Wall clock time and date at job start Mon Mar 30 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.62678 * 29.30648 * 4 3 2 6 6 C 1.54315 * 110.70652 * 266.19385 * 4 3 2 7 7 N 1.47440 * 107.23400 * 219.33533 * 6 4 3 8 8 C 1.46905 * 110.99888 * 236.74571 * 7 6 4 9 9 H 1.08999 * 109.46713 * 175.12602 * 8 7 6 10 10 C 1.52995 * 109.47366 * 55.12673 * 8 7 6 11 11 C 1.50698 * 109.46830 * 295.12356 * 8 7 6 12 12 H 1.07994 * 120.00394 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99858 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99868 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00156 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46910 * 59.99888 * 15 13 11 17 17 H 1.48497 * 109.47138 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46802 * 299.99983 * 15 13 11 19 19 C 1.47845 * 108.56768 * 359.01017 * 7 6 4 20 20 C 1.55112 * 104.90465 * 23.97452 * 19 7 6 21 21 H 1.09004 * 110.92268 * 81.16513 * 20 19 7 22 22 C 1.53003 * 111.15110 * 205.05030 * 20 19 7 23 23 N 1.46905 * 109.46460 * 287.24215 * 22 20 19 24 24 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 25 25 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 26 26 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 28 28 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 29 29 H 1.09000 * 109.89293 * 338.74516 * 6 4 3 30 30 H 1.09007 * 109.88777 * 99.76914 * 6 4 3 31 31 H 1.09003 * 109.47194 * 59.99497 * 10 8 7 32 32 H 1.08996 * 109.47694 * 180.02562 * 10 8 7 33 33 H 1.09007 * 109.46918 * 299.99889 * 10 8 7 34 34 H 0.96999 * 119.99980 * 179.97438 * 14 13 11 35 35 H 1.09000 * 110.37501 * 142.92208 * 19 7 6 36 36 H 1.08997 * 110.37273 * 265.26935 * 19 7 6 37 37 H 1.08998 * 109.46755 * 47.23501 * 22 20 19 38 38 H 1.08995 * 109.47632 * 167.24210 * 22 20 19 39 39 H 1.00900 * 110.99630 * 179.97438 * 23 22 20 40 40 H 1.00891 * 111.00163 * 303.94599 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8841 0.6036 -0.4984 6 6 3.9666 1.5989 1.4411 7 7 5.0658 2.5810 1.4056 8 6 6.3069 2.0014 1.9364 9 1 7.1210 2.7166 1.8191 10 6 6.6397 0.7196 1.1702 11 6 6.1266 1.6807 3.3978 12 1 5.1843 1.8864 3.8836 13 6 7.1648 1.1246 4.1147 14 7 8.3122 0.8736 3.5231 15 14 6.9412 0.7264 5.9261 16 1 5.8325 -0.2487 6.0852 17 1 8.1958 0.1406 6.4627 18 1 6.6172 1.9701 6.6699 19 6 5.2473 3.0342 0.0101 20 6 3.8764 2.7855 -0.6717 21 1 3.1778 3.5915 -0.4467 22 6 4.0356 2.6069 -2.1829 23 7 4.3403 3.9049 -2.7997 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.1734 1.9537 2.0992 30 1 4.3374 0.6363 1.7932 31 1 6.7700 0.9516 0.1132 32 1 7.5603 0.2893 1.5643 33 1 5.8255 0.0044 1.2875 34 1 9.0427 0.4828 4.0275 35 1 5.4976 4.0948 -0.0150 36 1 6.0241 2.4484 -0.4812 37 1 4.8494 1.9099 -2.3825 38 1 3.1094 2.2139 -2.6020 39 1 4.4506 3.8135 -3.7985 40 1 3.6319 4.5873 -2.5749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405566232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:38 Heat of formation + Delta-G solvation = -42.329754 kcal Electronic energy + Delta-G solvation = -18633.469521 eV Core-core repulsion = 15869.101228 eV Total energy + Delta-G solvation = -2764.368293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.30638 -36.89188 -35.05544 -32.99336 -31.42999 -30.14895 -27.94956 -27.28501 -25.23108 -23.59817 -22.84237 -21.49391 -20.05192 -19.05792 -16.85729 -16.09255 -15.97256 -15.30591 -15.00667 -14.55566 -14.40030 -14.19970 -13.52178 -13.16268 -12.88497 -12.55824 -12.49885 -12.01636 -11.75642 -11.51240 -11.26107 -11.24496 -10.93351 -10.82711 -10.71836 -10.55880 -10.39473 -10.14703 -10.05331 -9.74796 -9.15862 -8.84856 -8.62616 -8.35330 -7.08094 -5.97872 -4.01306 3.34786 3.38742 3.42395 3.82866 4.44316 4.53555 4.88937 5.04821 5.14700 5.18916 5.28103 5.33682 5.42516 5.46929 5.49943 5.66948 5.71392 5.81345 5.93251 6.04079 6.09302 6.17769 6.42293 6.53444 6.62853 6.67404 6.81277 6.91446 7.12827 7.14743 7.41626 7.45442 7.52555 7.73397 7.90925 8.15015 8.41566 8.62555 9.05266 9.63685 11.09304 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.007035 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.461805 B = 3979.327107 C = 4898.299864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.379 6.379 4 C 0.071 3.929 5 H 0.061 0.939 6 C 0.034 3.966 7 N -0.520 5.520 8 C 0.204 3.796 9 H 0.041 0.959 10 C -0.173 4.173 11 C -0.498 4.498 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.056 3.944 20 C -0.089 4.089 21 H 0.086 0.914 22 C 0.074 3.926 23 N -0.846 5.846 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.010 0.990 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.337 0.663 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 -0.659 -10.700 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.298 6.298 4 C 0.012 3.988 5 H 0.079 0.921 6 C -0.094 4.094 7 N -0.244 5.244 8 C 0.098 3.902 9 H 0.059 0.941 10 C -0.232 4.232 11 C -0.537 4.537 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.072 4.072 20 C -0.109 4.109 21 H 0.104 0.896 22 C -0.057 4.057 23 N -0.376 5.376 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.028 0.972 32 H 0.107 0.893 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.149 0.851 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.302 -0.171 -9.871 14.269 hybrid contribution -0.516 -1.434 -0.041 1.524 sum -10.818 -1.605 -9.912 14.759 Atomic orbital electron populations 1.21727 0.94135 1.01873 1.02874 1.22453 0.95184 0.84497 0.99994 1.87881 1.21161 1.25720 1.95039 1.23542 0.80401 0.97287 0.97551 0.92089 1.23117 0.95016 0.97207 0.94101 1.63883 1.07708 1.36341 1.16507 1.19446 0.86167 0.90854 0.93758 0.94140 1.22451 1.03288 1.01205 0.96211 1.21080 0.99023 1.39849 0.93757 0.92105 1.24930 0.95191 0.95837 0.98358 1.69877 1.03174 1.44391 1.36048 0.86587 0.77137 0.78626 0.85208 1.20442 1.21419 1.20201 1.22940 0.94129 1.00941 0.89157 1.22387 0.98514 0.96929 0.93040 0.89590 1.21746 0.98787 0.91215 0.93991 1.58646 1.53972 1.09454 1.15490 0.91801 0.92254 0.91435 0.93942 0.93184 0.91345 0.91273 0.97151 0.89280 0.95273 0.92994 0.90749 0.93584 0.91231 0.95663 0.85092 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.72 6.51 37.16 0.24 0.96 16 3 O -0.38 -6.04 10.07 -35.23 -0.35 -6.40 16 4 C 0.07 1.20 2.88 -24.91 -0.07 1.13 16 5 H 0.06 1.00 7.74 -51.93 -0.40 0.60 16 6 C 0.03 0.70 5.42 -2.84 -0.02 0.68 16 7 N -0.52 -11.60 5.16 -224.54 -1.16 -12.76 16 8 C 0.20 5.23 2.29 -68.87 -0.16 5.08 16 9 H 0.04 1.15 8.13 -51.93 -0.42 0.73 16 10 C -0.17 -4.17 8.40 37.15 0.31 -3.86 16 11 C -0.50 -13.87 7.89 -34.44 -0.27 -14.14 16 12 H 0.06 1.71 7.62 -52.49 -0.40 1.31 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 14 N -0.90 -25.69 11.32 55.43 0.63 -25.06 16 15 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.06 1.07 5.93 -2.19 -0.01 1.06 16 20 C -0.09 -1.43 2.92 -88.37 -0.26 -1.69 16 21 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 22 C 0.07 0.98 6.25 -3.82 -0.02 0.95 16 23 N -0.85 -9.84 9.57 -10.37 -0.10 -9.94 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 30 H 0.07 1.52 5.33 -51.93 -0.28 1.25 16 31 H 0.01 0.22 6.28 -51.93 -0.33 -0.11 16 32 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 33 H 0.03 0.67 6.07 -51.92 -0.31 0.36 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.05 0.91 5.67 -51.93 -0.29 0.62 16 37 H 0.07 0.96 7.97 -51.93 -0.41 0.54 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.34 3.15 9.08 -39.29 -0.36 2.80 16 40 H 0.34 3.58 8.99 -39.30 -0.35 3.22 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -29.23 311.47 -8.09 -37.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.81 Total: 5.04 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 0.03 Total: -9.49 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.63 Total: -47.76 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.35 Total: -6.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.23 -8.09 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405566232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.010 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds