Wall clock time and date at job start Mon Mar 30 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00091 * 2 1 4 4 C 1.46899 * 110.99924 * 123.95131 * 2 1 3 5 5 C 1.53001 * 109.47031 * 66.05111 * 4 2 1 6 6 C 1.53003 * 109.47404 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47342 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.51432 * 54.90024 * 7 6 5 9 9 C 1.53303 * 109.51379 * 174.99865 * 7 6 5 10 10 N 1.47146 * 108.38499 * 172.22757 * 9 7 6 11 11 C 1.36928 * 120.98469 * 129.44241 * 10 9 7 12 12 H 1.08000 * 120.00165 * 334.48410 * 11 10 9 13 13 C 1.38814 * 120.00089 * 154.47931 * 11 10 9 14 14 N 1.31616 * 120.00426 * 334.61142 * 13 11 10 15 15 Si 1.86803 * 119.99746 * 154.60861 * 13 11 10 16 16 H 1.48502 * 109.46962 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47414 * 300.00137 * 15 13 11 18 18 H 1.48504 * 109.47243 * 60.00554 * 15 13 11 19 19 C 1.47157 * 118.03632 * 309.71612 * 10 9 7 20 20 C 1.52877 * 108.60677 * 50.22792 * 19 10 9 21 21 O 1.42964 * 109.29867 * 307.93302 * 20 19 10 22 22 H 1.08990 * 109.47867 * 296.04459 * 1 2 3 23 23 H 1.09007 * 109.47229 * 56.04853 * 1 2 3 24 24 H 1.09009 * 109.47217 * 176.04439 * 1 2 3 25 25 H 1.08998 * 109.47487 * 183.94791 * 3 2 1 26 26 H 1.08995 * 109.46988 * 303.95343 * 3 2 1 27 27 H 1.09004 * 109.46731 * 63.94666 * 3 2 1 28 28 H 1.08995 * 109.47294 * 306.04845 * 4 2 1 29 29 H 1.08997 * 109.47082 * 186.04709 * 4 2 1 30 30 H 1.08995 * 109.47299 * 59.99737 * 5 4 2 31 31 H 1.08997 * 109.46859 * 299.99734 * 5 4 2 32 32 H 1.09000 * 109.46863 * 59.99240 * 6 5 4 33 33 H 1.09007 * 109.46601 * 300.00185 * 6 5 4 34 34 H 1.08999 * 109.67670 * 52.49996 * 9 7 6 35 35 H 1.09002 * 109.67742 * 291.94986 * 9 7 6 36 36 H 0.97001 * 119.99238 * 354.16152 * 14 13 11 37 37 H 1.09000 * 109.68496 * 170.01037 * 19 10 9 38 38 H 1.09001 * 109.67957 * 290.56162 * 19 10 9 39 39 H 1.08999 * 109.58365 * 187.92863 * 20 19 10 40 40 H 1.09000 * 109.37029 * 67.81670 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1792 -3.0403 2.1555 7 6 1.8147 -4.5168 1.9886 8 1 2.1711 -4.8728 1.0219 9 6 2.4680 -5.3353 3.1081 10 7 1.9543 -6.7123 3.0367 11 6 2.8073 -7.7834 3.0294 12 1 3.8187 -7.6658 2.6693 13 6 2.3722 -9.0204 3.4849 14 7 1.3863 -9.0921 4.3540 15 14 3.1859 -10.5832 2.8644 16 1 2.5430 -11.7616 3.4995 17 1 3.0322 -10.6695 1.3900 18 1 4.6297 -10.5609 3.2112 19 6 0.4970 -6.9041 2.9671 20 6 -0.0605 -6.0095 1.8599 21 8 0.3951 -4.6694 2.0609 22 1 -0.3634 0.4512 0.9232 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3634 -1.0253 -0.0709 25 1 3.0827 1.3433 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7042 1.8724 0.9233 28 1 1.5610 -0.3872 2.0628 29 1 3.0796 -0.6610 1.1757 30 1 2.0658 -2.6213 0.0452 31 1 0.5472 -2.3475 0.9323 32 1 1.7444 -2.6614 3.0805 33 1 3.2635 -2.9354 2.1940 34 1 2.2175 -4.8996 4.0754 35 1 3.5500 -5.3397 2.9761 36 1 1.0204 -8.2810 4.7402 37 1 0.2743 -7.9471 2.7419 38 1 0.0446 -6.6292 3.9200 39 1 -1.1499 -6.0314 1.8862 40 1 0.2884 -6.3714 0.8927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595905656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:22 Heat of formation + Delta-G solvation = -50.102529 kcal Electronic energy + Delta-G solvation = -18066.226455 eV Core-core repulsion = 15301.521110 eV Total energy + Delta-G solvation = -2764.705345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36513 -38.63222 -36.71317 -35.03188 -33.15989 -31.61348 -29.08938 -28.47489 -27.15700 -25.24471 -24.43828 -22.59840 -21.72118 -21.27891 -19.51654 -17.57497 -16.84821 -16.58079 -16.29359 -16.20242 -15.81861 -15.60719 -15.36559 -15.27684 -14.87863 -14.46788 -13.68596 -13.39224 -13.25603 -12.92855 -12.81119 -12.70863 -12.57033 -12.45169 -12.38555 -12.03333 -11.95133 -11.91013 -11.72491 -11.43371 -11.17863 -10.91537 -10.43938 -9.31662 -9.00490 -8.31367 -5.47075 1.57167 1.64630 1.84062 2.59842 2.81511 2.99405 3.14823 3.40461 3.82443 3.98298 4.09951 4.23148 4.26101 4.26732 4.34475 4.40740 4.50499 4.54912 4.57924 4.65287 4.69298 4.74226 4.78361 4.85341 4.85564 4.99083 5.00482 5.01954 5.05876 5.17663 5.30407 5.41606 5.72433 6.06949 6.12271 6.26355 6.29650 6.92695 7.67290 8.11886 8.92671 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051984 B = 0.004375 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.494758 B = 6398.091880 C = 6620.991946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.024 3.976 4 C 0.059 3.941 5 C -0.101 4.101 6 C -0.097 4.097 7 C 0.085 3.915 8 H 0.048 0.952 9 C 0.116 3.884 10 N -0.624 5.624 11 C -0.362 4.362 12 H 0.056 0.944 13 C -0.075 4.075 14 N -0.941 5.941 15 Si 1.118 2.882 16 H -0.290 1.290 17 H -0.278 1.278 18 H -0.274 1.274 19 C 0.122 3.878 20 C 0.058 3.942 21 O -0.389 6.389 22 H 0.025 0.975 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.253 0.747 37 H 0.058 0.942 38 H 0.007 0.993 39 H 0.112 0.888 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 17.299 -8.408 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.124 4.124 4 C -0.069 4.069 5 C -0.139 4.139 6 C -0.136 4.136 7 C 0.026 3.974 8 H 0.066 0.934 9 C -0.009 4.009 10 N -0.350 5.350 11 C -0.491 4.491 12 H 0.074 0.926 13 C -0.272 4.272 14 N -0.582 5.582 15 Si 0.942 3.058 16 H -0.216 1.216 17 H -0.204 1.204 18 H -0.200 1.200 19 C -0.004 4.004 20 C -0.020 4.020 21 O -0.308 6.308 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.025 0.975 39 H 0.130 0.870 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.170 15.584 -8.748 17.872 hybrid contribution -0.164 1.567 1.121 1.934 sum -0.334 17.151 -7.627 18.774 Atomic orbital electron populations 1.22446 0.87071 1.02405 1.00780 1.61992 1.08643 1.14801 1.43501 1.22428 1.01137 0.87929 1.00919 1.22121 1.00524 0.93117 0.91110 1.21402 1.01080 0.93870 0.97581 1.21477 1.01834 0.90824 0.99430 1.22555 0.81191 0.96511 0.97163 0.93381 1.21759 0.97912 0.84958 0.96307 1.44434 1.01786 1.01931 1.86846 1.20285 0.97163 0.91132 1.40556 0.92608 1.27314 1.00229 1.04084 0.95523 1.70911 1.30169 1.31075 1.26072 0.82826 0.75039 0.72061 0.75906 1.21639 1.20386 1.20004 1.21431 0.84250 0.98932 0.95770 1.22928 0.99625 0.82425 0.97051 1.87785 1.22299 1.27438 1.93284 0.95609 0.90397 0.91729 0.90805 0.90497 0.95488 0.94860 0.89934 0.91922 0.92348 0.91475 0.88964 0.96572 0.91707 0.93721 0.92357 0.97547 0.86994 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.32 127.69 1.19 1.58 16 2 N -0.57 -11.38 5.02 -948.86 -4.76 -16.14 16 3 C 0.02 0.36 9.57 127.69 1.22 1.59 16 4 C 0.06 1.22 4.96 86.30 0.43 1.65 16 5 C -0.10 -2.48 5.04 30.60 0.15 -2.33 16 6 C -0.10 -2.64 4.92 30.59 0.15 -2.49 16 7 C 0.08 3.06 2.78 30.69 0.09 3.15 16 8 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 9 C 0.12 5.06 6.03 86.36 0.52 5.58 16 10 N -0.62 -32.83 2.93 -698.34 -2.04 -34.88 16 11 C -0.36 -20.78 9.55 84.04 0.80 -19.97 16 12 H 0.06 3.16 7.94 -2.91 -0.02 3.14 16 13 C -0.08 -4.35 4.71 84.86 0.40 -3.95 16 14 N -0.94 -58.20 12.41 21.65 0.27 -57.94 16 15 Si 1.12 51.01 29.99 68.60 2.06 53.06 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C 0.12 6.03 4.85 86.21 0.42 6.45 16 20 C 0.06 2.28 6.97 71.94 0.50 2.78 16 21 O -0.39 -14.99 9.93 -148.98 -1.48 -16.47 16 22 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 24 H 0.06 1.32 6.47 -2.38 -0.02 1.31 16 25 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 26 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.03 0.69 8.12 -2.39 -0.02 0.67 16 29 H 0.08 1.53 8.06 -2.39 -0.02 1.52 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.57 6.24 -2.39 -0.01 1.56 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 2.72 7.96 -2.39 -0.02 2.71 16 36 H 0.25 16.07 6.61 -92.71 -0.61 15.46 16 37 H 0.06 3.17 6.39 -2.39 -0.02 3.16 16 38 H 0.01 0.34 7.77 -2.39 -0.02 0.32 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.89 313.49 1.04 -65.85 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.13 Total: 12.48 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.87 Total: -5.97 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -6.54 Total: -108.95 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.48 Total: -16.47 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.06 kcal Total: -66.89 1.04 -65.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595905656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.747 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds