Wall clock time and date at job start Mon Mar 30 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21737 * 120.00137 * 0.02562 * 13 12 2 15 15 C 1.46346 * 119.99731 * 180.02562 * 13 12 2 16 16 C 1.36739 * 125.43627 * 179.71694 * 15 13 12 17 17 C 1.37338 * 113.33159 * 179.83832 * 16 15 13 18 18 C 1.34209 * 115.04629 * 0.45660 * 17 16 15 19 19 F 1.35101 * 124.53682 * 179.78474 * 18 17 16 20 20 S 1.70610 * 110.91784 * 359.74925 * 18 17 16 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 26 26 H 1.08003 * 123.33238 * 359.97438 * 16 15 13 27 27 H 1.08008 * 122.47641 * 180.22464 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8570 1.1630 2.4119 15 6 2.6353 -0.7078 3.5519 16 6 2.8133 -0.1352 4.7808 17 6 3.2804 -1.0135 5.7277 18 6 3.4888 -2.2645 5.2885 19 9 3.9488 -3.2783 6.0540 20 16 3.0942 -2.4031 3.6345 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 2.2490 -1.6316 1.1527 26 1 2.6049 0.9043 4.9870 27 1 3.4697 -0.7184 6.7492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597000418.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:53 Heat of formation + Delta-G solvation = -51.632294 kcal Electronic energy + Delta-G solvation = -14702.936682 eV Core-core repulsion = 11888.072716 eV Total energy + Delta-G solvation = -2814.863966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.18365 -39.18852 -37.33419 -34.84837 -32.49315 -30.00022 -28.34774 -25.32606 -24.86105 -22.16892 -20.09049 -19.71219 -18.84302 -17.02237 -16.27236 -16.08032 -15.78256 -15.14435 -14.54370 -14.37604 -14.22805 -13.65064 -12.95700 -12.51279 -12.36665 -12.08710 -11.73128 -11.14183 -11.06496 -10.99215 -10.80216 -10.38373 -10.27342 -9.39836 -9.12170 -8.84389 -8.74498 -8.60105 -8.03521 -6.16456 -4.26345 0.35897 0.95255 1.60689 2.24698 3.23924 3.29238 3.30279 3.68283 3.89633 4.20745 4.33460 5.15293 5.17382 5.21051 5.33456 5.73641 6.01027 6.13522 6.77208 6.89734 7.07868 7.31374 7.46463 7.62745 7.84194 8.08518 8.50166 8.68512 8.92730 9.40816 10.89560 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.039760 B = 0.005649 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.056771 B = 4955.580659 C = 5468.787688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.574 3.426 14 O -0.537 6.537 15 C -0.236 4.236 16 C -0.055 4.055 17 C -0.177 4.177 18 C -0.039 4.039 19 F -0.104 7.104 20 S 0.223 5.777 21 H 0.028 0.972 22 H 0.016 0.984 23 H 0.093 0.907 24 H 0.266 0.734 25 H 0.386 0.614 26 H 0.163 0.837 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -6.473 12.582 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.347 5.347 13 C 0.357 3.643 14 O -0.417 6.417 15 C -0.357 4.357 16 C -0.086 4.086 17 C -0.210 4.210 18 C -0.177 4.177 19 F -0.083 7.083 20 S 0.488 5.512 21 H 0.047 0.953 22 H 0.035 0.965 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.219 0.781 26 H 0.180 0.820 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.520 -6.738 11.411 13.711 hybrid contribution 0.537 -0.048 0.508 0.741 sum 4.056 -6.786 11.919 14.303 Atomic orbital electron populations 1.22096 0.98136 0.99330 1.01137 1.18844 0.91249 0.94080 0.79495 0.92937 1.21156 1.32788 1.13403 0.90231 0.92029 1.24880 0.94711 0.94929 0.99061 1.69888 1.35614 1.22351 1.24124 0.86481 0.79212 0.79593 0.81674 1.21079 1.20103 1.20100 1.46522 1.64505 1.13264 1.10413 1.16864 0.78932 0.86517 0.81965 1.90814 1.51568 1.14833 1.84448 1.25038 1.13702 0.96677 1.00303 1.20469 0.96959 1.01446 0.89755 1.20256 1.06265 0.91527 1.02981 1.21957 1.10190 0.89165 0.96402 1.91509 1.86493 1.56887 1.73446 1.83516 1.59398 1.07762 1.00574 0.95315 0.96472 0.88892 0.92411 0.78113 0.81961 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 15 2 C 0.26 6.66 2.56 -69.09 -0.18 6.49 15 3 H 0.05 1.51 7.58 -51.92 -0.39 1.12 15 4 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 15 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 15 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.32 15 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 12 N -0.70 -14.65 5.06 -56.35 -0.29 -14.94 15 13 C 0.57 11.61 7.74 -13.00 -0.10 11.51 15 14 O -0.54 -12.73 16.50 5.16 0.09 -12.64 15 15 C -0.24 -3.70 6.44 -36.86 -0.24 -3.94 15 16 C -0.05 -0.74 10.00 -40.45 -0.40 -1.14 15 17 C -0.18 -2.05 10.16 -41.33 -0.42 -2.47 15 18 C -0.04 -0.48 8.10 29.31 0.24 -0.25 15 19 F -0.10 -1.26 17.32 2.25 0.04 -1.23 15 20 S 0.22 2.82 22.14 -107.50 -2.38 0.44 15 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 15 24 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 25 H 0.39 7.07 7.64 -40.82 -0.31 6.76 15 26 H 0.16 2.06 8.06 -52.48 -0.42 1.64 15 27 H 0.15 1.37 8.06 -52.48 -0.42 0.95 15 LS Contribution 261.24 15.07 3.94 3.94 Total: -1.00 -29.18 261.24 -6.40 -35.58 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.25 Total: 3.15 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.15 Total: -5.75 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.34 Total: -38.81 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.38 Total: 0.44 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.18 -6.40 -35.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000418.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.051 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds