Wall clock time and date at job start Mon Mar 30 2020 04:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00129 * 2 1 4 4 C 1.46905 * 110.99943 * 123.95420 * 2 1 3 5 5 C 1.52998 * 109.47048 * 75.82465 * 4 2 1 6 6 H 1.09003 * 109.47204 * 300.57256 * 5 4 2 7 7 O 1.42901 * 109.47514 * 60.57440 * 5 4 2 8 8 C 1.53002 * 109.47147 * 180.57296 * 5 4 2 9 9 N 1.46896 * 109.47171 * 179.97438 * 8 5 4 10 10 C 1.48533 * 111.00418 * 287.39643 * 9 8 5 11 11 C 1.54936 * 103.22923 * 200.27969 * 10 9 8 12 12 C 1.54593 * 102.91970 * 37.41340 * 11 10 9 13 13 H 1.09002 * 110.39123 * 97.00620 * 12 11 10 14 14 C 1.50703 * 110.30607 * 219.12412 * 12 11 10 15 15 H 1.08001 * 119.99792 * 115.71816 * 14 12 11 16 16 C 1.37881 * 120.00081 * 295.71721 * 14 12 11 17 17 N 1.31512 * 120.00067 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99813 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47172 * 90.00227 * 18 16 14 20 20 H 1.48496 * 109.47109 * 330.00082 * 18 16 14 21 21 H 1.48495 * 109.47146 * 209.99922 * 18 16 14 22 22 C 1.47901 * 111.00148 * 169.99973 * 9 8 5 23 23 H 1.08995 * 109.47055 * 296.04563 * 1 2 3 24 24 H 1.08999 * 109.47092 * 56.04450 * 1 2 3 25 25 H 1.08999 * 109.47198 * 176.04752 * 1 2 3 26 26 H 1.08999 * 109.47449 * 188.87183 * 3 2 1 27 27 H 1.09001 * 109.47357 * 308.87398 * 3 2 1 28 28 H 1.08998 * 109.47514 * 68.87284 * 3 2 1 29 29 H 1.08994 * 109.47074 * 315.82499 * 4 2 1 30 30 H 1.09002 * 109.47027 * 195.82165 * 4 2 1 31 31 H 0.96702 * 113.99985 * 59.99735 * 7 5 4 32 32 H 1.09001 * 109.47020 * 59.99950 * 8 5 4 33 33 H 1.09003 * 109.47036 * 300.00063 * 8 5 4 34 34 H 1.09002 * 110.66464 * 318.71591 * 10 9 8 35 35 H 1.09004 * 110.66562 * 81.67345 * 10 9 8 36 36 H 1.09003 * 110.72235 * 279.05308 * 11 10 9 37 37 H 1.09003 * 110.72307 * 155.76987 * 11 10 9 38 38 H 0.97004 * 120.00111 * 359.97438 * 17 16 14 39 39 H 1.08999 * 109.91419 * 26.49009 * 22 9 8 40 40 H 1.09001 * 109.91786 * 265.20130 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8484 -2.2627 0.8564 6 1 0.7961 -2.5018 0.7024 7 8 2.5907 -2.6023 -0.3165 8 6 2.3836 -3.0604 2.0473 9 7 2.2419 -4.4974 1.7776 10 6 0.8195 -4.9171 1.8615 11 6 0.9139 -6.4478 2.0818 12 6 2.1441 -6.5885 3.0074 13 1 1.8294 -6.6670 4.0481 14 6 2.9581 -7.7948 2.6157 15 1 3.9649 -7.6698 2.2454 16 6 2.4175 -9.0581 2.7301 17 7 1.1914 -9.2103 3.1806 18 14 3.4267 -10.5533 2.2452 19 1 4.1860 -11.0416 3.4243 20 1 4.3754 -10.1810 1.1651 21 1 2.5212 -11.6258 1.7608 22 6 2.9596 -5.3003 2.7913 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0736 1.3467 -0.1585 27 1 1.5235 1.9418 -0.8001 28 1 1.7799 1.8434 0.9585 29 1 1.4376 -0.5090 2.0380 30 1 3.0487 -0.5251 1.2816 31 1 3.5373 -2.4160 -0.2506 32 1 1.8174 -2.8015 2.9420 33 1 3.4358 -2.8213 2.2014 34 1 0.3259 -4.4365 2.7062 35 1 0.2963 -4.6911 0.9323 36 1 1.0814 -6.9640 1.1365 37 1 0.0163 -6.8228 2.5736 38 1 0.6674 -8.4339 3.4328 39 1 3.0283 -4.7432 3.7256 40 1 3.9575 -5.5488 2.4298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397648737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:54 Heat of formation + Delta-G solvation = -70.153941 kcal Electronic energy + Delta-G solvation = -18114.354079 eV Core-core repulsion = 15348.779239 eV Total energy + Delta-G solvation = -2765.574840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29031 -38.92035 -36.88604 -35.32586 -32.63621 -30.38702 -30.06730 -28.49719 -26.94346 -25.75153 -23.58908 -22.18769 -21.68577 -21.44262 -18.97663 -17.72101 -17.06500 -16.66738 -16.29319 -16.09963 -15.68773 -15.59928 -15.31912 -14.69402 -14.46454 -14.30256 -13.75896 -13.32957 -13.25655 -13.03269 -12.71729 -12.61420 -12.54654 -12.51319 -12.45635 -12.15417 -11.93757 -11.81371 -11.59716 -11.55856 -10.77837 -10.52136 -10.46473 -9.29731 -9.23202 -8.57119 -6.28711 1.53855 1.62940 1.80618 2.59215 2.74704 3.18203 3.23630 3.66736 3.79474 3.96817 4.10082 4.11684 4.16963 4.31820 4.34585 4.37558 4.42064 4.46976 4.58139 4.65537 4.67449 4.71781 4.76240 4.83453 4.97721 5.00733 5.01007 5.10020 5.15615 5.35796 5.46112 5.99557 6.01851 6.09369 6.12430 6.21450 6.26532 6.68974 7.04682 7.49960 8.81943 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054422 B = 0.004410 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.372102 B = 6347.430558 C = 6486.465042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.556 5.556 3 C 0.026 3.974 4 C 0.030 3.970 5 C 0.130 3.870 6 H 0.078 0.922 7 O -0.554 6.554 8 C 0.015 3.985 9 N -0.513 5.513 10 C 0.047 3.953 11 C -0.102 4.102 12 C 0.013 3.987 13 H -0.003 1.003 14 C -0.600 4.600 15 H 0.044 0.956 16 C -0.032 4.032 17 N -0.939 5.939 18 Si 1.115 2.885 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.285 1.285 22 C 0.063 3.937 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.378 0.622 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.035 0.965 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 20.210 -3.440 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.280 5.280 3 C -0.122 4.122 4 C -0.099 4.099 5 C 0.070 3.930 6 H 0.096 0.904 7 O -0.360 6.360 8 C -0.114 4.114 9 N -0.237 5.237 10 C -0.081 4.081 11 C -0.141 4.141 12 C -0.006 4.006 13 H 0.015 0.985 14 C -0.638 4.638 15 H 0.063 0.937 16 C -0.230 4.230 17 N -0.577 5.577 18 Si 0.938 3.062 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.210 1.210 22 C -0.064 4.064 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.226 0.774 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.759 18.102 -4.701 18.718 hybrid contribution -0.301 2.125 2.125 3.020 sum 0.458 20.227 -2.576 20.396 Atomic orbital electron populations 1.22446 0.87060 1.02054 1.01018 1.61820 1.08459 1.14585 1.43162 1.22435 1.01245 0.87796 1.00747 1.22772 1.01573 0.93641 0.91892 1.21671 0.95785 0.91235 0.84306 0.90392 1.86595 1.24044 1.87608 1.37711 1.23057 1.02305 0.88373 0.97634 1.64620 1.08740 1.03785 1.46597 1.23160 0.89994 0.94895 1.00002 1.22443 0.97870 0.94598 0.99206 1.19671 0.93571 0.94039 0.93357 0.98540 1.22380 1.01295 0.93255 1.46906 0.93725 1.27187 0.97594 1.04160 0.94084 1.70876 1.10212 1.34109 1.42502 0.82940 0.74048 0.72248 0.76973 1.19887 1.19932 1.21042 1.22708 0.98131 0.93345 0.92247 0.95044 0.90479 0.92354 0.90853 0.90698 0.95217 0.93245 0.89212 0.77423 0.93690 0.89534 0.93686 0.90370 0.94321 0.94045 0.92867 0.94671 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.39 127.69 1.20 1.60 16 2 N -0.56 -10.88 4.82 -948.88 -4.58 -15.46 16 3 C 0.03 0.37 9.52 127.69 1.22 1.59 16 4 C 0.03 0.57 4.66 86.30 0.40 0.97 16 5 C 0.13 3.25 3.06 30.59 0.09 3.34 16 6 H 0.08 2.17 6.14 -2.39 -0.01 2.15 16 7 O -0.55 -15.91 13.08 -148.98 -1.95 -17.86 16 8 C 0.02 0.42 4.37 86.30 0.38 0.80 16 9 N -0.51 -19.23 5.11 -883.03 -4.51 -23.75 16 10 C 0.05 1.81 5.91 86.65 0.51 2.32 16 11 C -0.10 -4.95 5.56 31.80 0.18 -4.77 16 12 C 0.01 0.65 2.54 -10.66 -0.03 0.63 16 13 H 0.00 -0.19 7.95 -2.39 -0.02 -0.21 16 14 C -0.60 -34.61 8.38 25.60 0.21 -34.39 16 15 H 0.04 2.57 7.34 -2.91 -0.02 2.54 16 16 C -0.03 -1.88 5.34 84.66 0.45 -1.42 16 17 N -0.94 -57.87 13.45 21.45 0.29 -57.58 16 18 Si 1.12 51.51 29.90 68.60 2.05 53.56 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 C 0.06 2.70 6.31 86.44 0.55 3.25 16 23 H 0.03 0.50 8.09 -2.39 -0.02 0.48 16 24 H 0.08 1.21 8.07 -2.39 -0.02 1.19 16 25 H 0.06 1.19 6.88 -2.39 -0.02 1.17 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.96 8.04 -2.39 -0.02 0.94 16 28 H 0.03 0.39 8.13 -2.39 -0.02 0.37 16 29 H 0.05 0.87 7.96 -2.39 -0.02 0.85 16 30 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 31 H 0.38 8.41 9.05 -74.06 -0.67 7.74 16 32 H 0.04 1.17 7.83 -2.39 -0.02 1.15 16 33 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 34 H 0.04 1.57 7.81 -2.39 -0.02 1.55 16 35 H 0.08 2.83 7.80 -2.39 -0.02 2.82 16 36 H 0.04 2.06 7.86 -2.39 -0.02 2.04 16 37 H 0.04 2.03 7.10 -2.39 -0.02 2.01 16 38 H 0.26 16.06 5.65 -92.71 -0.52 15.53 16 39 H 0.04 1.35 7.77 -2.39 -0.02 1.33 16 40 H 0.06 2.76 7.39 -2.39 -0.02 2.74 16 Total: -1.00 -68.00 313.73 -2.96 -70.97 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.57 Total: 16.22 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 5.16 Total: -26.10 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -8.80 Total: -96.79 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.95 Total: -17.86 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -68.00 -2.96 -70.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397648737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.811 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds