Wall clock time and date at job start Mon Mar 30 2020 04:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00129 * 2 1 4 4 C 1.46905 * 110.99943 * 123.95420 * 2 1 3 5 5 C 1.52998 * 109.47048 * 75.82465 * 4 2 1 6 6 H 1.09003 * 109.47204 * 300.57256 * 5 4 2 7 7 O 1.42901 * 109.47514 * 60.57440 * 5 4 2 8 8 C 1.53002 * 109.47147 * 180.57296 * 5 4 2 9 9 N 1.46896 * 109.47171 * 179.97438 * 8 5 4 10 10 C 1.48533 * 111.00418 * 287.39643 * 9 8 5 11 11 C 1.54936 * 103.22923 * 200.27969 * 10 9 8 12 12 C 1.54593 * 102.91970 * 37.41340 * 11 10 9 13 13 H 1.09002 * 110.39123 * 97.00620 * 12 11 10 14 14 C 1.50703 * 110.30607 * 219.12412 * 12 11 10 15 15 H 1.08001 * 119.99792 * 115.71816 * 14 12 11 16 16 C 1.37881 * 120.00081 * 295.71721 * 14 12 11 17 17 N 1.31512 * 120.00067 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99813 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47172 * 90.00227 * 18 16 14 20 20 H 1.48496 * 109.47109 * 330.00082 * 18 16 14 21 21 H 1.48495 * 109.47146 * 209.99922 * 18 16 14 22 22 C 1.47901 * 111.00148 * 169.99973 * 9 8 5 23 23 H 1.08995 * 109.47055 * 296.04563 * 1 2 3 24 24 H 1.08999 * 109.47092 * 56.04450 * 1 2 3 25 25 H 1.08999 * 109.47198 * 176.04752 * 1 2 3 26 26 H 1.08999 * 109.47449 * 188.87183 * 3 2 1 27 27 H 1.09001 * 109.47357 * 308.87398 * 3 2 1 28 28 H 1.08998 * 109.47514 * 68.87284 * 3 2 1 29 29 H 1.08994 * 109.47074 * 315.82499 * 4 2 1 30 30 H 1.09002 * 109.47027 * 195.82165 * 4 2 1 31 31 H 0.96702 * 113.99985 * 59.99735 * 7 5 4 32 32 H 1.09001 * 109.47020 * 59.99950 * 8 5 4 33 33 H 1.09003 * 109.47036 * 300.00063 * 8 5 4 34 34 H 1.09002 * 110.66464 * 318.71591 * 10 9 8 35 35 H 1.09004 * 110.66562 * 81.67345 * 10 9 8 36 36 H 1.09003 * 110.72235 * 279.05308 * 11 10 9 37 37 H 1.09003 * 110.72307 * 155.76987 * 11 10 9 38 38 H 0.97004 * 120.00111 * 359.97438 * 17 16 14 39 39 H 1.08999 * 109.91419 * 26.49009 * 22 9 8 40 40 H 1.09001 * 109.91786 * 265.20130 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8484 -2.2627 0.8564 6 1 0.7961 -2.5018 0.7024 7 8 2.5907 -2.6023 -0.3165 8 6 2.3836 -3.0604 2.0473 9 7 2.2419 -4.4974 1.7776 10 6 0.8195 -4.9171 1.8615 11 6 0.9139 -6.4478 2.0818 12 6 2.1441 -6.5885 3.0074 13 1 1.8294 -6.6670 4.0481 14 6 2.9581 -7.7948 2.6157 15 1 3.9649 -7.6698 2.2454 16 6 2.4175 -9.0581 2.7301 17 7 1.1914 -9.2103 3.1806 18 14 3.4267 -10.5533 2.2452 19 1 4.1860 -11.0416 3.4243 20 1 4.3754 -10.1810 1.1651 21 1 2.5212 -11.6258 1.7608 22 6 2.9596 -5.3003 2.7913 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0736 1.3467 -0.1585 27 1 1.5235 1.9418 -0.8001 28 1 1.7799 1.8434 0.9585 29 1 1.4376 -0.5090 2.0380 30 1 3.0487 -0.5251 1.2816 31 1 3.5373 -2.4160 -0.2506 32 1 1.8174 -2.8015 2.9420 33 1 3.4358 -2.8213 2.2014 34 1 0.3259 -4.4365 2.7062 35 1 0.2963 -4.6911 0.9323 36 1 1.0814 -6.9640 1.1365 37 1 0.0163 -6.8228 2.5736 38 1 0.6674 -8.4339 3.4328 39 1 3.0283 -4.7432 3.7256 40 1 3.9575 -5.5488 2.4298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397648737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:54 Heat of formation + Delta-G solvation = -45.019209 kcal Electronic energy + Delta-G solvation = -18113.264155 eV Core-core repulsion = 15348.779239 eV Total energy + Delta-G solvation = -2764.484916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.94940 -37.67444 -35.82003 -33.40775 -31.07188 -29.07508 -28.25921 -27.79162 -25.63293 -23.79580 -22.44951 -21.17404 -20.15284 -19.57414 -16.86841 -16.52160 -16.08426 -15.50401 -15.05911 -14.72558 -14.67523 -14.16888 -13.70657 -13.19529 -13.17521 -12.73392 -12.61674 -12.04956 -11.91227 -11.80715 -11.75956 -11.45178 -11.13555 -11.00474 -10.71896 -10.55833 -10.41781 -10.06285 -9.81686 -9.72875 -9.47539 -8.49158 -8.40680 -8.30416 -7.74908 -6.28122 -3.98927 3.47450 3.52118 3.64862 3.67689 4.43940 4.58751 4.64190 4.89787 4.90992 5.10410 5.11877 5.21720 5.36065 5.38511 5.40531 5.45378 5.50225 5.61220 5.68146 5.74725 5.80171 5.91600 6.06852 6.13991 6.19100 6.43427 6.72599 6.78619 6.81972 6.89389 7.03739 7.28049 7.35290 7.69121 7.81615 8.01946 8.29513 8.50119 8.94633 9.71884 11.10174 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054422 B = 0.004410 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.372102 B = 6347.430558 C = 6486.465042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.536 5.536 3 C 0.025 3.975 4 C 0.021 3.979 5 C 0.123 3.877 6 H 0.092 0.908 7 O -0.532 6.532 8 C 0.014 3.986 9 N -0.501 5.501 10 C 0.033 3.967 11 C -0.109 4.109 12 C 0.025 3.975 13 H 0.019 0.981 14 C -0.586 4.586 15 H 0.051 0.949 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 1.070 2.930 19 H -0.290 1.290 20 H -0.288 1.288 21 H -0.285 1.285 22 C 0.052 3.948 23 H 0.022 0.978 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.366 0.634 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.270 0.730 39 H 0.017 0.983 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 18.525 -3.240 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.123 4.123 4 C -0.108 4.108 5 C 0.063 3.937 6 H 0.110 0.890 7 O -0.335 6.335 8 C -0.116 4.116 9 N -0.225 5.225 10 C -0.095 4.095 11 C -0.148 4.148 12 C 0.006 3.994 13 H 0.037 0.963 14 C -0.624 4.624 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.552 5.552 18 Si 0.899 3.101 19 H -0.216 1.216 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.075 4.075 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.212 0.788 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.004 16.377 -4.506 16.986 hybrid contribution -0.066 2.593 2.072 3.320 sum -0.062 18.971 -2.434 19.126 Atomic orbital electron populations 1.22446 0.87332 1.02636 1.00137 1.61854 1.07955 1.13189 1.42975 1.22403 1.00946 0.88979 1.00022 1.22924 1.00513 0.95745 0.91604 1.21757 0.96876 0.89574 0.85517 0.88992 1.86634 1.22825 1.87200 1.36823 1.22951 1.00872 0.91295 0.96455 1.64677 1.09429 1.01261 1.47145 1.23304 0.89256 0.98185 0.98706 1.22678 0.99057 0.91568 1.01449 1.19644 0.92509 0.92790 0.94498 0.96305 1.22020 1.01236 0.91797 1.47343 0.93094 1.25788 0.97324 1.00892 0.94645 1.70768 1.09263 1.34473 1.40701 0.83523 0.74973 0.75315 0.76291 1.21644 1.21437 1.21101 1.22971 0.99263 0.94480 0.90820 0.95903 0.91373 0.91019 0.91363 0.91436 0.95973 0.94027 0.90618 0.78833 0.94837 0.91143 0.95520 0.91485 0.91248 0.93030 0.91830 0.96457 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.39 60.06 0.56 0.79 16 2 N -0.54 -5.89 4.82 -251.27 -1.21 -7.10 16 3 C 0.02 0.21 9.52 60.06 0.57 0.79 16 4 C 0.02 0.23 4.66 -3.82 -0.02 0.21 16 5 C 0.12 1.67 3.06 -26.73 -0.08 1.59 16 6 H 0.09 1.36 6.14 -51.93 -0.32 1.04 16 7 O -0.53 -8.10 13.08 -35.23 -0.46 -8.56 16 8 C 0.01 0.21 4.37 -3.83 -0.02 0.20 16 9 N -0.50 -9.75 5.11 -230.46 -1.18 -10.93 16 10 C 0.03 0.65 5.91 -1.90 -0.01 0.64 16 11 C -0.11 -2.58 5.56 -24.87 -0.14 -2.72 16 12 C 0.02 0.63 2.54 -90.42 -0.23 0.40 16 13 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 14 C -0.59 -16.61 8.38 -34.44 -0.29 -16.90 16 15 H 0.05 1.45 7.34 -52.49 -0.39 1.06 16 16 C 0.02 0.50 5.34 -17.82 -0.10 0.40 16 17 N -0.92 -27.63 13.45 55.43 0.75 -26.89 16 18 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.05 1.12 6.31 -2.76 -0.02 1.11 16 23 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 24 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 25 H 0.07 0.77 6.88 -51.93 -0.36 0.41 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 28 H 0.02 0.18 8.13 -51.93 -0.42 -0.25 16 29 H 0.04 0.43 7.96 -51.93 -0.41 0.02 16 30 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 31 H 0.37 4.44 9.05 45.56 0.41 4.85 16 32 H 0.03 0.49 7.83 -51.93 -0.41 0.08 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.49 7.81 -51.93 -0.41 0.08 16 35 H 0.07 1.25 7.80 -51.93 -0.40 0.85 16 36 H 0.07 1.80 7.86 -51.93 -0.41 1.40 16 37 H 0.05 1.22 7.10 -51.93 -0.37 0.85 16 38 H 0.27 8.05 5.65 -40.82 -0.23 7.82 16 39 H 0.02 0.34 7.77 -51.93 -0.40 -0.06 16 40 H 0.07 1.65 7.39 -51.93 -0.38 1.27 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -31.60 313.73 -8.44 -40.03 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.22 Total: 1.73 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 0.24 Total: -13.49 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -1.64 Total: -44.92 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.46 Total: -8.56 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.60 -8.44 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397648737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.987 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds