Wall clock time and date at job start Mon Mar 30 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47724 * 2 1 4 4 C 1.42893 * 114.00409 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.87878 * 32.38838 * 4 3 2 6 6 C 1.54909 * 110.98757 * 268.54665 * 4 3 2 7 7 N 1.47846 * 104.79344 * 204.79928 * 6 4 3 8 8 C 1.46903 * 110.99957 * 146.35885 * 7 6 4 9 9 H 1.08997 * 109.47656 * 299.12223 * 8 7 6 10 10 C 1.53004 * 109.46875 * 59.12372 * 8 7 6 11 11 C 1.50705 * 109.47273 * 179.11860 * 8 7 6 12 12 H 1.07998 * 119.99682 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00093 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00166 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 119.99909 * 0.02562 * 13 11 8 16 16 H 1.48505 * 109.46963 * 89.99880 * 15 13 11 17 17 H 1.48502 * 109.47039 * 209.99807 * 15 13 11 18 18 H 1.48500 * 109.47451 * 329.99759 * 15 13 11 19 19 C 1.47444 * 108.57078 * 24.09469 * 7 6 4 20 20 C 1.54318 * 107.22952 * 359.00884 * 19 7 6 21 21 H 1.09004 * 110.70750 * 96.09992 * 20 19 7 22 22 C 1.52997 * 110.70553 * 219.33358 * 20 19 7 23 23 N 1.46900 * 109.47142 * 293.54766 * 22 20 19 24 24 H 1.09007 * 109.46676 * 300.00214 * 1 2 3 25 25 H 1.09002 * 109.46826 * 59.99817 * 1 2 3 26 26 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46807 * 239.99287 * 2 1 3 28 28 H 1.09002 * 109.46826 * 120.00183 * 2 1 3 29 29 H 1.08989 * 110.37822 * 85.96976 * 6 4 3 30 30 H 1.09000 * 110.46402 * 323.67006 * 6 4 3 31 31 H 1.08998 * 109.47363 * 65.59754 * 10 8 7 32 32 H 1.08998 * 109.47014 * 185.60214 * 10 8 7 33 33 H 1.08998 * 109.46723 * 305.59380 * 10 8 7 34 34 H 0.96992 * 120.00444 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.89316 * 118.41179 * 19 7 6 36 36 H 1.09001 * 109.89098 * 239.60870 * 19 7 6 37 37 H 1.08995 * 109.47175 * 53.55007 * 22 20 19 38 38 H 1.09009 * 109.47481 * 173.54775 * 22 20 19 39 39 H 1.00910 * 110.99862 * 180.02562 * 23 22 20 40 40 H 1.00896 * 111.00343 * 303.94933 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8858 0.6334 -0.5464 6 6 3.9817 1.5401 1.4451 7 7 5.2772 2.2411 1.3171 8 6 5.5429 3.0755 2.4966 9 1 4.7607 3.8285 2.5927 10 6 5.5618 2.1970 3.7491 11 6 6.8785 3.7558 2.3401 12 1 7.4705 3.5856 1.4530 13 6 7.3447 4.5954 3.3294 14 7 8.5100 5.1895 3.1926 15 14 6.3211 4.8892 4.8641 16 1 6.6762 3.8822 5.8962 17 1 6.5936 6.2519 5.3875 18 1 4.8796 4.7670 4.5286 19 6 5.2508 3.0559 0.0886 20 6 3.8810 2.8254 -0.5836 21 1 3.1790 3.6123 -0.3078 22 6 4.0317 2.7413 -2.1038 23 7 4.4566 4.0466 -2.6267 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1302 0.5394 1.8506 30 1 3.3033 2.1095 2.0803 31 1 6.4058 1.5092 3.6978 32 1 5.6595 2.8268 4.6333 33 1 4.6333 1.6291 3.8085 34 1 8.8382 5.7798 3.8887 35 1 5.3677 4.1100 0.3401 36 1 6.0505 2.7416 -0.5821 37 1 4.7796 1.9888 -2.3537 38 1 3.0757 2.4652 -2.5490 39 1 4.5629 4.0171 -3.6297 40 1 3.8121 4.7730 -2.3530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405566237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:40 Heat of formation + Delta-G solvation = -63.338642 kcal Electronic energy + Delta-G solvation = -18543.328722 eV Core-core repulsion = 15778.049415 eV Total energy + Delta-G solvation = -2765.279306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72516 -38.29486 -36.45563 -34.79926 -33.14394 -31.90547 -29.85190 -29.26164 -26.86507 -24.92776 -23.88370 -22.85873 -21.55291 -21.00406 -18.73868 -18.11019 -17.25302 -16.82315 -16.40531 -16.05224 -15.77131 -15.49898 -15.04352 -14.93198 -14.42160 -14.19521 -14.00074 -13.72695 -13.56698 -13.31313 -13.02614 -12.71495 -12.50974 -12.39504 -12.26412 -12.03366 -11.94655 -11.85638 -11.53230 -11.41091 -11.13002 -10.73897 -10.46710 -9.53659 -9.03974 -8.28575 -6.31003 1.27866 1.32966 1.42719 2.30507 2.55656 3.04605 3.36210 3.43914 3.63684 3.88158 4.02877 4.19797 4.24061 4.33502 4.41995 4.49799 4.50502 4.53210 4.60770 4.67294 4.72606 4.76851 4.82490 4.90352 4.93373 4.99432 5.05922 5.21155 5.27124 5.31806 5.41972 5.63945 6.01099 6.22941 6.27631 6.32432 6.63213 6.65618 6.75199 7.33052 8.88412 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.007034 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.424918 B = 3979.553556 C = 4815.723057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.392 6.392 4 C 0.098 3.902 5 H 0.091 0.909 6 C 0.020 3.980 7 N -0.527 5.527 8 C 0.183 3.817 9 H -0.015 1.015 10 C -0.141 4.141 11 C -0.504 4.504 12 H 0.039 0.961 13 C 0.014 3.986 14 N -0.946 5.946 15 Si 0.947 3.053 16 H -0.263 1.263 17 H -0.296 1.296 18 H -0.257 1.257 19 C 0.081 3.919 20 C -0.097 4.097 21 H 0.068 0.932 22 C 0.086 3.914 23 N -0.860 5.860 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.266 0.734 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.353 0.647 40 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.415 -9.974 -8.262 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.039 3.961 5 H 0.109 0.891 6 C -0.108 4.108 7 N -0.252 5.252 8 C 0.075 3.925 9 H 0.002 0.998 10 C -0.198 4.198 11 C -0.542 4.542 12 H 0.057 0.943 13 C -0.183 4.183 14 N -0.587 5.587 15 Si 0.774 3.226 16 H -0.188 1.188 17 H -0.223 1.223 18 H -0.182 1.182 19 C -0.047 4.047 20 C -0.117 4.117 21 H 0.087 0.913 22 C -0.045 4.045 23 N -0.392 5.392 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.167 0.833 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.364 -10.182 -7.771 20.003 hybrid contribution -1.081 1.010 0.465 1.551 sum -16.445 -9.171 -7.307 20.197 Atomic orbital electron populations 1.21753 0.92667 1.03423 1.02573 1.22754 0.96424 0.82800 1.01011 1.87883 1.20055 1.28286 1.94918 1.23097 0.80944 0.97639 0.94459 0.89093 1.23502 0.89962 0.99695 0.97637 1.63476 1.29699 1.29090 1.02922 1.19699 0.94218 0.90037 0.88592 0.99776 1.22075 1.01371 0.99587 0.96784 1.21145 1.02894 1.25351 1.04812 0.94267 1.25725 0.95884 0.95202 1.01480 1.70026 1.20810 1.32005 1.35832 0.85892 0.80046 0.76521 0.80151 1.18832 1.22328 1.18173 1.22374 0.95689 0.96130 0.90529 1.22393 0.96248 0.96651 0.96365 0.91336 1.21603 0.98948 0.92062 0.91854 1.58588 1.56583 1.05985 1.18014 0.92684 0.92103 0.88950 0.92020 0.92934 0.89580 0.94409 0.92542 0.94683 0.91981 0.92495 0.94733 0.91916 0.90726 0.93943 0.83323 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.88 6.54 71.98 0.47 1.35 16 3 O -0.39 -10.37 10.15 -148.98 -1.51 -11.88 16 4 C 0.10 2.77 2.93 31.98 0.09 2.87 16 5 H 0.09 2.29 7.80 -2.39 -0.02 2.27 16 6 C 0.02 0.69 5.05 86.77 0.44 1.13 16 7 N -0.53 -22.47 5.02 -864.73 -4.34 -26.81 16 8 C 0.18 8.98 1.24 44.17 0.05 9.04 16 9 H -0.02 -0.78 7.16 -2.39 -0.02 -0.80 16 10 C -0.14 -6.16 8.58 71.98 0.62 -5.54 16 11 C -0.50 -29.73 8.27 25.60 0.21 -29.52 16 12 H 0.04 2.59 7.68 -2.91 -0.02 2.57 16 13 C 0.01 0.86 5.45 84.65 0.46 1.32 16 14 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 15 Si 0.95 46.23 24.31 68.60 1.67 47.90 16 16 H -0.26 -12.08 6.92 99.48 0.69 -11.39 16 17 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 18 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 19 C 0.08 3.28 5.47 86.65 0.47 3.75 16 20 C -0.10 -3.00 2.87 -9.61 -0.03 -3.03 16 21 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 22 C 0.09 2.14 6.10 86.30 0.53 2.67 16 23 N -0.86 -20.93 9.43 -186.72 -1.76 -22.69 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.00 8.11 -2.39 -0.02 0.98 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 30 H 0.04 1.36 7.60 -2.39 -0.02 1.35 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.03 1.55 3.43 -2.39 -0.01 1.54 16 33 H 0.06 2.28 6.83 -2.39 -0.02 2.27 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.03 1.64 7.05 -2.39 -0.02 1.62 16 36 H 0.06 2.64 7.77 -2.39 -0.02 2.62 16 37 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 38 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.35 6.65 9.08 -89.69 -0.81 5.84 16 40 H 0.34 7.88 8.99 -89.70 -0.81 7.07 16 Total: -1.00 -68.80 309.19 -2.26 -71.07 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -0.68 Total: 19.96 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.06 Total: -17.48 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -5.80 Total: -109.57 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.51 Total: -11.88 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -68.80 -2.26 -71.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405566237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.729 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds