Wall clock time and date at job start Mon Mar 30 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.62678 * 29.30648 * 4 3 2 6 6 C 1.54315 * 110.70652 * 266.19385 * 4 3 2 7 7 N 1.47440 * 107.23400 * 219.33533 * 6 4 3 8 8 C 1.46905 * 110.99888 * 236.74571 * 7 6 4 9 9 H 1.08999 * 109.46713 * 175.12602 * 8 7 6 10 10 C 1.52995 * 109.47366 * 55.12673 * 8 7 6 11 11 C 1.50698 * 109.46830 * 295.12356 * 8 7 6 12 12 H 1.07994 * 120.00394 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99858 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99868 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00156 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46910 * 59.99888 * 15 13 11 17 17 H 1.48497 * 109.47138 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46802 * 299.99983 * 15 13 11 19 19 C 1.47845 * 108.56768 * 359.01017 * 7 6 4 20 20 C 1.55112 * 104.90465 * 23.97452 * 19 7 6 21 21 H 1.09004 * 110.92268 * 81.16513 * 20 19 7 22 22 C 1.53003 * 111.15110 * 205.05030 * 20 19 7 23 23 N 1.46905 * 109.46460 * 287.24215 * 22 20 19 24 24 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 25 25 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 26 26 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 28 28 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 29 29 H 1.09000 * 109.89293 * 338.74516 * 6 4 3 30 30 H 1.09007 * 109.88777 * 99.76914 * 6 4 3 31 31 H 1.09003 * 109.47194 * 59.99497 * 10 8 7 32 32 H 1.08996 * 109.47694 * 180.02562 * 10 8 7 33 33 H 1.09007 * 109.46918 * 299.99889 * 10 8 7 34 34 H 0.96999 * 119.99980 * 179.97438 * 14 13 11 35 35 H 1.09000 * 110.37501 * 142.92208 * 19 7 6 36 36 H 1.08997 * 110.37273 * 265.26935 * 19 7 6 37 37 H 1.08998 * 109.46755 * 47.23501 * 22 20 19 38 38 H 1.08995 * 109.47632 * 167.24210 * 22 20 19 39 39 H 1.00900 * 110.99630 * 179.97438 * 23 22 20 40 40 H 1.00891 * 111.00163 * 303.94599 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8841 0.6036 -0.4984 6 6 3.9666 1.5989 1.4411 7 7 5.0658 2.5810 1.4056 8 6 6.3069 2.0014 1.9364 9 1 7.1210 2.7166 1.8191 10 6 6.6397 0.7196 1.1702 11 6 6.1266 1.6807 3.3978 12 1 5.1843 1.8864 3.8836 13 6 7.1648 1.1246 4.1147 14 7 8.3122 0.8736 3.5231 15 14 6.9412 0.7264 5.9261 16 1 5.8325 -0.2487 6.0852 17 1 8.1958 0.1406 6.4627 18 1 6.6172 1.9701 6.6699 19 6 5.2473 3.0342 0.0101 20 6 3.8764 2.7855 -0.6717 21 1 3.1778 3.5915 -0.4467 22 6 4.0356 2.6069 -2.1829 23 7 4.3403 3.9049 -2.7997 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.1734 1.9537 2.0992 30 1 4.3374 0.6363 1.7932 31 1 6.7700 0.9516 0.1132 32 1 7.5603 0.2893 1.5643 33 1 5.8255 0.0044 1.2875 34 1 9.0427 0.4828 4.0275 35 1 5.4976 4.0948 -0.0150 36 1 6.0241 2.4484 -0.4812 37 1 4.8494 1.9099 -2.3825 38 1 3.1094 2.2139 -2.6020 39 1 4.4506 3.8135 -3.7985 40 1 3.6319 4.5873 -2.5749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405566232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:38 Heat of formation + Delta-G solvation = -64.468397 kcal Electronic energy + Delta-G solvation = -18634.429524 eV Core-core repulsion = 15869.101228 eV Total energy + Delta-G solvation = -2765.328296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79476 -38.28023 -36.40214 -34.76362 -32.75941 -31.54387 -29.51198 -28.88718 -27.31627 -24.97655 -23.91228 -23.04033 -21.40116 -20.88065 -18.22293 -18.03472 -17.36687 -16.60947 -16.50790 -16.00690 -15.67368 -15.45386 -15.02882 -14.91012 -14.29888 -13.82794 -13.70304 -13.58448 -13.34341 -12.99730 -12.90541 -12.67633 -12.54692 -12.38842 -12.23192 -12.19992 -12.08868 -11.89723 -11.65183 -11.46646 -10.92223 -10.50157 -10.46421 -9.55575 -8.85372 -8.11732 -6.22825 1.41413 1.43265 1.51084 2.42242 2.64586 3.16818 3.31737 3.50617 3.75808 3.99294 4.00716 4.17054 4.22166 4.32744 4.47582 4.49455 4.50612 4.65144 4.71026 4.72567 4.82931 4.89055 4.91007 5.03073 5.04131 5.12398 5.17242 5.26338 5.30256 5.46450 5.66977 5.83504 6.16681 6.24211 6.29288 6.46091 6.65996 6.69566 6.89949 7.46412 8.94291 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.007035 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.461805 B = 3979.327107 C = 4898.299864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.387 6.387 4 C 0.084 3.916 5 H 0.069 0.931 6 C 0.037 3.963 7 N -0.536 5.536 8 C 0.210 3.790 9 H 0.005 0.995 10 C -0.156 4.156 11 C -0.517 4.517 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.958 3.042 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.274 1.274 19 C 0.058 3.942 20 C -0.077 4.077 21 H 0.084 0.916 22 C 0.083 3.917 23 N -0.854 5.854 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.352 0.648 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -1.144 -11.640 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.025 3.975 5 H 0.087 0.913 6 C -0.091 4.091 7 N -0.261 5.261 8 C 0.103 3.897 9 H 0.023 0.977 10 C -0.215 4.215 11 C -0.556 4.556 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.559 5.559 15 Si 0.784 3.216 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.200 1.200 19 C -0.070 4.070 20 C -0.096 4.096 21 H 0.103 0.897 22 C -0.048 4.048 23 N -0.385 5.385 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.166 0.834 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.731 -0.650 -10.834 15.982 hybrid contribution -0.101 -1.251 0.243 1.278 sum -11.832 -1.901 -10.591 15.993 Atomic orbital electron populations 1.21731 0.92101 1.03431 1.02822 1.22735 0.96872 0.83135 1.00388 1.87878 1.20081 1.27728 1.94911 1.23285 0.81257 0.98052 0.94953 0.91259 1.23028 0.94028 0.95462 0.96598 1.63720 1.06758 1.36771 1.18809 1.19180 0.86576 0.90510 0.93438 0.97735 1.22217 1.01938 1.00392 0.96957 1.21308 0.98785 1.40326 0.95159 0.93128 1.25683 0.94856 0.95580 1.02490 1.70000 1.03722 1.44663 1.37518 0.85606 0.77387 0.78469 0.80135 1.19683 1.20701 1.19961 1.22932 0.96008 1.00387 0.87639 1.22285 0.96159 0.96307 0.94852 0.89749 1.21576 0.99438 0.92015 0.91752 1.58583 1.54391 1.08843 1.16722 0.92530 0.91607 0.89101 0.92341 0.94011 0.92472 0.93261 0.95263 0.91906 0.94810 0.92878 0.91083 0.94230 0.91531 0.94126 0.83374 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 10.28 71.98 0.74 -1.92 16 2 C 0.04 1.08 6.51 71.98 0.47 1.55 16 3 O -0.39 -11.66 10.07 -148.98 -1.50 -13.16 16 4 C 0.08 2.73 2.88 31.78 0.09 2.82 16 5 H 0.07 2.15 7.74 -2.39 -0.02 2.13 16 6 C 0.04 1.54 5.42 86.65 0.47 2.01 16 7 N -0.54 -24.30 5.16 -864.33 -4.46 -28.75 16 8 C 0.21 11.07 2.29 44.17 0.10 11.17 16 9 H 0.00 0.28 8.13 -2.39 -0.02 0.26 16 10 C -0.16 -7.64 8.40 71.98 0.60 -7.04 16 11 C -0.52 -29.44 7.89 25.60 0.20 -29.24 16 12 H 0.05 2.91 7.62 -2.91 -0.02 2.89 16 13 C 0.01 0.71 5.30 84.66 0.45 1.15 16 14 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 15 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 19 C 0.06 2.19 5.93 86.85 0.51 2.70 16 20 C -0.08 -2.33 2.92 -9.33 -0.03 -2.36 16 21 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 22 C 0.08 2.00 6.25 86.30 0.54 2.54 16 23 N -0.85 -17.77 9.57 -186.71 -1.79 -19.56 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16 30 H 0.05 2.20 5.33 -2.38 -0.01 2.19 16 31 H 0.03 1.27 6.28 -2.39 -0.01 1.26 16 32 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 33 H 0.03 1.58 6.07 -2.38 -0.01 1.56 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.04 1.55 5.67 -2.39 -0.01 1.53 16 37 H 0.07 1.66 7.97 -2.39 -0.02 1.64 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.35 5.63 9.08 -89.69 -0.81 4.81 16 40 H 0.35 6.46 8.99 -89.70 -0.81 5.65 16 Total: -1.00 -62.94 311.47 -1.92 -64.85 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.59 Total: 19.95 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.15 Total: -16.62 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -6.00 Total: -101.62 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.50 Total: -13.16 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.94 -1.92 -64.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405566232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.385 kcal (2) G-P(sol) polarization free energy of solvation -62.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds