Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47316 * 2 1 4 4 C 1.46903 * 110.99722 * 293.94839 * 3 2 1 5 5 C 1.46901 * 111.00055 * 169.99820 * 3 2 1 6 6 C 1.52999 * 109.46925 * 287.95576 * 5 3 2 7 7 H 1.08996 * 109.47413 * 58.53307 * 6 5 3 8 8 O 1.42899 * 109.47158 * 298.52912 * 6 5 3 9 9 C 1.53001 * 109.47047 * 178.53282 * 6 5 3 10 10 N 1.46899 * 109.47198 * 185.00140 * 9 6 5 11 11 C 1.47484 * 110.99713 * 265.96748 * 10 9 6 12 12 C 1.53518 * 87.93147 * 221.29579 * 11 10 9 13 13 C 1.50699 * 114.33922 * 139.68511 * 12 11 10 14 14 H 1.08000 * 120.00330 * 266.07358 * 13 12 11 15 15 C 1.37879 * 119.99926 * 86.07642 * 13 12 11 16 16 N 1.31514 * 120.00384 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99887 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47445 * 89.99806 * 17 15 13 19 19 H 1.48500 * 109.46789 * 209.99880 * 17 15 13 20 20 H 1.48500 * 109.46924 * 329.99653 * 17 15 13 21 21 C 1.47481 * 111.00056 * 170.00220 * 10 9 6 22 22 H 1.09000 * 109.46936 * 60.00121 * 1 2 3 23 23 H 1.09000 * 109.47470 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47091 * 300.00772 * 1 2 3 25 25 H 1.09000 * 109.47091 * 239.99228 * 2 1 3 26 26 H 1.09004 * 109.46546 * 119.99563 * 2 1 3 27 27 H 1.08997 * 109.47125 * 302.02168 * 4 3 2 28 28 H 1.09000 * 109.46901 * 62.02441 * 4 3 2 29 29 H 1.09006 * 109.47036 * 182.01983 * 4 3 2 30 30 H 1.08999 * 109.47169 * 167.95709 * 5 3 2 31 31 H 1.08999 * 109.47365 * 47.95557 * 5 3 2 32 32 H 0.96699 * 114.00501 * 300.00412 * 8 6 5 33 33 H 1.09001 * 109.47272 * 305.00187 * 9 6 5 34 34 H 1.09000 * 109.47455 * 65.00021 * 9 6 5 35 35 H 1.08991 * 113.47931 * 336.06491 * 11 10 9 36 36 H 1.08998 * 113.46949 * 106.53526 * 11 10 9 37 37 H 1.09002 * 114.17140 * 272.38016 * 12 11 10 38 38 H 0.96994 * 120.00432 * 180.02562 * 16 15 13 39 39 H 1.09003 * 113.47187 * 253.47150 * 21 10 9 40 40 H 1.09003 * 113.47759 * 23.86798 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 -1.2534 5 6 3.4685 1.4310 0.2382 6 6 3.7564 1.0827 1.6999 7 1 3.3614 0.0914 1.9218 8 8 3.1317 2.0458 2.5510 9 6 5.2675 1.0950 1.9391 10 7 5.5502 0.6448 3.3085 11 6 5.6661 1.7917 4.2285 12 6 6.8581 1.0770 4.8805 13 6 8.0038 1.9857 5.2446 14 1 8.8244 2.1227 4.5560 15 6 8.0044 2.6424 6.4570 16 7 9.0044 3.4351 6.7751 17 14 6.5854 2.4050 7.6485 18 1 6.8810 1.2618 8.5490 19 1 6.4059 3.6380 8.4564 20 1 5.3411 2.1265 6.8872 21 6 6.9942 0.4154 3.5020 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0903 1.5168 -2.0955 28 1 0.5858 2.1110 -1.3529 29 1 2.0756 3.0786 -1.2418 30 1 3.8404 2.4329 0.0234 31 1 3.9667 0.7115 -0.4116 32 1 3.4357 2.9526 2.4085 33 1 5.7532 0.4256 1.2291 34 1 5.6487 2.1071 1.8034 35 1 5.9374 2.7223 3.7303 36 1 4.8098 1.9029 4.8937 37 1 6.5831 0.3894 5.6804 38 1 9.0050 3.8968 7.6281 39 1 7.2634 -0.6397 3.5513 40 1 7.6199 0.9780 2.8091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594715927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = -10.543698 kcal Electronic energy + Delta-G solvation = -18011.178449 eV Core-core repulsion = 15248.188503 eV Total energy + Delta-G solvation = -2762.989946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44665 -38.22475 -36.04237 -32.64933 -31.52917 -30.61638 -28.61636 -26.33362 -24.95346 -24.60092 -22.71084 -21.17128 -20.70742 -18.58762 -17.11332 -16.38072 -15.96618 -15.68256 -15.25486 -14.78238 -14.51924 -14.28898 -14.02970 -13.45554 -13.15324 -12.67284 -12.59744 -12.37301 -12.02929 -11.93487 -11.78631 -11.60643 -11.41069 -11.07348 -11.00914 -10.60087 -10.39846 -10.16475 -9.91645 -9.54066 -9.38282 -9.09838 -8.53316 -8.42584 -8.09149 -6.09014 -4.09491 3.33285 3.41656 3.49046 3.66909 4.45240 4.53565 4.68174 4.83095 4.95682 5.07898 5.15254 5.18325 5.26688 5.32640 5.35375 5.38417 5.48646 5.57009 5.60979 5.70835 5.80202 5.86138 5.88301 6.06565 6.14950 6.25668 6.36748 6.46632 6.53290 6.87759 6.88471 6.91728 7.03577 7.38475 7.70881 7.89361 7.98711 8.50192 8.93311 9.54384 11.03438 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042145 B = 0.004685 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.219038 B = 5975.074748 C = 6147.036827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.023 3.977 5 C 0.022 3.978 6 C 0.125 3.875 7 H 0.099 0.901 8 O -0.540 6.540 9 C -0.012 4.012 10 N -0.476 5.476 11 C 0.001 3.999 12 C -0.003 4.003 13 C -0.512 4.512 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.255 1.255 21 C 0.006 3.994 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.021 0.979 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.366 0.634 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.065 0.935 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -4.319 -14.827 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.125 4.125 5 C -0.107 4.107 6 C 0.064 3.936 7 H 0.117 0.883 8 O -0.344 6.344 9 C -0.142 4.142 10 N -0.199 5.199 11 C -0.128 4.128 12 C -0.022 4.022 13 C -0.550 4.550 14 H 0.091 0.909 15 C -0.128 4.128 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.179 1.179 21 C -0.123 4.123 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.212 0.788 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.672 -5.015 -13.999 20.890 hybrid contribution 0.691 0.720 -0.663 1.199 sum -13.981 -4.295 -14.662 20.709 Atomic orbital electron populations 1.21777 0.94886 1.01404 1.02425 1.22155 0.96225 0.88881 1.00745 1.61908 1.13439 1.16046 1.34171 1.22429 1.01674 0.98779 0.89635 1.22899 0.88021 1.01682 0.98126 1.21811 0.91132 0.93674 0.86950 0.88336 1.86627 1.67202 1.19000 1.61544 1.23323 0.96568 0.99758 0.94561 1.68799 1.18260 1.28740 1.04052 1.24317 1.00172 0.92667 0.95687 1.20533 0.94112 0.95059 0.92505 1.20920 1.05265 1.25571 1.03204 0.90939 1.25008 0.95611 0.94446 0.97771 1.69910 1.31214 1.29613 1.23053 0.86871 0.83998 0.77607 0.81292 1.20330 1.21524 1.17884 1.23822 0.88589 1.00142 0.99720 0.92957 0.92450 0.91606 0.95295 0.90362 0.96041 0.91198 0.91552 0.90627 0.94114 0.78836 0.91277 0.93710 0.92185 0.91497 0.92669 0.92612 0.91695 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.84 37.16 0.37 -0.96 16 2 C 0.05 0.49 5.53 -3.83 -0.02 0.47 16 3 N -0.53 -5.94 4.61 -242.92 -1.12 -7.06 16 4 C 0.02 0.21 9.27 60.07 0.56 0.77 16 5 C 0.02 0.24 4.63 -3.82 -0.02 0.22 16 6 C 0.12 1.72 3.23 -26.73 -0.09 1.64 16 7 H 0.10 1.47 6.56 -51.93 -0.34 1.13 16 8 O -0.54 -8.41 12.57 -35.23 -0.44 -8.85 16 9 C -0.01 -0.18 4.53 -3.82 -0.02 -0.20 16 10 N -0.48 -9.12 6.31 -244.64 -1.54 -10.67 16 11 C 0.00 0.01 6.07 -7.55 -0.05 -0.03 16 12 C 0.00 -0.06 2.95 -91.24 -0.27 -0.33 16 13 C -0.51 -14.23 9.38 -34.44 -0.32 -14.55 16 14 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 17 Si 0.88 21.53 27.14 -169.99 -4.61 16.92 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.25 -6.04 5.68 56.52 0.32 -5.72 16 21 C 0.01 0.12 7.24 -7.55 -0.05 0.07 16 22 H 0.05 0.43 6.60 -51.93 -0.34 0.08 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.28 8.11 -51.93 -0.42 -0.14 16 26 H 0.08 0.88 6.38 -51.93 -0.33 0.55 16 27 H 0.02 0.18 8.12 -51.93 -0.42 -0.24 16 28 H 0.07 0.58 6.57 -51.93 -0.34 0.24 16 29 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 30 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 31 H 0.04 0.43 8.05 -51.93 -0.42 0.01 16 32 H 0.37 4.76 9.05 45.56 0.41 5.17 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.04 0.69 7.30 -51.93 -0.38 0.31 16 35 H 0.06 1.29 7.38 -51.93 -0.38 0.91 16 36 H 0.07 1.49 7.11 -51.93 -0.37 1.12 16 37 H 0.06 1.34 7.04 -51.93 -0.37 0.97 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -30.65 313.45 -8.49 -39.14 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.26 Total: 3.24 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.01 Total: -10.90 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.89 Total: -44.27 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.44 Total: -8.85 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.61 Total: 16.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.65 -8.49 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594715927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.601 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds