Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47724 * 2 1 4 4 C 1.42893 * 114.00409 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.87878 * 32.38838 * 4 3 2 6 6 C 1.54909 * 110.98757 * 268.54665 * 4 3 2 7 7 N 1.47846 * 104.79344 * 204.79928 * 6 4 3 8 8 C 1.46903 * 110.99957 * 146.35885 * 7 6 4 9 9 H 1.08997 * 109.47656 * 299.12223 * 8 7 6 10 10 C 1.53004 * 109.46875 * 59.12372 * 8 7 6 11 11 C 1.50705 * 109.47273 * 179.11860 * 8 7 6 12 12 H 1.07998 * 119.99682 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00093 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00166 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 119.99909 * 0.02562 * 13 11 8 16 16 H 1.48505 * 109.46963 * 89.99880 * 15 13 11 17 17 H 1.48502 * 109.47039 * 209.99807 * 15 13 11 18 18 H 1.48500 * 109.47451 * 329.99759 * 15 13 11 19 19 C 1.47444 * 108.57078 * 24.09469 * 7 6 4 20 20 C 1.54318 * 107.22952 * 359.00884 * 19 7 6 21 21 H 1.09004 * 110.70750 * 96.09992 * 20 19 7 22 22 C 1.52997 * 110.70553 * 219.33358 * 20 19 7 23 23 N 1.46900 * 109.47142 * 293.54766 * 22 20 19 24 24 H 1.09007 * 109.46676 * 300.00214 * 1 2 3 25 25 H 1.09002 * 109.46826 * 59.99817 * 1 2 3 26 26 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46807 * 239.99287 * 2 1 3 28 28 H 1.09002 * 109.46826 * 120.00183 * 2 1 3 29 29 H 1.08989 * 110.37822 * 85.96976 * 6 4 3 30 30 H 1.09000 * 110.46402 * 323.67006 * 6 4 3 31 31 H 1.08998 * 109.47363 * 65.59754 * 10 8 7 32 32 H 1.08998 * 109.47014 * 185.60214 * 10 8 7 33 33 H 1.08998 * 109.46723 * 305.59380 * 10 8 7 34 34 H 0.96992 * 120.00444 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.89316 * 118.41179 * 19 7 6 36 36 H 1.09001 * 109.89098 * 239.60870 * 19 7 6 37 37 H 1.08995 * 109.47175 * 53.55007 * 22 20 19 38 38 H 1.09009 * 109.47481 * 173.54775 * 22 20 19 39 39 H 1.00910 * 110.99862 * 180.02562 * 23 22 20 40 40 H 1.00896 * 111.00343 * 303.94933 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8858 0.6334 -0.5464 6 6 3.9817 1.5401 1.4451 7 7 5.2772 2.2411 1.3171 8 6 5.5429 3.0755 2.4966 9 1 4.7607 3.8285 2.5927 10 6 5.5618 2.1970 3.7491 11 6 6.8785 3.7558 2.3401 12 1 7.4705 3.5856 1.4530 13 6 7.3447 4.5954 3.3294 14 7 8.5100 5.1895 3.1926 15 14 6.3211 4.8892 4.8641 16 1 6.6762 3.8822 5.8962 17 1 6.5936 6.2519 5.3875 18 1 4.8796 4.7670 4.5286 19 6 5.2508 3.0559 0.0886 20 6 3.8810 2.8254 -0.5836 21 1 3.1790 3.6123 -0.3078 22 6 4.0317 2.7413 -2.1038 23 7 4.4566 4.0466 -2.6267 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1302 0.5394 1.8506 30 1 3.3033 2.1095 2.0803 31 1 6.4058 1.5092 3.6978 32 1 5.6595 2.8268 4.6333 33 1 4.6333 1.6291 3.8085 34 1 8.8382 5.7798 3.8887 35 1 5.3677 4.1100 0.3401 36 1 6.0505 2.7416 -0.5821 37 1 4.7796 1.9888 -2.3537 38 1 3.0757 2.4652 -2.5490 39 1 4.5629 4.0171 -3.6297 40 1 3.8121 4.7730 -2.3530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405566237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = -37.760665 kcal Electronic energy + Delta-G solvation = -18542.219577 eV Core-core repulsion = 15778.049415 eV Total energy + Delta-G solvation = -2764.170162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.34029 -37.00808 -35.08134 -33.01866 -31.58761 -30.68912 -28.36697 -27.78619 -24.82714 -23.59716 -22.96362 -21.38252 -20.14945 -19.30230 -16.90013 -16.60674 -15.95605 -15.55184 -15.05063 -14.62997 -14.38576 -14.20086 -13.59078 -13.27655 -13.02395 -12.62502 -12.53390 -12.34957 -12.11029 -12.03744 -11.69711 -11.34606 -11.04471 -10.92375 -10.79767 -10.50125 -10.42679 -10.12793 -10.07997 -9.46580 -9.30827 -9.02563 -8.53387 -8.51759 -7.31876 -6.01673 -3.99380 3.29990 3.39669 3.41619 3.65247 4.44146 4.55876 4.84841 4.93333 5.02059 5.07115 5.18691 5.20920 5.30018 5.31524 5.42640 5.58776 5.61421 5.75044 5.80230 5.95415 6.05668 6.11315 6.21379 6.24451 6.36273 6.47604 6.59387 6.71690 6.86281 6.93163 7.20446 7.30447 7.34906 7.52036 7.64304 7.98529 8.07829 8.69824 9.07118 9.60639 11.11504 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.007034 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.424918 B = 3979.553556 C = 4815.723057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.083 3.917 5 H 0.073 0.927 6 C 0.022 3.978 7 N -0.513 5.513 8 C 0.178 3.822 9 H -0.002 1.002 10 C -0.146 4.146 11 C -0.502 4.502 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.884 3.116 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.270 1.270 19 C 0.075 3.925 20 C -0.105 4.105 21 H 0.078 0.922 22 C 0.078 3.922 23 N -0.845 5.845 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.338 0.662 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 -8.295 -8.323 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.299 6.299 4 C 0.024 3.976 5 H 0.091 0.909 6 C -0.106 4.106 7 N -0.239 5.239 8 C 0.070 3.930 9 H 0.016 0.984 10 C -0.203 4.203 11 C -0.540 4.540 12 H 0.101 0.899 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.715 3.285 16 H -0.206 1.206 17 H -0.225 1.225 18 H -0.195 1.195 19 C -0.053 4.053 20 C -0.125 4.125 21 H 0.096 0.904 22 C -0.053 4.053 23 N -0.374 5.374 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.150 0.850 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.919 -8.478 -7.811 17.314 hybrid contribution -1.855 0.517 0.590 2.015 sum -14.774 -7.960 -7.221 18.270 Atomic orbital electron populations 1.21738 0.94101 1.01948 1.02955 1.22455 0.95224 0.84331 1.00015 1.87888 1.21133 1.25939 1.94972 1.23331 0.80025 0.97826 0.96401 0.90860 1.23405 0.91844 0.99800 0.95598 1.63580 1.27071 1.29523 1.03707 1.19900 0.97192 0.89645 0.86224 0.98440 1.22183 0.99825 0.99906 0.98393 1.20956 1.01579 1.25008 1.06445 0.89920 1.24897 0.94772 0.95454 0.97975 1.69879 1.18740 1.30770 1.34376 0.86915 0.81199 0.76305 0.84087 1.20603 1.22482 1.19545 1.22551 0.93314 0.98703 0.90717 1.22522 0.99238 0.96171 0.94609 0.90404 1.21715 0.97882 0.91721 0.94006 1.58618 1.56162 1.05990 1.16650 0.91898 0.92114 0.91336 0.93640 0.93330 0.91223 0.93498 0.92035 0.94260 0.95268 0.92690 0.90909 0.90849 0.90952 0.95916 0.85033 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.64 6.54 37.16 0.24 0.88 16 3 O -0.38 -5.56 10.15 -35.23 -0.36 -5.91 16 4 C 0.08 1.27 2.93 -24.59 -0.07 1.20 16 5 H 0.07 1.04 7.80 -51.93 -0.41 0.64 16 6 C 0.02 0.40 5.05 -2.30 -0.01 0.39 16 7 N -0.51 -10.97 5.02 -224.67 -1.13 -12.10 16 8 C 0.18 4.36 1.24 -68.86 -0.09 4.28 16 9 H 0.00 -0.05 7.16 -51.93 -0.37 -0.42 16 10 C -0.15 -3.31 8.58 37.16 0.32 -2.99 16 11 C -0.50 -14.31 8.27 -34.44 -0.28 -14.60 16 12 H 0.08 2.58 7.68 -52.49 -0.40 2.17 16 13 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 14 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 15 Si 0.88 22.41 24.31 -169.99 -4.13 18.28 16 16 H -0.28 -6.89 6.92 56.52 0.39 -6.50 16 17 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 18 H -0.27 -6.65 6.53 56.52 0.37 -6.28 16 19 C 0.07 1.49 5.47 -2.84 -0.02 1.47 16 20 C -0.11 -1.68 2.87 -88.80 -0.25 -1.94 16 21 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 22 C 0.08 1.03 6.10 -3.83 -0.02 1.01 16 23 N -0.85 -10.66 9.43 -10.37 -0.10 -10.75 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.17 8.09 -51.94 -0.42 0.75 16 30 H 0.05 0.89 7.60 -51.93 -0.39 0.50 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.04 0.92 3.43 -51.93 -0.18 0.74 16 33 H 0.03 0.57 6.83 -51.93 -0.35 0.22 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 1.65 7.05 -51.93 -0.37 1.28 16 36 H 0.07 1.49 7.77 -51.93 -0.40 1.09 16 37 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 38 H 0.02 0.28 8.14 -51.92 -0.42 -0.14 16 39 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 40 H 0.34 4.01 8.99 -39.29 -0.35 3.65 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -31.14 309.19 -7.17 -38.31 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.98 Total: 3.89 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 0.10 Total: -9.34 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.45 Total: -49.88 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.36 Total: -5.91 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.13 Total: 18.28 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.14 -7.17 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405566237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.553 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds