Wall clock time and date at job start Mon Mar 30 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46473 * 2 1 4 4 C 1.42905 * 113.99534 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.90767 * 26.13535 * 4 3 2 6 6 C 1.54909 * 110.99134 * 262.26608 * 4 3 2 7 7 N 1.47840 * 104.79737 * 204.83919 * 6 4 3 8 8 C 1.46898 * 111.00153 * 146.36676 * 7 6 4 9 9 C 1.53000 * 109.47145 * 69.15663 * 8 7 6 10 10 C 1.50703 * 109.47216 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99667 * 0.02562 * 10 9 8 12 12 C 1.37869 * 119.99867 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99894 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00401 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47103 * 89.99793 * 14 12 10 16 16 H 1.48502 * 109.47592 * 210.00228 * 14 12 10 17 17 H 1.48500 * 109.47021 * 330.00265 * 14 12 10 18 18 C 1.47442 * 108.56674 * 24.09858 * 7 6 4 19 19 C 1.54314 * 107.23555 * 359.00858 * 18 7 6 20 20 H 1.09002 * 110.70691 * 96.26844 * 19 18 7 21 21 C 1.52998 * 110.70990 * 219.33573 * 19 18 7 22 22 N 1.46905 * 109.46978 * 293.54514 * 21 19 18 23 23 H 1.08997 * 109.47030 * 299.99703 * 1 2 3 24 24 H 1.08998 * 109.47192 * 60.00319 * 1 2 3 25 25 H 1.09007 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47030 * 240.00297 * 2 1 3 27 27 H 1.08998 * 109.47192 * 119.99681 * 2 1 3 28 28 H 1.09005 * 110.36551 * 86.01132 * 6 4 3 29 29 H 1.08996 * 110.46622 * 323.72218 * 6 4 3 30 30 H 1.08997 * 109.47456 * 189.15965 * 8 7 6 31 31 H 1.08997 * 109.46833 * 309.15848 * 8 7 6 32 32 H 1.08997 * 109.47190 * 300.00464 * 9 8 7 33 33 H 1.09009 * 109.46819 * 60.00099 * 9 8 7 34 34 H 0.97003 * 119.99854 * 180.02562 * 13 12 10 35 35 H 1.09005 * 109.89076 * 239.60525 * 18 7 6 36 36 H 1.09000 * 109.89238 * 118.41992 * 18 7 6 37 37 H 1.09002 * 109.47288 * 173.54414 * 21 19 18 38 38 H 1.08995 * 109.47151 * 53.54474 * 21 19 18 39 39 H 1.00901 * 110.99869 * 180.02562 * 22 21 19 40 40 H 1.00896 * 110.99543 * 303.95346 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8909 0.5797 -0.4476 6 6 3.9680 1.6983 1.4339 7 7 5.2644 2.3827 1.2424 8 6 5.5190 3.3410 2.3263 9 6 5.7746 2.5810 3.6294 10 6 6.0352 3.5642 4.7414 11 1 6.0195 4.6249 4.5391 12 6 6.2935 3.1094 6.0171 13 7 6.5204 3.9674 6.9877 14 14 6.3199 1.2747 6.3672 15 1 7.6962 0.7528 6.1700 16 1 5.8947 1.0321 7.7692 17 1 5.3898 0.5805 5.4408 18 6 5.2494 3.0587 -0.0678 19 6 3.8860 2.7546 -0.7236 20 1 3.1823 3.5674 -0.5444 21 6 4.0510 2.5054 -2.2241 22 7 4.4805 3.7465 -2.8823 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1129 0.7478 1.9475 29 1 3.2835 2.3326 1.9970 30 1 6.3927 3.9443 2.0801 31 1 4.6519 3.9901 2.4484 32 1 4.9009 1.9777 3.8755 33 1 6.6418 1.9318 3.5072 34 1 6.7025 3.6474 7.8851 35 1 6.0554 2.6741 -0.6928 36 1 5.3638 4.1341 0.0683 37 1 3.0993 2.1812 -2.6454 38 1 4.8013 1.7311 -2.3835 39 1 4.5962 3.6080 -3.8751 40 1 3.8333 4.4976 -2.6953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405558045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:36 Heat of formation + Delta-G solvation = -51.822543 kcal Electronic energy + Delta-G solvation = -18005.898306 eV Core-core repulsion = 15241.118376 eV Total energy + Delta-G solvation = -2764.779931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55654 -37.12231 -35.17707 -33.15011 -31.84230 -30.79032 -28.81585 -28.08540 -24.92544 -23.38766 -22.78726 -21.38564 -20.27298 -19.81126 -17.15949 -16.69713 -16.15051 -15.68004 -15.06116 -14.67714 -14.65065 -14.21538 -14.00670 -13.55479 -13.20914 -12.80534 -12.65538 -12.48594 -12.39218 -12.10469 -11.58599 -11.49007 -11.24359 -11.15296 -11.06390 -10.89127 -10.53171 -10.04419 -9.71006 -9.66591 -9.47390 -9.16324 -8.84597 -8.49087 -7.80730 -6.00362 -3.98110 3.35628 3.42009 3.47495 3.49036 4.27601 4.50051 4.53403 4.72891 4.80987 4.89984 4.92916 5.06879 5.20203 5.22818 5.34397 5.36555 5.47532 5.51713 5.66284 5.74785 5.82761 5.91004 5.99729 6.07507 6.14231 6.27273 6.28862 6.44815 6.82794 6.91428 7.14841 7.21501 7.23318 7.35256 7.59229 7.65442 7.89671 8.57710 9.04038 9.62495 11.13145 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.005762 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.062415 B = 4858.349132 C = 5806.384547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.083 3.917 5 H 0.076 0.924 6 C 0.028 3.972 7 N -0.532 5.532 8 C 0.067 3.933 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.266 1.266 18 C 0.060 3.940 19 C -0.105 4.105 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.848 5.848 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.014 0.986 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.340 0.660 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 -7.056 -19.136 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.297 6.297 4 C 0.024 3.976 5 H 0.094 0.906 6 C -0.100 4.100 7 N -0.257 5.257 8 C -0.060 4.060 9 C -0.044 4.044 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.544 5.544 14 Si 0.709 3.291 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.068 4.068 19 C -0.124 4.124 20 H 0.100 0.900 21 C -0.056 4.056 22 N -0.377 5.377 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.440 -7.300 -18.463 21.573 hybrid contribution -1.344 -0.592 -0.115 1.473 sum -9.784 -7.892 -18.578 22.431 Atomic orbital electron populations 1.21741 0.93897 1.02098 1.03056 1.22505 0.95443 0.84011 1.00097 1.87897 1.20644 1.26246 1.94906 1.23306 0.80608 0.97779 0.95902 0.90646 1.23381 0.90633 1.00255 0.95738 1.63683 1.29880 1.29728 1.02434 1.22346 0.99447 0.93056 0.91167 1.19538 0.96611 0.96382 0.91902 1.21102 1.48111 0.94450 0.92200 0.91134 1.24988 0.94573 0.97663 0.96134 1.69920 1.48994 1.34138 1.01363 0.86749 0.78901 0.86254 0.77213 1.20222 1.21527 1.19034 1.22712 0.95238 0.98417 0.90413 1.22459 0.98374 0.97397 0.94214 0.90025 1.21738 0.98287 0.92383 0.93183 1.58676 1.55598 1.07607 1.15854 0.91705 0.92121 0.91225 0.93613 0.93110 0.90478 0.92408 0.91372 0.95369 0.96814 0.96191 0.92780 0.90359 0.92337 0.95493 0.90857 0.84826 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.59 6.49 37.16 0.24 0.84 16 3 O -0.38 -5.10 10.15 -35.23 -0.36 -5.46 16 4 C 0.08 1.13 2.98 -24.59 -0.07 1.05 16 5 H 0.08 0.94 7.74 -51.93 -0.40 0.53 16 6 C 0.03 0.48 5.52 -2.30 -0.01 0.46 16 7 N -0.53 -9.64 5.16 -231.26 -1.19 -10.84 16 8 C 0.07 1.42 4.50 -3.83 -0.02 1.41 16 9 C -0.01 -0.16 4.09 -27.88 -0.11 -0.28 16 10 C -0.52 -15.26 9.66 -34.44 -0.33 -15.60 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 14 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 18 C 0.06 0.91 6.28 -2.84 -0.02 0.89 16 19 C -0.10 -1.35 2.87 -88.80 -0.25 -1.60 16 20 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 21 C 0.08 0.78 6.10 -3.82 -0.02 0.76 16 22 N -0.85 -7.91 9.43 -10.37 -0.10 -8.01 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.06 7.62 -51.93 -0.40 0.67 16 30 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 31 H 0.03 0.61 7.85 -51.93 -0.41 0.20 16 32 H 0.01 0.34 6.55 -51.93 -0.34 0.00 16 33 H 0.02 0.50 7.57 -51.92 -0.39 0.11 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 35 H 0.08 1.15 7.77 -51.93 -0.40 0.75 16 36 H 0.06 0.91 7.55 -51.93 -0.39 0.52 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 39 H 0.34 2.47 9.08 -39.29 -0.36 2.11 16 40 H 0.34 2.93 8.99 -39.29 -0.35 2.58 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -31.86 319.39 -8.30 -40.15 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.25 Total: 0.43 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.32 Total: -11.12 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.52 Total: -46.54 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.86 -8.30 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405558045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.668 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds