Wall clock time and date at job start Mon Mar 30 2020 04:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 S 1.76201 * 120.35557 * 180.02562 * 6 5 4 8 8 O 1.42093 * 106.40174 * 203.54237 * 7 6 5 9 9 O 1.42098 * 106.40111 * 336.46054 * 7 6 5 10 10 C 1.76197 * 107.21819 * 89.99930 * 7 6 5 11 11 H 1.08001 * 119.99816 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00167 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99895 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 120.00210 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.46784 * 59.99653 * 14 12 10 16 16 H 1.48499 * 109.46893 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46957 * 299.99921 * 14 12 10 18 18 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 19 19 N 1.31967 * 120.83264 * 0.02562 * 18 6 5 20 20 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 22 22 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 23 23 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 24 24 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 25 25 H 0.96999 * 119.99972 * 180.02562 * 13 12 10 26 26 H 1.07994 * 119.58392 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 16 3.9829 5.2517 0.0016 8 8 3.0132 6.1359 0.5466 9 8 5.2865 5.0971 0.5455 10 6 4.1990 5.7264 -1.6814 11 1 3.8935 5.0595 -2.4740 12 6 4.7582 6.9492 -1.9865 13 7 5.1298 7.7615 -1.0212 14 14 4.9880 7.4522 -3.7708 15 1 3.6681 7.4816 -4.4506 16 1 5.6046 8.8019 -3.8291 17 1 5.8734 6.4731 -4.4509 18 6 1.8772 3.5097 0.0021 19 7 1.3187 2.3141 0.0026 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 4.0229 0.3694 -0.0035 24 1 5.1255 2.5946 0.0011 25 1 5.5229 8.6219 -1.2358 26 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584591443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:00 Heat of formation + Delta-G solvation = -117.489239 kcal Electronic energy + Delta-G solvation = -15188.936809 eV Core-core repulsion = 12358.844282 eV Total energy + Delta-G solvation = -2830.092527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.040 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72140 -39.01186 -37.39070 -36.11580 -35.17341 -33.70309 -32.00455 -28.36727 -28.21625 -24.94652 -24.27154 -20.83107 -19.61915 -19.21605 -18.33399 -18.12307 -17.15578 -16.91464 -15.87055 -15.85169 -15.70874 -15.25192 -14.60861 -14.56956 -14.12704 -13.94305 -13.29928 -12.97041 -12.84199 -12.46694 -12.38538 -12.36881 -12.28363 -11.83494 -11.21858 -11.21242 -10.95564 -10.76359 -9.92302 -8.75004 -7.49094 -0.36973 0.03463 0.14971 1.38130 1.39868 1.53147 1.92487 2.22666 2.41684 2.59567 3.11512 3.42725 3.67987 3.78311 3.89284 3.94851 4.39093 4.39843 4.49187 4.59130 4.69703 4.74719 4.99199 5.22082 5.27108 5.88041 5.97723 6.50174 6.77695 8.22139 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.038261 B = 0.007036 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.641946 B = 3978.622601 C = 4192.292518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.344 3.656 4 C -0.201 4.201 5 C 0.039 3.961 6 C -0.744 4.744 7 S 2.613 3.387 8 O -1.019 7.019 9 O -1.017 7.017 10 C -1.023 5.023 11 H 0.120 0.880 12 C 0.073 3.927 13 N -0.888 5.888 14 Si 0.990 3.010 15 H -0.251 1.251 16 H -0.263 1.263 17 H -0.250 1.250 18 C 0.225 3.775 19 N -0.558 5.558 20 H 0.133 0.867 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.184 0.816 24 H 0.169 0.831 25 H 0.301 0.699 26 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -12.718 -2.242 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.165 3.835 4 C -0.221 4.221 5 C 0.014 3.986 6 C -0.833 4.833 7 S 2.798 3.202 8 O -1.016 7.016 9 O -1.014 7.014 10 C -1.157 5.157 11 H 0.139 0.861 12 C -0.141 4.141 13 N -0.519 5.519 14 Si 0.808 3.192 15 H -0.175 1.175 16 H -0.187 1.187 17 H -0.173 1.173 18 C 0.068 3.932 19 N -0.283 5.283 20 H 0.151 0.849 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.201 0.799 24 H 0.186 0.814 25 H 0.111 0.889 26 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.192 -12.522 -1.372 14.037 hybrid contribution 0.511 0.284 -1.010 1.167 sum -5.682 -12.238 -2.382 13.701 Atomic orbital electron populations 1.23216 0.75306 1.05312 1.02613 1.86263 1.24894 1.23212 1.86662 1.20400 0.90263 0.85133 0.87728 1.21445 0.91992 1.00066 1.08629 1.21483 1.01504 0.89955 0.85682 1.31667 1.05826 1.23858 1.21947 1.00273 0.71963 0.71040 0.76878 1.93284 1.63453 1.63446 1.81427 1.93283 1.40289 1.86421 1.81421 1.30475 1.55904 1.12614 1.16661 0.86141 1.25997 0.88808 0.93637 1.05614 1.69976 1.34499 1.10881 1.36562 0.85160 0.80306 0.78591 0.75149 1.17472 1.18665 1.17319 1.22339 0.90901 0.94759 0.85191 1.67446 1.40687 0.98736 1.21393 0.84878 0.92316 0.92284 0.79862 0.81363 0.88895 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.38 113.37 1.18 1.73 15 2 O -0.30 -7.65 10.48 -89.90 -0.94 -8.59 15 3 C 0.34 10.53 7.49 84.79 0.63 11.16 15 4 C -0.20 -5.79 10.04 22.47 0.23 -5.56 15 5 C 0.04 1.36 9.64 22.45 0.22 1.58 15 6 C -0.74 -30.77 5.83 22.36 0.13 -30.64 15 7 S 2.61 137.19 4.66 -56.49 -0.26 136.93 15 8 O -1.02 -58.73 17.18 -128.00 -2.20 -60.93 15 9 O -1.02 -58.21 17.24 -128.00 -2.21 -60.41 15 10 C -1.02 -54.72 9.58 67.73 0.65 -54.07 15 11 H 0.12 5.80 7.81 -2.91 -0.02 5.78 15 12 C 0.07 3.93 5.46 84.65 0.46 4.39 15 13 N -0.89 -51.47 13.19 21.45 0.28 -51.18 15 14 Si 0.99 39.96 29.54 68.60 2.03 41.99 15 15 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 17 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 18 C 0.23 8.60 10.68 84.63 0.90 9.50 15 19 N -0.56 -19.04 9.22 -308.95 -2.85 -21.89 15 20 H 0.13 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.06 1.13 8.10 -2.39 -0.02 1.11 15 22 H 0.06 1.14 8.11 -2.38 -0.02 1.12 15 23 H 0.18 3.80 8.06 -2.91 -0.02 3.77 15 24 H 0.17 5.41 7.71 -2.91 -0.02 5.39 15 25 H 0.30 15.62 8.31 -92.71 -0.77 14.85 15 26 H 0.18 6.56 7.62 -2.91 -0.02 6.54 15 Total: -1.00 -72.27 255.78 -0.55 -72.82 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.20 Total: 13.18 kcal Atomic # 6 Polarization: -66.31 SS G_CDS: 4.40 Total: -61.91 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.56 Total: -73.07 kcal Atomic # 8 Polarization: -124.59 SS G_CDS: -5.35 Total: -129.94 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 16 Polarization: 137.19 SS G_CDS: -0.26 Total: 136.93 kcal Total: -72.27 -0.55 -72.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584591443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.668 kcal (2) G-P(sol) polarization free energy of solvation -72.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds