Wall clock time and date at job start Mon Mar 30 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47620 * 2 1 4 4 C 1.46901 * 110.99646 * 66.04478 * 3 2 1 5 5 C 1.46894 * 111.00052 * 190.00171 * 3 2 1 6 6 C 1.52991 * 109.47328 * 76.00501 * 5 3 2 7 7 H 1.09004 * 109.47117 * 300.51239 * 6 5 3 8 8 O 1.42903 * 109.47633 * 60.51409 * 6 5 3 9 9 C 1.53004 * 109.47503 * 180.51749 * 6 5 3 10 10 N 1.46901 * 109.47442 * 179.97438 * 9 6 5 11 11 C 1.47483 * 110.99784 * 265.96917 * 10 9 6 12 12 C 1.53511 * 87.93154 * 221.29662 * 11 10 9 13 13 C 1.50697 * 114.34462 * 139.68263 * 12 11 10 14 14 H 1.07999 * 119.99863 * 266.07944 * 13 12 11 15 15 C 1.37873 * 119.99709 * 86.07396 * 13 12 11 16 16 N 1.31518 * 120.00513 * 0.02562 * 15 13 12 17 17 Si 1.86811 * 119.99977 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46995 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46835 * 120.00202 * 17 15 13 20 20 H 1.48499 * 109.47346 * 240.00262 * 17 15 13 21 21 C 1.47482 * 110.99884 * 169.99953 * 10 9 6 22 22 H 1.08998 * 109.46822 * 60.00011 * 1 2 3 23 23 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46600 * 300.00061 * 1 2 3 25 25 H 1.09006 * 109.46990 * 239.99582 * 2 1 3 26 26 H 1.09008 * 109.47000 * 119.99958 * 2 1 3 27 27 H 1.09005 * 109.46749 * 188.38886 * 4 3 2 28 28 H 1.09000 * 109.47538 * 308.38648 * 4 3 2 29 29 H 1.09003 * 109.47343 * 68.38695 * 4 3 2 30 30 H 1.09001 * 109.47084 * 315.99754 * 5 3 2 31 31 H 1.09008 * 109.46813 * 196.00142 * 5 3 2 32 32 H 0.96704 * 113.99350 * 60.00137 * 8 6 5 33 33 H 1.09004 * 109.46518 * 299.99857 * 9 6 5 34 34 H 1.08995 * 109.47149 * 59.99265 * 9 6 5 35 35 H 1.09002 * 113.47755 * 336.06304 * 11 10 9 36 36 H 1.08997 * 113.47248 * 106.52674 * 11 10 9 37 37 H 1.09000 * 114.17026 * 272.37666 * 12 11 10 38 38 H 0.96994 * 120.00233 * 180.02562 * 16 15 13 39 39 H 1.08998 * 113.46993 * 253.46884 * 21 10 9 40 40 H 1.08995 * 113.47562 * 23.87480 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0668 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.7499 1.1799 -1.7209 7 1 3.3583 0.2031 -2.0047 8 8 3.1161 2.1931 -2.5043 9 6 5.2597 1.2151 -1.9667 10 7 5.5298 0.9734 -3.3903 11 6 5.7929 -0.4556 -3.6431 12 6 6.9188 -0.0231 -4.5928 13 6 8.1648 -0.8660 -4.5037 14 1 8.9762 -0.5638 -3.8581 15 6 8.2688 -2.0230 -5.2462 16 7 7.2810 -2.3908 -6.0327 17 14 9.8131 -3.0684 -5.1353 18 1 10.7682 -2.4414 -4.1867 19 1 9.4573 -4.4272 -4.6531 20 1 10.4410 -3.1680 -6.4773 21 6 6.9457 1.2334 -3.7111 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8901 27 1 1.9106 3.1268 1.1695 28 1 0.6037 1.9503 1.4453 29 1 2.2373 1.6296 2.0752 30 1 3.9597 0.6634 0.3600 31 1 3.8521 2.4117 0.0434 32 1 3.4169 3.0903 -2.3047 33 1 5.6513 2.1919 -1.6829 34 1 5.7431 0.4423 -1.3692 35 1 6.1487 -0.9937 -2.7645 36 1 4.9719 -0.9657 -4.1469 37 1 6.5938 0.1575 -5.6174 38 1 7.3541 -3.2050 -6.5548 39 1 7.1015 2.1546 -4.2725 40 1 7.6088 1.1470 -2.8504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594715923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:00 Heat of formation + Delta-G solvation = -12.738323 kcal Electronic energy + Delta-G solvation = -17893.690877 eV Core-core repulsion = 15130.605766 eV Total energy + Delta-G solvation = -2763.085112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23470 -38.11527 -35.97100 -32.70406 -31.40487 -30.41837 -28.32167 -26.13560 -24.76736 -24.59811 -22.76149 -21.13532 -20.64805 -18.58371 -16.86762 -16.21071 -15.71601 -15.61341 -15.11823 -14.80423 -14.45147 -14.25629 -13.79597 -13.63598 -13.08757 -12.82031 -12.31772 -11.97125 -11.89275 -11.84460 -11.66237 -11.41173 -11.28402 -11.03015 -10.97436 -10.61469 -10.54114 -10.23873 -10.04182 -9.41643 -9.15464 -8.91265 -8.43815 -8.35854 -7.90982 -6.04881 -4.09721 3.27320 3.35656 3.38946 3.73095 4.39670 4.65344 4.76694 4.88493 5.04200 5.15242 5.22483 5.25394 5.28775 5.40864 5.43548 5.49119 5.58519 5.61786 5.62910 5.78345 5.91341 5.94356 6.12363 6.16150 6.22785 6.38811 6.48668 6.69620 6.75915 6.94971 6.97394 7.17107 7.21198 7.73870 7.92360 8.06390 8.15480 8.38408 8.93927 9.55325 11.04678 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.004432 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.320429 B = 6315.468096 C = 6576.310505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 N -0.531 5.531 4 C 0.022 3.978 5 C 0.022 3.978 6 C 0.127 3.873 7 H 0.093 0.907 8 O -0.533 6.533 9 C -0.012 4.012 10 N -0.470 5.470 11 C 0.003 3.997 12 C 0.041 3.959 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.007 4.007 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.021 0.979 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.363 0.637 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.061 0.939 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 6.638 13.460 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.126 4.126 5 C -0.107 4.107 6 C 0.067 3.933 7 H 0.111 0.889 8 O -0.336 6.336 9 C -0.142 4.142 10 N -0.192 5.192 11 C -0.126 4.126 12 C 0.022 3.978 13 C -0.555 4.555 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.136 4.136 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.208 0.792 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.443 6.588 12.374 17.481 hybrid contribution 2.166 -1.084 1.715 2.968 sum -8.277 5.504 14.089 17.242 Atomic orbital electron populations 1.21793 0.94865 1.01456 1.02379 1.22153 0.96222 0.88895 1.00810 1.61916 1.13483 1.16039 1.34085 1.22445 1.01240 0.99127 0.89821 1.22901 0.87990 1.01507 0.98321 1.21704 0.91139 0.92920 0.87579 0.88937 1.86637 1.66404 1.17172 1.63375 1.23322 0.96461 1.00890 0.93511 1.68885 1.21381 1.13854 1.15059 1.24117 1.00236 0.88132 1.00091 1.20088 0.93426 0.89804 0.94449 1.21076 1.01589 1.07050 1.25785 0.92444 1.25023 0.96163 0.97674 0.94745 1.69982 1.31363 1.23909 1.26993 0.86573 0.83424 0.80266 0.77952 1.19758 1.21011 1.20861 1.24012 0.88599 1.01178 0.99779 0.91568 0.92393 0.92950 0.90391 0.95268 0.91536 0.91176 0.96085 0.94032 0.90772 0.79219 0.91878 0.93753 0.93128 0.91823 0.91749 0.92902 0.92042 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.85 37.16 0.37 -1.07 16 2 C 0.05 0.53 5.50 -3.82 -0.02 0.51 16 3 N -0.53 -6.28 4.57 -242.91 -1.11 -7.39 16 4 C 0.02 0.21 9.37 60.07 0.56 0.77 16 5 C 0.02 0.26 4.66 -3.83 -0.02 0.24 16 6 C 0.13 1.90 3.30 -26.73 -0.09 1.81 16 7 H 0.09 1.56 6.79 -51.93 -0.35 1.21 16 8 O -0.53 -8.53 13.08 -35.23 -0.46 -8.99 16 9 C -0.01 -0.19 4.48 -3.82 -0.02 -0.21 16 10 N -0.47 -9.66 6.20 -244.62 -1.52 -11.17 16 11 C 0.00 0.07 7.28 -7.54 -0.05 0.02 16 12 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 13 C -0.52 -14.17 8.83 -34.44 -0.30 -14.47 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -25.74 13.26 55.43 0.74 -25.01 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C -0.01 -0.15 7.25 -7.54 -0.05 -0.20 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.45 6.39 -51.92 -0.33 0.12 16 25 H 0.08 0.98 6.64 -51.93 -0.34 0.64 16 26 H 0.03 0.31 8.12 -51.92 -0.42 -0.11 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.60 6.14 -51.93 -0.32 0.28 16 29 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 31 H 0.07 0.79 7.93 -51.92 -0.41 0.38 16 32 H 0.36 4.56 9.05 45.56 0.41 4.98 16 33 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.04 0.74 7.30 -51.93 -0.38 0.36 16 35 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 36 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.81 8.11 -51.93 -0.42 1.39 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.05 7.87 -51.93 -0.41 0.65 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -29.88 320.46 -8.89 -38.77 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.28 Total: 3.05 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.07 Total: -10.14 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -1.89 Total: -43.57 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.46 Total: -8.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.88 -8.89 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594715923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.033 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds