Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47067 * 2 1 4 4 C 1.52998 * 109.47559 * 240.00475 * 2 1 3 5 5 O 1.42909 * 109.46860 * 308.86297 * 4 2 1 6 6 C 1.42899 * 113.99823 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46626 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.47016 * 65.00602 * 7 6 5 9 9 N 1.46904 * 109.47169 * 120.00084 * 2 1 3 10 10 C 1.46903 * 110.99663 * 298.37378 * 9 2 1 11 11 C 1.50705 * 109.46485 * 196.59170 * 10 9 2 12 12 H 1.07994 * 120.00583 * 4.39390 * 11 10 9 13 13 C 1.37882 * 119.99415 * 184.38627 * 11 10 9 14 14 N 1.31516 * 120.00353 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46471 * 90.00292 * 15 13 11 17 17 H 1.48498 * 109.47014 * 210.00236 * 15 13 11 18 18 H 1.48494 * 109.47291 * 330.00749 * 15 13 11 19 19 C 1.46894 * 110.99871 * 62.32805 * 9 2 1 20 20 C 1.53006 * 117.49772 * 154.82306 * 19 9 2 21 21 C 1.53003 * 60.00036 * 252.51107 * 20 19 9 22 22 H 1.09005 * 109.47561 * 60.00078 * 1 2 3 23 23 H 1.09009 * 109.46821 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47455 * 299.99856 * 1 2 3 25 25 H 1.09000 * 109.47586 * 68.86270 * 4 2 1 26 26 H 1.09006 * 109.47308 * 188.86858 * 4 2 1 27 27 H 1.09000 * 109.47360 * 299.99646 * 6 5 4 28 28 H 1.08993 * 109.47335 * 60.00195 * 6 5 4 29 29 H 1.09004 * 109.47077 * 184.99597 * 7 6 5 30 30 H 1.08997 * 109.47737 * 304.99930 * 7 6 5 31 31 H 1.00892 * 111.00502 * 56.04198 * 8 7 6 32 32 H 1.00910 * 110.99913 * 180.02562 * 8 7 6 33 33 H 1.08990 * 109.47322 * 316.59351 * 10 9 2 34 34 H 1.09002 * 109.46813 * 76.59845 * 10 9 2 35 35 H 0.96994 * 120.00421 * 179.97438 * 14 13 11 36 36 H 1.08999 * 115.55118 * 300.53128 * 19 9 2 37 37 H 1.08995 * 117.50055 * 359.97438 * 20 19 9 38 38 H 1.08993 * 117.49659 * 145.02484 * 20 19 9 39 39 H 1.08999 * 117.50267 * 252.50856 * 21 20 19 40 40 H 1.09000 * 117.49930 * 107.48704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4018 -1.9951 -1.3578 6 6 1.8104 -2.7547 -2.4971 7 6 1.0669 -4.0918 -2.5119 8 7 -0.3700 -3.8510 -2.7004 9 7 2.0196 -0.6925 1.1995 10 6 1.5806 -0.0043 2.4208 11 6 2.4095 -0.4750 3.5880 12 1 3.2307 -1.1576 3.4269 13 6 2.1195 -0.0339 4.8618 14 7 1.1192 0.7972 5.0581 15 14 3.1464 -0.6178 6.3089 16 1 4.2859 0.3121 6.5142 17 1 2.3054 -0.6481 7.5324 18 1 3.6642 -1.9813 6.0302 19 6 1.5946 -2.0986 1.2058 20 6 2.4473 -3.0908 1.9994 21 6 2.4789 -3.1073 0.4697 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8118 -0.1241 -2.1322 26 1 3.1185 -0.8604 -1.1735 27 1 1.5777 -2.2000 -3.4061 28 1 2.8839 -2.9361 -2.4469 29 1 1.4423 -4.7073 -3.3294 30 1 1.2278 -4.6076 -1.5653 31 1 -0.5402 -3.3174 -3.5395 32 1 -0.8836 -4.7195 -2.7133 33 1 1.7056 1.0713 2.2966 34 1 0.5304 -0.2290 2.6068 35 1 0.9149 1.1072 5.9542 36 1 0.5175 -2.2643 1.1850 37 1 3.3238 -2.7002 2.5163 38 1 1.9311 -3.9093 2.5008 39 1 1.9836 -3.9367 -0.0350 40 1 3.3759 -2.7274 -0.0192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395614151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = -5.947719 kcal Electronic energy + Delta-G solvation = -18882.131644 eV Core-core repulsion = 16119.340995 eV Total energy + Delta-G solvation = -2762.790649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.83933 -36.81492 -34.66629 -33.78100 -32.56247 -29.73415 -27.82566 -26.23595 -25.61122 -22.15036 -21.92343 -21.51087 -21.07691 -18.40523 -16.59509 -16.45641 -16.16135 -15.24784 -14.77085 -14.64199 -14.42901 -14.15772 -13.58723 -13.45903 -12.90919 -12.55934 -12.14979 -11.86099 -11.73240 -11.54955 -11.27318 -11.00075 -10.74227 -10.67088 -10.52067 -10.37281 -10.14445 -9.73118 -9.49950 -9.14543 -8.97944 -8.70660 -8.55315 -8.27555 -7.07813 -5.89663 -3.88715 3.39150 3.44872 3.48987 4.00817 4.50086 4.51948 4.92334 4.96722 5.09276 5.18092 5.40494 5.45472 5.49681 5.61371 5.65791 5.72836 5.91825 5.96353 5.99494 6.13053 6.20199 6.23937 6.50870 6.56892 6.58960 6.72763 6.89583 7.01034 7.05059 7.15878 7.34474 7.38672 7.58508 7.63929 7.99065 8.26122 8.41949 8.71981 9.19458 9.74072 11.21309 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035235 B = 0.006344 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.475134 B = 4412.353299 C = 4784.699688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 H 0.083 0.917 4 C 0.072 3.928 5 O -0.345 6.345 6 C 0.062 3.938 7 C 0.063 3.937 8 N -0.839 5.839 9 N -0.507 5.507 10 C 0.196 3.804 11 C -0.494 4.494 12 H 0.066 0.934 13 C 0.052 3.948 14 N -0.903 5.903 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.056 3.944 20 C -0.173 4.173 21 C -0.149 4.149 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.336 0.664 32 H 0.338 0.662 33 H 0.022 0.978 34 H -0.001 1.001 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -7.530 -15.871 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.023 4.023 3 H 0.100 0.900 4 C -0.005 4.005 5 O -0.263 6.263 6 C -0.016 4.016 7 C -0.067 4.067 8 N -0.369 5.369 9 N -0.231 5.231 10 C 0.071 3.929 11 C -0.533 4.533 12 H 0.085 0.915 13 C -0.148 4.148 14 N -0.544 5.544 15 Si 0.722 3.278 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.053 4.053 20 C -0.210 4.210 21 C -0.186 4.186 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.040 0.960 34 H 0.016 0.984 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.463 -7.085 -14.896 16.502 hybrid contribution -0.136 -0.590 -0.196 0.637 sum 0.327 -7.675 -15.092 16.935 Atomic orbital electron populations 1.22307 0.97565 1.02682 1.00857 1.21685 0.93334 0.96960 0.90274 0.89951 1.22522 0.96623 0.84646 0.96753 1.88261 1.66141 1.28840 1.43099 1.22376 0.97199 0.92401 0.89592 1.21868 0.88217 0.95598 1.01043 1.58539 1.08177 1.24651 1.45538 1.62205 1.58291 1.00337 1.02314 1.19665 0.94686 0.93279 0.85246 1.21277 1.14500 1.26796 0.90699 0.91549 1.24975 0.95451 0.95539 0.98842 1.69961 1.29130 1.33565 1.21704 0.86570 0.80037 0.79138 0.82091 1.20876 1.21512 1.19884 1.21768 0.93642 0.86672 1.03241 1.23079 1.03528 1.00780 0.93630 1.22790 1.01279 1.00964 0.93615 0.93887 0.91432 0.92485 0.94523 0.93203 0.94652 0.93495 0.95017 0.89807 0.85178 0.84995 0.96004 0.98353 0.93191 0.91296 0.88236 0.90662 0.90409 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.36 37.15 0.31 -2.89 16 2 C 0.09 1.60 2.93 -67.72 -0.20 1.41 16 3 H 0.08 1.51 8.05 -51.93 -0.42 1.10 16 4 C 0.07 1.10 5.04 37.16 0.19 1.28 16 5 O -0.35 -5.16 5.10 -35.23 -0.18 -5.34 16 6 C 0.06 0.72 5.52 37.16 0.20 0.92 16 7 C 0.06 0.65 7.08 -3.82 -0.03 0.62 16 8 N -0.84 -8.63 9.57 -10.37 -0.10 -8.73 16 9 N -0.51 -11.15 4.58 -220.14 -1.01 -12.16 16 10 C 0.20 5.19 3.86 -4.97 -0.02 5.17 16 11 C -0.49 -14.03 8.33 -34.44 -0.29 -14.32 16 12 H 0.07 1.87 5.60 -52.49 -0.29 1.57 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.06 1.15 3.06 -67.71 -0.21 0.95 16 20 C -0.17 -3.47 9.41 -26.73 -0.25 -3.72 16 21 C -0.15 -2.57 6.81 -26.73 -0.18 -2.76 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 1.30 5.89 -51.92 -0.31 1.00 16 24 H 0.06 1.15 6.83 -51.93 -0.35 0.80 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.77 7.61 -51.93 -0.40 0.38 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.97 6.14 -51.93 -0.32 0.65 16 31 H 0.34 2.98 8.99 -39.30 -0.35 2.63 16 32 H 0.34 2.84 9.08 -39.29 -0.36 2.48 16 33 H 0.02 0.62 7.92 -51.93 -0.41 0.20 16 34 H 0.00 -0.04 7.19 -51.93 -0.37 -0.41 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 37 H 0.10 2.19 6.22 -51.93 -0.32 1.87 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.22 5.65 -51.93 -0.29 0.92 16 40 H 0.08 1.35 7.38 -51.93 -0.38 0.96 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -30.82 305.74 -8.13 -38.95 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.60 Total: 4.13 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.57 Total: -11.93 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.37 Total: -47.57 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.18 Total: -5.34 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.82 -8.13 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395614151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.004 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds