Wall clock time and date at job start Mon Mar 30 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00091 * 2 1 4 4 C 1.46899 * 110.99924 * 123.95131 * 2 1 3 5 5 C 1.53001 * 109.47031 * 66.05111 * 4 2 1 6 6 C 1.53003 * 109.47404 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47342 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.51432 * 54.90024 * 7 6 5 9 9 C 1.53303 * 109.51379 * 174.99865 * 7 6 5 10 10 N 1.47146 * 108.38499 * 172.22757 * 9 7 6 11 11 C 1.36928 * 120.98469 * 129.44241 * 10 9 7 12 12 H 1.08000 * 120.00165 * 334.48410 * 11 10 9 13 13 C 1.38814 * 120.00089 * 154.47931 * 11 10 9 14 14 N 1.31616 * 120.00426 * 334.61142 * 13 11 10 15 15 Si 1.86803 * 119.99746 * 154.60861 * 13 11 10 16 16 H 1.48502 * 109.46962 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47414 * 300.00137 * 15 13 11 18 18 H 1.48504 * 109.47243 * 60.00554 * 15 13 11 19 19 C 1.47157 * 118.03632 * 309.71612 * 10 9 7 20 20 C 1.52877 * 108.60677 * 50.22792 * 19 10 9 21 21 O 1.42964 * 109.29867 * 307.93302 * 20 19 10 22 22 H 1.08990 * 109.47867 * 296.04459 * 1 2 3 23 23 H 1.09007 * 109.47229 * 56.04853 * 1 2 3 24 24 H 1.09009 * 109.47217 * 176.04439 * 1 2 3 25 25 H 1.08998 * 109.47487 * 183.94791 * 3 2 1 26 26 H 1.08995 * 109.46988 * 303.95343 * 3 2 1 27 27 H 1.09004 * 109.46731 * 63.94666 * 3 2 1 28 28 H 1.08995 * 109.47294 * 306.04845 * 4 2 1 29 29 H 1.08997 * 109.47082 * 186.04709 * 4 2 1 30 30 H 1.08995 * 109.47299 * 59.99737 * 5 4 2 31 31 H 1.08997 * 109.46859 * 299.99734 * 5 4 2 32 32 H 1.09000 * 109.46863 * 59.99240 * 6 5 4 33 33 H 1.09007 * 109.46601 * 300.00185 * 6 5 4 34 34 H 1.08999 * 109.67670 * 52.49996 * 9 7 6 35 35 H 1.09002 * 109.67742 * 291.94986 * 9 7 6 36 36 H 0.97001 * 119.99238 * 354.16152 * 14 13 11 37 37 H 1.09000 * 109.68496 * 170.01037 * 19 10 9 38 38 H 1.09001 * 109.67957 * 290.56162 * 19 10 9 39 39 H 1.08999 * 109.58365 * 187.92863 * 20 19 10 40 40 H 1.09000 * 109.37029 * 67.81670 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1792 -3.0403 2.1555 7 6 1.8147 -4.5168 1.9886 8 1 2.1711 -4.8728 1.0219 9 6 2.4680 -5.3353 3.1081 10 7 1.9543 -6.7123 3.0367 11 6 2.8073 -7.7834 3.0294 12 1 3.8187 -7.6658 2.6693 13 6 2.3722 -9.0204 3.4849 14 7 1.3863 -9.0921 4.3540 15 14 3.1859 -10.5832 2.8644 16 1 2.5430 -11.7616 3.4995 17 1 3.0322 -10.6695 1.3900 18 1 4.6297 -10.5609 3.2112 19 6 0.4970 -6.9041 2.9671 20 6 -0.0605 -6.0095 1.8599 21 8 0.3951 -4.6694 2.0609 22 1 -0.3634 0.4512 0.9232 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3634 -1.0253 -0.0709 25 1 3.0827 1.3433 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7042 1.8724 0.9233 28 1 1.5610 -0.3872 2.0628 29 1 3.0796 -0.6610 1.1757 30 1 2.0658 -2.6213 0.0452 31 1 0.5472 -2.3475 0.9323 32 1 1.7444 -2.6614 3.0805 33 1 3.2635 -2.9354 2.1940 34 1 2.2175 -4.8996 4.0754 35 1 3.5500 -5.3397 2.9761 36 1 1.0204 -8.2810 4.7402 37 1 0.2743 -7.9471 2.7419 38 1 0.0446 -6.6292 3.9200 39 1 -1.1499 -6.0314 1.8862 40 1 0.2884 -6.3714 0.8927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595905656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:23 Heat of formation + Delta-G solvation = -29.197677 kcal Electronic energy + Delta-G solvation = -18065.319953 eV Core-core repulsion = 15301.521110 eV Total energy + Delta-G solvation = -2763.798843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.74556 -37.70497 -34.81477 -33.73637 -31.18575 -30.08569 -27.76649 -27.43171 -25.65896 -23.37544 -23.08636 -21.25971 -20.65715 -19.54587 -17.44208 -16.15248 -15.65113 -15.41848 -15.06450 -14.67489 -14.26376 -14.05008 -13.85874 -13.64651 -13.49272 -12.58765 -12.57423 -12.29465 -12.14963 -11.86051 -11.71756 -11.42311 -11.14357 -10.95959 -10.64113 -10.49550 -10.38845 -10.35291 -10.07562 -9.87944 -9.40425 -9.07503 -8.51331 -8.36290 -6.90008 -6.09025 -3.24639 3.48510 3.51755 3.70042 3.81294 4.34393 4.56605 4.84599 4.98959 5.05398 5.17027 5.23261 5.35725 5.37211 5.42480 5.47203 5.57650 5.63933 5.66350 5.74054 5.82157 5.90814 5.95804 6.04390 6.11642 6.25144 6.33493 6.37874 6.46684 6.49791 6.70601 6.87112 6.89785 6.91281 7.07560 7.86478 7.93937 8.52392 9.05802 9.80691 10.24851 11.19008 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051984 B = 0.004375 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.494758 B = 6398.091880 C = 6620.991946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.111 4.111 6 C -0.107 4.107 7 C 0.078 3.922 8 H 0.052 0.948 9 C 0.121 3.879 10 N -0.603 5.603 11 C -0.351 4.351 12 H 0.059 0.941 13 C -0.025 4.025 14 N -0.916 5.916 15 Si 1.065 2.935 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.292 1.292 19 C 0.118 3.882 20 C 0.046 3.954 21 O -0.389 6.389 22 H 0.024 0.976 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.081 0.919 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 16.073 -7.170 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.019 3.981 8 H 0.070 0.930 9 C -0.006 4.006 10 N -0.328 5.328 11 C -0.480 4.480 12 H 0.076 0.924 13 C -0.227 4.227 14 N -0.556 5.556 15 Si 0.895 3.105 16 H -0.210 1.210 17 H -0.220 1.220 18 H -0.219 1.219 19 C -0.008 4.008 20 C -0.032 4.032 21 O -0.308 6.308 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.771 14.307 -7.497 16.171 hybrid contribution 0.007 1.888 0.711 2.017 sum -0.763 16.195 -6.786 17.576 Atomic orbital electron populations 1.22442 0.87382 1.02808 1.00093 1.61994 1.08162 1.13483 1.43709 1.22374 1.00728 0.89066 1.00243 1.22215 0.99892 0.94411 0.90839 1.21537 1.02025 0.92714 0.98642 1.21516 1.00562 0.93725 0.98725 1.22545 0.82156 0.94449 0.98993 0.92953 1.21568 0.97347 0.86382 0.95263 1.44142 1.01286 1.00827 1.86559 1.19998 0.96739 0.89996 1.41254 0.92370 1.25866 1.00107 1.00800 0.95924 1.70782 1.28530 1.32029 1.24247 0.83523 0.75117 0.76073 0.75810 1.21025 1.22018 1.21942 1.21520 0.84712 0.99528 0.95069 1.23037 0.98034 0.83116 0.98983 1.87763 1.21572 1.28009 1.93475 0.95753 0.91713 0.90667 0.91430 0.91557 0.95856 0.94897 0.90939 0.91458 0.91190 0.91547 0.90880 0.95938 0.92069 0.92003 0.89628 0.95814 0.90042 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 60.06 0.56 0.77 16 2 N -0.55 -6.13 5.02 -251.27 -1.26 -7.40 16 3 C 0.02 0.22 9.57 60.07 0.57 0.79 16 4 C 0.05 0.62 4.96 -3.82 -0.02 0.60 16 5 C -0.11 -1.47 5.04 -26.73 -0.13 -1.60 16 6 C -0.11 -1.55 4.92 -26.73 -0.13 -1.69 16 7 C 0.08 1.45 2.78 -26.58 -0.07 1.38 16 8 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 9 C 0.12 2.65 6.03 -3.53 -0.02 2.63 16 10 N -0.60 -15.69 2.93 -172.08 -0.50 -16.19 16 11 C -0.35 -9.99 9.55 -15.06 -0.14 -10.13 16 12 H 0.06 1.65 7.94 -52.49 -0.42 1.23 16 13 C -0.03 -0.72 4.71 -17.43 -0.08 -0.80 16 14 N -0.92 -27.72 12.41 55.49 0.69 -27.03 16 15 Si 1.07 25.31 29.99 -169.99 -5.10 20.22 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.12 2.86 4.85 -3.75 -0.02 2.84 16 20 C 0.05 0.94 6.97 37.09 0.26 1.19 16 21 O -0.39 -7.74 9.93 -35.23 -0.35 -8.09 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 24 H 0.07 0.82 6.47 -51.92 -0.34 0.48 16 25 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 26 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.00 6.24 -51.93 -0.32 0.67 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 36 H 0.27 8.25 6.61 -40.82 -0.27 7.98 16 37 H 0.09 2.26 6.39 -51.93 -0.33 1.93 16 38 H 0.02 0.60 7.77 -51.93 -0.40 0.20 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -31.20 313.49 -8.23 -39.43 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.20 Total: -1.64 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.77 Total: -4.02 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -1.08 Total: -50.62 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.35 Total: -8.09 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.10 Total: 20.22 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.20 -8.23 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595905656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.234 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds