Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47067 * 2 1 4 4 C 1.52998 * 109.47559 * 240.00475 * 2 1 3 5 5 O 1.42909 * 109.46860 * 308.86297 * 4 2 1 6 6 C 1.42899 * 113.99823 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46626 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.47016 * 65.00602 * 7 6 5 9 9 N 1.46904 * 109.47169 * 120.00084 * 2 1 3 10 10 C 1.46903 * 110.99663 * 298.37378 * 9 2 1 11 11 C 1.50705 * 109.46485 * 196.59170 * 10 9 2 12 12 H 1.07994 * 120.00583 * 4.39390 * 11 10 9 13 13 C 1.37882 * 119.99415 * 184.38627 * 11 10 9 14 14 N 1.31516 * 120.00353 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46471 * 90.00292 * 15 13 11 17 17 H 1.48498 * 109.47014 * 210.00236 * 15 13 11 18 18 H 1.48494 * 109.47291 * 330.00749 * 15 13 11 19 19 C 1.46894 * 110.99871 * 62.32805 * 9 2 1 20 20 C 1.53006 * 117.49772 * 154.82306 * 19 9 2 21 21 C 1.53003 * 60.00036 * 252.51107 * 20 19 9 22 22 H 1.09005 * 109.47561 * 60.00078 * 1 2 3 23 23 H 1.09009 * 109.46821 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47455 * 299.99856 * 1 2 3 25 25 H 1.09000 * 109.47586 * 68.86270 * 4 2 1 26 26 H 1.09006 * 109.47308 * 188.86858 * 4 2 1 27 27 H 1.09000 * 109.47360 * 299.99646 * 6 5 4 28 28 H 1.08993 * 109.47335 * 60.00195 * 6 5 4 29 29 H 1.09004 * 109.47077 * 184.99597 * 7 6 5 30 30 H 1.08997 * 109.47737 * 304.99930 * 7 6 5 31 31 H 1.00892 * 111.00502 * 56.04198 * 8 7 6 32 32 H 1.00910 * 110.99913 * 180.02562 * 8 7 6 33 33 H 1.08990 * 109.47322 * 316.59351 * 10 9 2 34 34 H 1.09002 * 109.46813 * 76.59845 * 10 9 2 35 35 H 0.96994 * 120.00421 * 179.97438 * 14 13 11 36 36 H 1.08999 * 115.55118 * 300.53128 * 19 9 2 37 37 H 1.08995 * 117.50055 * 359.97438 * 20 19 9 38 38 H 1.08993 * 117.49659 * 145.02484 * 20 19 9 39 39 H 1.08999 * 117.50267 * 252.50856 * 21 20 19 40 40 H 1.09000 * 117.49930 * 107.48704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4018 -1.9951 -1.3578 6 6 1.8104 -2.7547 -2.4971 7 6 1.0669 -4.0918 -2.5119 8 7 -0.3700 -3.8510 -2.7004 9 7 2.0196 -0.6925 1.1995 10 6 1.5806 -0.0043 2.4208 11 6 2.4095 -0.4750 3.5880 12 1 3.2307 -1.1576 3.4269 13 6 2.1195 -0.0339 4.8618 14 7 1.1192 0.7972 5.0581 15 14 3.1464 -0.6178 6.3089 16 1 4.2859 0.3121 6.5142 17 1 2.3054 -0.6481 7.5324 18 1 3.6642 -1.9813 6.0302 19 6 1.5946 -2.0986 1.2058 20 6 2.4473 -3.0908 1.9994 21 6 2.4789 -3.1073 0.4697 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8118 -0.1241 -2.1322 26 1 3.1185 -0.8604 -1.1735 27 1 1.5777 -2.2000 -3.4061 28 1 2.8839 -2.9361 -2.4469 29 1 1.4423 -4.7073 -3.3294 30 1 1.2278 -4.6076 -1.5653 31 1 -0.5402 -3.3174 -3.5395 32 1 -0.8836 -4.7195 -2.7133 33 1 1.7056 1.0713 2.2966 34 1 0.5304 -0.2290 2.6068 35 1 0.9149 1.1072 5.9542 36 1 0.5175 -2.2643 1.1850 37 1 3.3238 -2.7002 2.5163 38 1 1.9311 -3.9093 2.5008 39 1 1.9836 -3.9367 -0.0350 40 1 3.3759 -2.7274 -0.0192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395614151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = -28.888686 kcal Electronic energy + Delta-G solvation = -18883.126439 eV Core-core repulsion = 16119.340995 eV Total energy + Delta-G solvation = -2763.785444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26075 -38.09173 -35.91631 -35.18877 -34.50837 -31.47122 -28.80095 -28.15342 -27.03342 -24.09978 -23.16750 -22.80828 -22.52194 -20.02093 -18.54210 -17.61601 -17.20772 -16.68552 -16.34724 -16.15676 -15.87620 -15.57369 -15.06850 -14.63250 -14.25751 -14.03731 -13.74968 -13.57506 -13.42920 -12.91117 -12.82554 -12.57946 -12.48376 -12.30576 -12.20921 -11.85184 -11.57750 -11.44235 -11.16067 -10.99030 -10.56301 -10.50150 -9.91117 -9.43174 -8.90038 -8.12089 -6.19722 1.41758 1.43211 1.54270 2.44429 2.97415 3.20075 3.28522 3.39021 3.79557 4.06521 4.25330 4.28851 4.35451 4.39463 4.43301 4.56522 4.59145 4.68922 4.72565 4.77486 4.79903 4.95146 5.00211 5.05044 5.11138 5.23544 5.23588 5.32152 5.38610 5.56351 5.60503 5.80565 6.17421 6.31806 6.52703 6.62290 6.70835 6.77949 6.98264 7.48645 8.98865 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035235 B = 0.006344 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.475134 B = 4412.353299 C = 4784.699688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 H 0.079 0.921 4 C 0.083 3.917 5 O -0.365 6.365 6 C 0.056 3.944 7 C 0.066 3.934 8 N -0.857 5.857 9 N -0.508 5.508 10 C 0.215 3.785 11 C -0.506 4.506 12 H 0.068 0.932 13 C -0.003 4.003 14 N -0.941 5.941 15 Si 0.963 3.037 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.038 3.962 20 C -0.189 4.189 21 C -0.098 4.098 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.023 0.977 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.344 0.656 32 H 0.347 0.653 33 H -0.005 1.005 34 H -0.037 1.037 35 H 0.261 0.739 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 -8.971 -17.455 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.031 4.031 3 H 0.097 0.903 4 C 0.006 3.994 5 O -0.284 6.284 6 C -0.021 4.021 7 C -0.065 4.065 8 N -0.389 5.389 9 N -0.232 5.232 10 C 0.088 3.912 11 C -0.544 4.544 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.582 5.582 15 Si 0.788 3.212 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.071 4.071 20 C -0.227 4.227 21 C -0.136 4.136 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.013 0.987 34 H -0.020 1.020 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.659 -8.541 -16.514 18.666 hybrid contribution -0.559 -0.146 0.209 0.614 sum 1.100 -8.687 -16.305 18.508 Atomic orbital electron populations 1.22137 0.97520 1.01787 1.00494 1.21859 0.93423 0.97271 0.90550 0.90261 1.22313 0.96349 0.85245 0.95487 1.88223 1.66443 1.28777 1.44985 1.22613 0.98020 0.92613 0.88867 1.21844 0.88247 0.95071 1.01334 1.58528 1.08503 1.25573 1.46268 1.62135 1.58275 1.01070 1.01728 1.19265 0.92426 0.92072 0.87397 1.21595 1.14599 1.26616 0.91595 0.91349 1.25878 0.96605 0.95560 1.01894 1.70103 1.30844 1.34836 1.22445 0.85470 0.78400 0.79063 0.78229 1.19962 1.21167 1.18829 1.21703 0.93095 0.86301 1.06022 1.23096 1.02760 1.00969 0.95846 1.22748 1.00030 0.99280 0.91513 0.91171 0.92490 0.95754 0.91865 0.93030 0.93259 0.92423 0.92429 0.91141 0.84339 0.84007 0.98662 1.01966 0.93074 0.93259 0.90294 0.89910 0.88031 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 8.36 71.98 0.60 -5.35 16 2 C 0.08 2.86 2.93 44.91 0.13 3.00 16 3 H 0.08 2.93 8.05 -2.38 -0.02 2.92 16 4 C 0.08 2.35 5.04 71.98 0.36 2.71 16 5 O -0.37 -9.99 5.10 -148.98 -0.76 -10.75 16 6 C 0.06 1.09 5.52 71.98 0.40 1.49 16 7 C 0.07 1.14 7.08 86.30 0.61 1.75 16 8 N -0.86 -15.54 9.57 -186.71 -1.79 -17.32 16 9 N -0.51 -22.71 4.58 -850.40 -3.90 -26.61 16 10 C 0.21 11.89 3.86 85.56 0.33 12.22 16 11 C -0.51 -29.42 8.33 25.60 0.21 -29.20 16 12 H 0.07 3.89 5.60 -2.91 -0.02 3.87 16 13 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 14 N -0.94 -58.72 13.29 21.45 0.28 -58.43 16 15 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 19 C 0.04 1.56 3.06 44.92 0.14 1.70 16 20 C -0.19 -7.51 9.41 30.60 0.29 -7.22 16 21 C -0.10 -3.19 6.81 30.60 0.21 -2.99 16 22 H 0.07 2.16 8.14 -2.38 -0.02 2.15 16 23 H 0.06 2.22 5.89 -2.38 -0.01 2.21 16 24 H 0.02 1.02 6.83 -2.39 -0.02 1.00 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.45 7.61 -2.38 -0.02 1.43 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.41 6.14 -2.39 -0.01 1.39 16 31 H 0.34 5.23 8.99 -89.70 -0.81 4.42 16 32 H 0.35 5.09 9.08 -89.69 -0.81 4.28 16 33 H 0.00 -0.28 7.92 -2.39 -0.02 -0.30 16 34 H -0.04 -2.30 7.19 -2.39 -0.02 -2.32 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 37 H 0.08 3.47 6.22 -2.39 -0.01 3.45 16 38 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.10 2.86 5.65 -2.39 -0.01 2.85 16 40 H 0.09 2.71 7.38 -2.39 -0.02 2.70 16 Total: -1.00 -67.85 305.74 -0.97 -68.83 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.58 Total: 17.99 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.74 Total: -21.58 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -5.40 Total: -102.37 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.76 Total: -10.75 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -67.85 -0.97 -68.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395614151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.938 kcal (2) G-P(sol) polarization free energy of solvation -67.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds