Wall clock time and date at job start Mon Mar 30 2020 03:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47316 * 2 1 4 4 C 1.46903 * 110.99722 * 293.94839 * 3 2 1 5 5 C 1.46901 * 111.00055 * 169.99820 * 3 2 1 6 6 C 1.52999 * 109.46925 * 287.95576 * 5 3 2 7 7 H 1.08996 * 109.47413 * 58.53307 * 6 5 3 8 8 O 1.42899 * 109.47158 * 298.52912 * 6 5 3 9 9 C 1.53001 * 109.47047 * 178.53282 * 6 5 3 10 10 N 1.46899 * 109.47198 * 185.00140 * 9 6 5 11 11 C 1.47484 * 110.99713 * 265.96748 * 10 9 6 12 12 C 1.53518 * 87.93147 * 221.29579 * 11 10 9 13 13 C 1.50699 * 114.33922 * 139.68511 * 12 11 10 14 14 H 1.08000 * 120.00330 * 266.07358 * 13 12 11 15 15 C 1.37879 * 119.99926 * 86.07642 * 13 12 11 16 16 N 1.31514 * 120.00384 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99887 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47445 * 89.99806 * 17 15 13 19 19 H 1.48500 * 109.46789 * 209.99880 * 17 15 13 20 20 H 1.48500 * 109.46924 * 329.99653 * 17 15 13 21 21 C 1.47481 * 111.00056 * 170.00220 * 10 9 6 22 22 H 1.09000 * 109.46936 * 60.00121 * 1 2 3 23 23 H 1.09000 * 109.47470 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47091 * 300.00772 * 1 2 3 25 25 H 1.09000 * 109.47091 * 239.99228 * 2 1 3 26 26 H 1.09004 * 109.46546 * 119.99563 * 2 1 3 27 27 H 1.08997 * 109.47125 * 302.02168 * 4 3 2 28 28 H 1.09000 * 109.46901 * 62.02441 * 4 3 2 29 29 H 1.09006 * 109.47036 * 182.01983 * 4 3 2 30 30 H 1.08999 * 109.47169 * 167.95709 * 5 3 2 31 31 H 1.08999 * 109.47365 * 47.95557 * 5 3 2 32 32 H 0.96699 * 114.00501 * 300.00412 * 8 6 5 33 33 H 1.09001 * 109.47272 * 305.00187 * 9 6 5 34 34 H 1.09000 * 109.47455 * 65.00021 * 9 6 5 35 35 H 1.08991 * 113.47931 * 336.06491 * 11 10 9 36 36 H 1.08998 * 113.46949 * 106.53526 * 11 10 9 37 37 H 1.09002 * 114.17140 * 272.38016 * 12 11 10 38 38 H 0.96994 * 120.00432 * 180.02562 * 16 15 13 39 39 H 1.09003 * 113.47187 * 253.47150 * 21 10 9 40 40 H 1.09003 * 113.47759 * 23.86798 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 -1.2534 5 6 3.4685 1.4310 0.2382 6 6 3.7564 1.0827 1.6999 7 1 3.3614 0.0914 1.9218 8 8 3.1317 2.0458 2.5510 9 6 5.2675 1.0950 1.9391 10 7 5.5502 0.6448 3.3085 11 6 5.6661 1.7917 4.2285 12 6 6.8581 1.0770 4.8805 13 6 8.0038 1.9857 5.2446 14 1 8.8244 2.1227 4.5560 15 6 8.0044 2.6424 6.4570 16 7 9.0044 3.4351 6.7751 17 14 6.5854 2.4050 7.6485 18 1 6.8810 1.2618 8.5490 19 1 6.4059 3.6380 8.4564 20 1 5.3411 2.1265 6.8872 21 6 6.9942 0.4154 3.5020 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0903 1.5168 -2.0955 28 1 0.5858 2.1110 -1.3529 29 1 2.0756 3.0786 -1.2418 30 1 3.8404 2.4329 0.0234 31 1 3.9667 0.7115 -0.4116 32 1 3.4357 2.9526 2.4085 33 1 5.7532 0.4256 1.2291 34 1 5.6487 2.1071 1.8034 35 1 5.9374 2.7223 3.7303 36 1 4.8098 1.9029 4.8937 37 1 6.5831 0.3894 5.6804 38 1 9.0050 3.8968 7.6281 39 1 7.2634 -0.6397 3.5513 40 1 7.6199 0.9780 2.8091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594715927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:02 Heat of formation + Delta-G solvation = -36.225111 kcal Electronic energy + Delta-G solvation = -18012.292079 eV Core-core repulsion = 15248.188503 eV Total energy + Delta-G solvation = -2764.103575 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95000 -39.26517 -37.11432 -34.72835 -32.72649 -31.66357 -29.93115 -27.68380 -26.63151 -25.77051 -23.98542 -22.46171 -21.58557 -20.37993 -19.12000 -17.58571 -17.12882 -16.58948 -16.50265 -16.37611 -15.75865 -15.54571 -15.12386 -15.07665 -14.61901 -14.22761 -13.69581 -13.46036 -13.35504 -13.12124 -12.85667 -12.75084 -12.68959 -12.35427 -12.15254 -11.98344 -11.84544 -11.77501 -11.57967 -11.33323 -11.07118 -10.75694 -10.58899 -9.69509 -9.21952 -8.29398 -6.34056 1.38386 1.41524 1.54835 2.38406 2.79462 3.04761 3.30381 3.63753 3.88233 3.99661 4.08197 4.15492 4.19807 4.27533 4.39078 4.46313 4.51065 4.59495 4.61543 4.63947 4.72214 4.72906 4.77735 4.89680 4.92132 5.01002 5.09953 5.12427 5.16775 5.35531 5.45705 5.48461 5.64473 6.07413 6.15500 6.29359 6.31736 6.71389 6.94837 7.33202 8.86564 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042145 B = 0.004685 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.219038 B = 5975.074748 C = 6147.036827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.549 5.549 4 C 0.024 3.976 5 C 0.030 3.970 6 C 0.132 3.868 7 H 0.088 0.912 8 O -0.560 6.560 9 C -0.012 4.012 10 N -0.474 5.474 11 C 0.014 3.986 12 C -0.020 4.020 13 C -0.514 4.514 14 H 0.035 0.965 15 C 0.018 3.982 16 N -0.948 5.948 17 Si 0.940 3.060 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.240 1.240 21 C 0.015 3.985 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.375 0.625 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.552 -5.059 -16.000 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.273 5.273 4 C -0.124 4.124 5 C -0.098 4.098 6 C 0.072 3.928 7 H 0.106 0.894 8 O -0.366 6.366 9 C -0.141 4.141 10 N -0.196 5.196 11 C -0.115 4.115 12 C -0.039 4.039 13 C -0.552 4.552 14 H 0.054 0.946 15 C -0.179 4.179 16 N -0.588 5.588 17 Si 0.764 3.236 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.163 1.163 21 C -0.114 4.114 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.223 0.777 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.539 -5.766 -15.199 23.191 hybrid contribution 1.319 0.938 -0.383 1.663 sum -15.221 -4.828 -15.582 22.311 Atomic orbital electron populations 1.21741 0.94039 1.02142 1.02118 1.22177 0.96956 0.88575 1.00484 1.61885 1.13228 1.16634 1.35565 1.22454 1.02190 0.98830 0.88909 1.22740 0.88538 1.02388 0.96169 1.21723 0.89618 0.92984 0.88487 0.89437 1.86591 1.67664 1.19931 1.62371 1.23400 0.98014 1.00196 0.92516 1.68746 1.17117 1.27642 1.06096 1.24034 0.98434 0.93062 0.95955 1.20548 0.93774 0.95266 0.94336 1.21143 1.05534 1.25973 1.02514 0.94639 1.25845 0.98189 0.94169 0.99728 1.70044 1.33558 1.31258 1.23914 0.85841 0.81137 0.77616 0.79001 1.19655 1.21326 1.16344 1.23694 0.89525 1.00748 0.97383 0.92012 0.91256 0.93080 0.94404 0.91702 0.95288 0.90566 0.91151 0.89776 0.93133 0.77740 0.89411 0.93506 0.92574 0.92062 0.92835 0.92458 0.90111 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.84 71.98 0.71 -1.60 16 2 C 0.05 0.85 5.53 86.30 0.48 1.33 16 3 N -0.55 -11.04 4.61 -922.45 -4.25 -15.29 16 4 C 0.02 0.37 9.27 127.69 1.18 1.56 16 5 C 0.03 0.61 4.63 86.30 0.40 1.01 16 6 C 0.13 3.38 3.23 30.59 0.10 3.48 16 7 H 0.09 2.46 6.56 -2.39 -0.02 2.45 16 8 O -0.56 -16.48 12.57 -148.98 -1.87 -18.35 16 9 C -0.01 -0.33 4.53 86.30 0.39 0.06 16 10 N -0.47 -17.21 6.31 -927.91 -5.85 -23.06 16 11 C 0.01 0.60 6.07 83.57 0.51 1.11 16 12 C -0.02 -0.93 2.95 -11.20 -0.03 -0.96 16 13 C -0.51 -28.98 9.38 25.60 0.24 -28.74 16 14 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 15 C 0.02 1.06 5.47 84.66 0.46 1.53 16 16 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 17 Si 0.94 44.41 27.14 68.60 1.86 46.27 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.24 -10.68 5.68 99.48 0.56 -10.11 16 21 C 0.02 0.60 7.24 83.57 0.61 1.20 16 22 H 0.06 0.87 6.60 -2.39 -0.02 0.85 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 0.64 8.11 -2.39 -0.02 0.62 16 26 H 0.06 1.37 6.38 -2.39 -0.02 1.36 16 27 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 28 H 0.08 1.08 6.57 -2.39 -0.02 1.07 16 29 H 0.07 1.03 7.96 -2.38 -0.02 1.01 16 30 H 0.08 1.54 7.87 -2.39 -0.02 1.52 16 31 H 0.05 0.92 8.05 -2.39 -0.02 0.90 16 32 H 0.38 9.14 9.05 -74.06 -0.67 8.47 16 33 H 0.09 2.19 8.08 -2.39 -0.02 2.18 16 34 H 0.05 1.34 7.30 -2.39 -0.02 1.32 16 35 H 0.06 2.36 7.38 -2.39 -0.02 2.34 16 36 H 0.06 2.62 7.11 -2.39 -0.02 2.60 16 37 H 0.05 2.52 7.04 -2.39 -0.02 2.51 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 Total: -1.00 -65.47 313.45 -4.58 -70.06 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.19 Total: 18.90 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 5.04 Total: -20.03 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -9.81 Total: -96.84 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.87 Total: -18.35 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.86 Total: 46.27 kcal Total: -65.47 -4.58 -70.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594715927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.832 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds