.010 22.506 Atomic orbital electron populations 1.22394 0.86086 1.02887 1.00918 1.61939 1.08711 1.14010 1.43658 1.22021 0.94677 0.89078 1.00882 1.22275 0.95636 1.00680 0.99286 1.21617 0.86218 0.96153 0.97939 1.60375 1.07404 1.40760 1.23840 1.21879 0.90807 0.91907 1.00588 1.22607 0.95268 0.89572 0.94859 1.87912 1.24250 1.50125 1.69391 1.19797 0.77347 0.94989 0.94543 1.21393 0.93953 1.14182 1.28886 0.92229 1.25975 0.95639 1.00606 0.97101 1.70070 1.02395 1.42185 1.42486 0.85172 0.77942 0.77896 0.78332 1.19209 1.19816 1.18957 1.21506 0.93913 0.96456 1.02209 1.22057 0.94655 0.98706 0.91260 0.90788 0.95424 0.90530 0.94801 0.89669 0.91377 0.90851 0.91324 0.83921 0.91275 0.91403 0.93422 0.94251 0.99844 0.99899 0.92053 0.91988 0.92016 0.89869 0.94827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.59 127.69 1.22 1.56 16 2 N -0.56 -10.11 4.91 -922.58 -4.53 -14.64 16 3 C 0.06 1.04 5.46 86.33 0.47 1.51 16 4 C -0.14 -2.63 5.35 30.65 0.16 -2.46 16 5 C 0.09 2.13 2.53 45.00 0.11 2.24 16 6 N -0.69 -20.42 6.20 -491.16 -3.05 -23.47 16 7 C 0.08 2.27 5.87 86.30 0.51 2.77 16 8 C 0.05 2.05 6.22 71.98 0.45 2.50 16 9 O -0.40 -20.27 10.27 -148.98 -1.53 -21.80 16 10 C 0.21 12.16 5.69 71.24 0.41 12.56 16 11 C -0.55 -33.74 9.43 25.60 0.24 -33.49 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.00 0.29 5.46 84.65 0.46 0.76 16 14 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 15 Si 0.98 45.49 29.54 68.60 2.03 47.52 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 C -0.10 -2.41 5.70 30.65 0.17 -2.23 16 20 C 0.06 1.18 5.46 86.33 0.47 1.65 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 23 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 24 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 1.21 8.09 -2.38 -0.02 1.19 16 26 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 27 H 0.07 1.25 7.54 -2.39 -0.02 1.23 16 28 H 0.07 1.65 7.80 -2.39 -0.02 1.63 16 29 H 0.34 9.68 8.45 -89.70 -0.76 8.93 16 30 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 31 H 0.07 1.54 7.51 -2.39 -0.02 1.52 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.45 8.12 -2.38 -0.02 1.43 16 40 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -68.60 321.60 -1.89 -70.49 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.22 Total: 11.49 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 4.68 Total: -12.64 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -7.29 Total: -95.06 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.53 Total: -21.80 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.60 -1.89 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395374391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.546 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds