Wall clock time and date at job start Mon Mar 30 2020 03:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47620 * 2 1 4 4 C 1.46901 * 110.99646 * 66.04478 * 3 2 1 5 5 C 1.46894 * 111.00052 * 190.00171 * 3 2 1 6 6 C 1.52991 * 109.47328 * 76.00501 * 5 3 2 7 7 H 1.09004 * 109.47117 * 300.51239 * 6 5 3 8 8 O 1.42903 * 109.47633 * 60.51409 * 6 5 3 9 9 C 1.53004 * 109.47503 * 180.51749 * 6 5 3 10 10 N 1.46901 * 109.47442 * 179.97438 * 9 6 5 11 11 C 1.47483 * 110.99784 * 265.96917 * 10 9 6 12 12 C 1.53511 * 87.93154 * 221.29662 * 11 10 9 13 13 C 1.50697 * 114.34462 * 139.68263 * 12 11 10 14 14 H 1.07999 * 119.99863 * 266.07944 * 13 12 11 15 15 C 1.37873 * 119.99709 * 86.07396 * 13 12 11 16 16 N 1.31518 * 120.00513 * 0.02562 * 15 13 12 17 17 Si 1.86811 * 119.99977 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46995 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46835 * 120.00202 * 17 15 13 20 20 H 1.48499 * 109.47346 * 240.00262 * 17 15 13 21 21 C 1.47482 * 110.99884 * 169.99953 * 10 9 6 22 22 H 1.08998 * 109.46822 * 60.00011 * 1 2 3 23 23 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46600 * 300.00061 * 1 2 3 25 25 H 1.09006 * 109.46990 * 239.99582 * 2 1 3 26 26 H 1.09008 * 109.47000 * 119.99958 * 2 1 3 27 27 H 1.09005 * 109.46749 * 188.38886 * 4 3 2 28 28 H 1.09000 * 109.47538 * 308.38648 * 4 3 2 29 29 H 1.09003 * 109.47343 * 68.38695 * 4 3 2 30 30 H 1.09001 * 109.47084 * 315.99754 * 5 3 2 31 31 H 1.09008 * 109.46813 * 196.00142 * 5 3 2 32 32 H 0.96704 * 113.99350 * 60.00137 * 8 6 5 33 33 H 1.09004 * 109.46518 * 299.99857 * 9 6 5 34 34 H 1.08995 * 109.47149 * 59.99265 * 9 6 5 35 35 H 1.09002 * 113.47755 * 336.06304 * 11 10 9 36 36 H 1.08997 * 113.47248 * 106.52674 * 11 10 9 37 37 H 1.09000 * 114.17026 * 272.37666 * 12 11 10 38 38 H 0.96994 * 120.00233 * 180.02562 * 16 15 13 39 39 H 1.08998 * 113.46993 * 253.46884 * 21 10 9 40 40 H 1.08995 * 113.47562 * 23.87480 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0668 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.7499 1.1799 -1.7209 7 1 3.3583 0.2031 -2.0047 8 8 3.1161 2.1931 -2.5043 9 6 5.2597 1.2151 -1.9667 10 7 5.5298 0.9734 -3.3903 11 6 5.7929 -0.4556 -3.6431 12 6 6.9188 -0.0231 -4.5928 13 6 8.1648 -0.8660 -4.5037 14 1 8.9762 -0.5638 -3.8581 15 6 8.2688 -2.0230 -5.2462 16 7 7.2810 -2.3908 -6.0327 17 14 9.8131 -3.0684 -5.1353 18 1 10.7682 -2.4414 -4.1867 19 1 9.4573 -4.4272 -4.6531 20 1 10.4410 -3.1680 -6.4773 21 6 6.9457 1.2334 -3.7111 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8901 27 1 1.9106 3.1268 1.1695 28 1 0.6037 1.9503 1.4453 29 1 2.2373 1.6296 2.0752 30 1 3.9597 0.6634 0.3600 31 1 3.8521 2.4117 0.0434 32 1 3.4169 3.0903 -2.3047 33 1 5.6513 2.1919 -1.6829 34 1 5.7431 0.4423 -1.3692 35 1 6.1487 -0.9937 -2.7645 36 1 4.9719 -0.9657 -4.1469 37 1 6.5938 0.1575 -5.6174 38 1 7.3541 -3.2050 -6.5548 39 1 7.1015 2.1546 -4.2725 40 1 7.6088 1.1470 -2.8504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594715923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:59 Heat of formation + Delta-G solvation = -36.939812 kcal Electronic energy + Delta-G solvation = -17894.740333 eV Core-core repulsion = 15130.605766 eV Total energy + Delta-G solvation = -2764.134567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83049 -39.25016 -37.11573 -34.73546 -32.59120 -31.56350 -29.67267 -27.59449 -26.57488 -25.88291 -24.10753 -22.45921 -21.61425 -20.46369 -18.74244 -17.50229 -16.94892 -16.62190 -16.55165 -16.40664 -15.92307 -15.49481 -15.24606 -14.81699 -14.54689 -13.90686 -13.72997 -13.35071 -13.17332 -13.14625 -12.89386 -12.73712 -12.70809 -12.37431 -12.32617 -12.11989 -11.92355 -11.79527 -11.56460 -11.14486 -10.92357 -10.67402 -10.50139 -9.61937 -9.22516 -8.15872 -6.28157 1.41254 1.42794 1.54701 2.41550 2.79683 3.13212 3.34028 3.66911 3.84396 4.03589 4.13280 4.18130 4.20382 4.30387 4.41649 4.51154 4.54513 4.57032 4.60229 4.64794 4.72840 4.74649 4.87273 4.89847 4.96329 4.99678 5.09419 5.11993 5.22083 5.33736 5.52396 5.61428 5.83927 6.06156 6.15117 6.28395 6.41165 6.82183 7.07139 7.40879 8.94254 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.004432 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.320429 B = 6315.468096 C = 6576.310505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.547 5.547 4 C 0.023 3.977 5 C 0.032 3.968 6 C 0.135 3.865 7 H 0.066 0.934 8 O -0.553 6.553 9 C -0.011 4.011 10 N -0.473 5.473 11 C 0.016 3.984 12 C 0.019 3.981 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.960 3.040 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.010 3.990 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.378 0.622 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 7.479 15.544 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.272 5.272 4 C -0.125 4.125 5 C -0.097 4.097 6 C 0.074 3.926 7 H 0.084 0.916 8 O -0.358 6.358 9 C -0.140 4.140 10 N -0.195 5.195 11 C -0.114 4.114 12 C 0.000 4.000 13 C -0.569 4.569 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.785 3.215 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.119 4.119 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.226 0.774 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.950 7.456 14.478 19.084 hybrid contribution 1.955 -1.286 1.059 2.568 sum -7.995 6.170 15.537 18.531 Atomic orbital electron populations 1.21753 0.93737 1.02138 1.02336 1.22162 0.97200 0.88871 1.00107 1.61885 1.13222 1.16287 1.35757 1.22491 1.01882 0.99331 0.88796 1.22733 0.88537 1.02665 0.95758 1.21547 0.89735 0.91719 0.89580 0.91646 1.86600 1.66803 1.18356 1.64089 1.23397 0.97723 1.02275 0.90625 1.68806 1.20816 1.11369 1.18494 1.23839 0.98436 0.89787 0.99303 1.20045 0.93788 0.92652 0.93514 1.21414 1.02261 1.07436 1.25748 0.92051 1.25873 0.99311 0.99029 0.94383 1.70117 1.33533 1.24546 1.28042 0.85479 0.79538 0.78376 0.78101 1.18615 1.20634 1.20551 1.23830 0.89305 0.99560 0.99194 0.92946 0.91437 0.91537 0.92533 0.94521 0.90660 0.90373 0.95406 0.93710 0.88771 0.77449 0.89203 0.93561 0.93079 0.94265 0.95502 0.92843 0.90837 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.85 71.98 0.71 -1.90 16 2 C 0.04 0.97 5.50 86.30 0.47 1.44 16 3 N -0.55 -11.96 4.57 -922.44 -4.21 -16.17 16 4 C 0.02 0.37 9.37 127.69 1.20 1.56 16 5 C 0.03 0.70 4.66 86.30 0.40 1.10 16 6 C 0.13 3.88 3.30 30.59 0.10 3.98 16 7 H 0.07 2.24 6.79 -2.39 -0.02 2.23 16 8 O -0.55 -17.05 13.08 -148.98 -1.95 -19.00 16 9 C -0.01 -0.33 4.48 86.30 0.39 0.06 16 10 N -0.47 -19.19 6.20 -927.84 -5.75 -24.94 16 11 C 0.02 0.75 7.28 83.58 0.61 1.36 16 12 C 0.02 1.00 3.76 -11.20 -0.04 0.95 16 13 C -0.53 -29.26 8.83 25.60 0.23 -29.04 16 14 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 15 C 0.01 0.74 5.46 84.65 0.46 1.20 16 16 N -0.92 -55.04 13.26 21.45 0.28 -54.76 16 17 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 C 0.01 0.41 7.25 83.58 0.61 1.02 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.02 6.39 -2.38 -0.02 1.00 16 25 H 0.06 1.45 6.64 -2.38 -0.02 1.44 16 26 H 0.04 0.73 8.12 -2.38 -0.02 0.71 16 27 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.08 1.13 6.14 -2.39 -0.01 1.12 16 29 H 0.03 0.42 8.13 -2.39 -0.02 0.40 16 30 H 0.04 0.96 8.00 -2.39 -0.02 0.94 16 31 H 0.09 1.69 7.93 -2.38 -0.02 1.67 16 32 H 0.38 8.72 9.05 -74.05 -0.67 8.05 16 33 H 0.09 2.34 8.08 -2.39 -0.02 2.32 16 34 H 0.05 1.45 7.30 -2.39 -0.02 1.43 16 35 H 0.05 2.39 7.38 -2.39 -0.02 2.38 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.03 1.58 8.11 -2.39 -0.02 1.56 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.06 2.49 7.87 -2.39 -0.02 2.47 16 Total: -1.00 -64.60 320.46 -4.14 -68.74 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.33 Total: 19.08 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 5.13 Total: -18.26 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -9.68 Total: -95.87 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.95 Total: -19.00 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.60 -4.14 -68.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594715923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.798 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds