Wall clock time and date at job start Mon Mar 30 2020 04:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46473 * 2 1 4 4 C 1.42905 * 113.99534 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.90767 * 26.13535 * 4 3 2 6 6 C 1.54909 * 110.99134 * 262.26608 * 4 3 2 7 7 N 1.47840 * 104.79737 * 204.83919 * 6 4 3 8 8 C 1.46898 * 111.00153 * 146.36676 * 7 6 4 9 9 C 1.53000 * 109.47145 * 69.15663 * 8 7 6 10 10 C 1.50703 * 109.47216 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99667 * 0.02562 * 10 9 8 12 12 C 1.37869 * 119.99867 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99894 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00401 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47103 * 89.99793 * 14 12 10 16 16 H 1.48502 * 109.47592 * 210.00228 * 14 12 10 17 17 H 1.48500 * 109.47021 * 330.00265 * 14 12 10 18 18 C 1.47442 * 108.56674 * 24.09858 * 7 6 4 19 19 C 1.54314 * 107.23555 * 359.00858 * 18 7 6 20 20 H 1.09002 * 110.70691 * 96.26844 * 19 18 7 21 21 C 1.52998 * 110.70990 * 219.33573 * 19 18 7 22 22 N 1.46905 * 109.46978 * 293.54514 * 21 19 18 23 23 H 1.08997 * 109.47030 * 299.99703 * 1 2 3 24 24 H 1.08998 * 109.47192 * 60.00319 * 1 2 3 25 25 H 1.09007 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47030 * 240.00297 * 2 1 3 27 27 H 1.08998 * 109.47192 * 119.99681 * 2 1 3 28 28 H 1.09005 * 110.36551 * 86.01132 * 6 4 3 29 29 H 1.08996 * 110.46622 * 323.72218 * 6 4 3 30 30 H 1.08997 * 109.47456 * 189.15965 * 8 7 6 31 31 H 1.08997 * 109.46833 * 309.15848 * 8 7 6 32 32 H 1.08997 * 109.47190 * 300.00464 * 9 8 7 33 33 H 1.09009 * 109.46819 * 60.00099 * 9 8 7 34 34 H 0.97003 * 119.99854 * 180.02562 * 13 12 10 35 35 H 1.09005 * 109.89076 * 239.60525 * 18 7 6 36 36 H 1.09000 * 109.89238 * 118.41992 * 18 7 6 37 37 H 1.09002 * 109.47288 * 173.54414 * 21 19 18 38 38 H 1.08995 * 109.47151 * 53.54474 * 21 19 18 39 39 H 1.00901 * 110.99869 * 180.02562 * 22 21 19 40 40 H 1.00896 * 110.99543 * 303.95346 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8909 0.5797 -0.4476 6 6 3.9680 1.6983 1.4339 7 7 5.2644 2.3827 1.2424 8 6 5.5190 3.3410 2.3263 9 6 5.7746 2.5810 3.6294 10 6 6.0352 3.5642 4.7414 11 1 6.0195 4.6249 4.5391 12 6 6.2935 3.1094 6.0171 13 7 6.5204 3.9674 6.9877 14 14 6.3199 1.2747 6.3672 15 1 7.6962 0.7528 6.1700 16 1 5.8947 1.0321 7.7692 17 1 5.3898 0.5805 5.4408 18 6 5.2494 3.0587 -0.0678 19 6 3.8860 2.7546 -0.7236 20 1 3.1823 3.5674 -0.5444 21 6 4.0510 2.5054 -2.2241 22 7 4.4805 3.7465 -2.8823 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1129 0.7478 1.9475 29 1 3.2835 2.3326 1.9970 30 1 6.3927 3.9443 2.0801 31 1 4.6519 3.9901 2.4484 32 1 4.9009 1.9777 3.8755 33 1 6.6418 1.9318 3.5072 34 1 6.7025 3.6474 7.8851 35 1 6.0554 2.6741 -0.6928 36 1 5.3638 4.1341 0.0683 37 1 3.0993 2.1812 -2.6454 38 1 4.8013 1.7311 -2.3835 39 1 4.5962 3.6080 -3.8751 40 1 3.8333 4.4976 -2.6953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405558045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:35 Heat of formation + Delta-G solvation = -76.748418 kcal Electronic energy + Delta-G solvation = -18006.979174 eV Core-core repulsion = 15241.118376 eV Total energy + Delta-G solvation = -2765.860798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73595 -38.24004 -36.32686 -35.05853 -33.22994 -32.01802 -30.24824 -29.33524 -26.59714 -24.47026 -23.77022 -22.89130 -21.61232 -21.22646 -19.03193 -18.07532 -17.13527 -16.66835 -16.42548 -15.89572 -15.80749 -15.71249 -15.41750 -14.92734 -14.56242 -14.28804 -14.07073 -13.68245 -13.60212 -13.19053 -13.11497 -12.92163 -12.57495 -12.35614 -12.20955 -11.99089 -11.93160 -11.73052 -11.62330 -11.48755 -11.37091 -10.78357 -10.51144 -9.57692 -9.27577 -8.31465 -6.36029 1.35063 1.36498 1.49341 2.35314 2.48920 3.03946 3.21863 3.37455 3.56723 3.84364 3.96418 4.15401 4.17779 4.28241 4.35063 4.40947 4.44518 4.46647 4.49254 4.66537 4.71703 4.78412 4.86691 4.91442 4.96378 5.01807 5.03454 5.22852 5.25648 5.28205 5.42811 5.59286 5.99068 6.11511 6.22663 6.25599 6.29714 6.62589 6.71051 7.28887 8.85394 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.005762 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.062415 B = 4858.349132 C = 5806.384547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.095 3.905 5 H 0.095 0.905 6 C 0.023 3.977 7 N -0.536 5.536 8 C 0.080 3.920 9 C 0.002 3.998 10 C -0.535 4.535 11 H 0.031 0.969 12 C 0.008 3.992 13 N -0.950 5.950 14 Si 0.953 3.047 15 H -0.264 1.264 16 H -0.281 1.281 17 H -0.251 1.251 18 C 0.061 3.939 19 C -0.097 4.097 20 H 0.071 0.929 21 C 0.085 3.915 22 N -0.856 5.856 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.353 0.647 40 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 -9.415 -21.022 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.036 3.964 5 H 0.113 0.887 6 C -0.105 4.105 7 N -0.261 5.261 8 C -0.048 4.048 9 C -0.035 4.035 10 C -0.574 4.574 11 H 0.050 0.950 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.776 3.224 15 H -0.189 1.189 16 H -0.207 1.207 17 H -0.175 1.175 18 C -0.066 4.066 19 C -0.117 4.117 20 H 0.089 0.911 21 C -0.047 4.047 22 N -0.387 5.387 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.167 0.833 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.968 -9.656 -20.385 24.274 hybrid contribution -1.201 0.232 0.467 1.309 sum -10.169 -9.424 -19.918 24.268 Atomic orbital electron populations 1.21758 0.92760 1.03437 1.02578 1.22763 0.96446 0.82784 1.00943 1.87894 1.20271 1.28242 1.94822 1.23168 0.81034 0.98707 0.93516 0.88719 1.23429 0.89721 0.99338 0.98044 1.63600 1.30914 1.28989 1.02623 1.22033 0.98791 0.92999 0.91005 1.19392 0.96398 0.95527 0.92221 1.21409 1.48241 0.93660 0.94065 0.95018 1.25967 0.93929 1.03269 0.95740 1.70063 1.50105 1.36808 1.02062 0.85623 0.79749 0.79492 0.77562 1.18925 1.20672 1.17466 1.22742 0.97091 0.97724 0.89042 1.22379 0.96483 0.96804 0.95999 0.91095 1.21609 0.99050 0.92916 0.91084 1.58647 1.55769 1.07356 1.16947 0.92944 0.91830 0.88995 0.91590 0.93378 0.90706 0.94656 0.91840 0.96580 0.96752 0.96018 0.92364 0.89347 0.93199 0.94489 0.90241 0.83311 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.05 0.88 6.49 71.98 0.47 1.35 16 3 O -0.39 -9.90 10.15 -148.98 -1.51 -11.41 16 4 C 0.09 2.39 2.98 31.98 0.10 2.48 16 5 H 0.09 2.04 7.74 -2.39 -0.02 2.02 16 6 C 0.02 0.76 5.52 86.77 0.48 1.24 16 7 N -0.54 -19.06 5.16 -885.57 -4.57 -23.64 16 8 C 0.08 3.44 4.50 86.30 0.39 3.83 16 9 C 0.00 0.12 4.09 29.85 0.12 0.24 16 10 C -0.54 -32.29 9.66 25.60 0.25 -32.04 16 11 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 12 C 0.01 0.48 5.47 84.65 0.46 0.94 16 13 N -0.95 -61.02 13.96 21.44 0.30 -60.72 16 14 Si 0.95 45.89 27.47 68.60 1.88 47.77 16 15 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 18 C 0.06 1.78 6.28 86.65 0.54 2.32 16 19 C -0.10 -2.33 2.87 -9.61 -0.03 -2.36 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 C 0.08 1.52 6.10 86.30 0.53 2.04 16 22 N -0.86 -13.96 9.43 -186.71 -1.76 -15.72 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.04 1.31 7.62 -2.39 -0.02 1.29 16 30 H 0.06 2.76 8.03 -2.39 -0.02 2.74 16 31 H 0.02 0.72 7.85 -2.39 -0.02 0.70 16 32 H 0.01 0.71 6.55 -2.39 -0.02 0.69 16 33 H 0.02 1.07 7.57 -2.38 -0.02 1.06 16 34 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.09 2.42 7.77 -2.38 -0.02 2.40 16 36 H 0.05 1.53 7.55 -2.39 -0.02 1.51 16 37 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 39 H 0.35 4.20 9.08 -89.69 -0.81 3.39 16 40 H 0.34 5.27 8.99 -89.70 -0.81 4.47 16 Total: -1.00 -69.13 319.39 -2.29 -71.42 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.67 Total: 13.82 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.05 Total: -21.52 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -6.03 Total: -100.07 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.51 Total: -11.41 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -69.13 -2.29 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405558045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.330 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds