Wall clock time and date at job start Mon Mar 30 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21737 * 120.00137 * 0.02562 * 13 12 2 15 15 C 1.46346 * 119.99731 * 180.02562 * 13 12 2 16 16 C 1.36739 * 125.43627 * 179.71694 * 15 13 12 17 17 C 1.37338 * 113.33159 * 179.83832 * 16 15 13 18 18 C 1.34209 * 115.04629 * 0.45660 * 17 16 15 19 19 F 1.35101 * 124.53682 * 179.78474 * 18 17 16 20 20 S 1.70610 * 110.91784 * 359.74925 * 18 17 16 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 26 26 H 1.08003 * 123.33238 * 359.97438 * 16 15 13 27 27 H 1.08008 * 122.47641 * 180.22464 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8570 1.1630 2.4119 15 6 2.6353 -0.7078 3.5519 16 6 2.8133 -0.1352 4.7808 17 6 3.2804 -1.0135 5.7277 18 6 3.4888 -2.2645 5.2885 19 9 3.9488 -3.2783 6.0540 20 16 3.0942 -2.4031 3.6345 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 2.2490 -1.6316 1.1527 26 1 2.6049 0.9043 4.9870 27 1 3.4697 -0.7184 6.7492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597000418.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:53 Heat of formation + Delta-G solvation = -70.464883 kcal Electronic energy + Delta-G solvation = -14703.753325 eV Core-core repulsion = 11888.072716 eV Total energy + Delta-G solvation = -2815.680608 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.17143 -40.75413 -38.51563 -36.71356 -34.40343 -31.62382 -29.81206 -27.35773 -26.04988 -23.68360 -21.80733 -20.96923 -20.17658 -18.55299 -17.57131 -17.43740 -17.07115 -16.85334 -16.04153 -15.83855 -15.53281 -15.13781 -14.45648 -14.25354 -13.78685 -13.43049 -13.17965 -12.97068 -12.86032 -12.73222 -12.28291 -12.16008 -12.07670 -11.14802 -11.08243 -10.60761 -10.03797 -9.81188 -9.69344 -8.18347 -6.36316 -0.75344 -0.08654 0.53484 1.17924 1.46387 1.48280 1.56111 2.17493 2.28478 2.51158 3.12343 3.20872 3.85439 4.16939 4.28733 4.72046 4.73893 4.90552 4.96264 5.06539 5.14722 5.38818 5.52889 5.64357 5.84896 6.06601 6.68162 6.78874 7.23500 7.39691 8.87936 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.039760 B = 0.005649 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.056771 B = 4955.580659 C = 5468.787688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.552 4.552 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.264 1.264 12 N -0.699 5.699 13 C 0.575 3.425 14 O -0.583 6.583 15 C -0.279 4.279 16 C -0.036 4.036 17 C -0.172 4.172 18 C -0.031 4.031 19 F -0.099 7.099 20 S 0.260 5.740 21 H 0.041 0.959 22 H 0.015 0.985 23 H 0.070 0.930 24 H 0.267 0.733 25 H 0.400 0.600 26 H 0.167 0.833 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.765 -8.450 13.591 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.590 4.590 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.188 1.188 12 N -0.347 5.347 13 C 0.361 3.639 14 O -0.466 6.466 15 C -0.400 4.400 16 C -0.069 4.069 17 C -0.204 4.204 18 C -0.169 4.169 19 F -0.078 7.078 20 S 0.526 5.474 21 H 0.060 0.940 22 H 0.034 0.966 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.235 0.765 26 H 0.184 0.816 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.526 -8.764 12.440 15.876 hybrid contribution 0.264 0.547 0.324 0.689 sum 4.790 -8.217 12.764 15.918 Atomic orbital electron populations 1.21923 0.97916 0.99692 0.99922 1.18457 0.91418 0.92144 0.81262 0.97635 1.21491 1.32980 1.13779 0.90715 0.90828 1.25785 0.94753 0.95543 1.02257 1.70037 1.36714 1.23800 1.24813 0.85385 0.78680 0.78731 0.77489 1.21121 1.19537 1.18818 1.46241 1.64916 1.13829 1.09763 1.17342 0.77700 0.86080 0.82732 1.90776 1.53476 1.16924 1.85386 1.24507 1.17363 0.99000 0.99145 1.20681 0.94994 1.01995 0.89214 1.20440 1.05331 0.90656 1.03995 1.22077 1.09100 0.89461 0.96233 1.91535 1.86295 1.56734 1.73238 1.83351 1.58582 1.04733 1.00784 0.93972 0.96628 0.91091 0.92407 0.76495 0.81566 0.79608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 9.26 71.98 0.67 -6.18 15 2 C 0.27 14.00 2.56 44.24 0.11 14.11 15 3 H 0.01 0.35 7.58 -2.38 -0.02 0.33 15 4 C -0.55 -28.98 8.73 25.60 0.22 -28.75 15 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 15 6 C 0.02 0.91 5.30 84.66 0.45 1.36 15 7 N -0.92 -51.91 11.32 21.45 0.24 -51.66 15 8 Si 0.97 41.38 29.54 68.60 2.03 43.40 15 9 H -0.29 -12.08 7.11 99.48 0.71 -11.37 15 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 11 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 12 N -0.70 -29.62 5.06 -450.38 -2.28 -31.91 15 13 C 0.57 23.63 7.74 86.35 0.67 24.30 15 14 O -0.58 -28.68 16.50 -4.47 -0.07 -28.75 15 15 C -0.28 -8.49 6.44 24.03 0.15 -8.33 15 16 C -0.04 -0.90 10.00 21.71 0.22 -0.68 15 17 C -0.17 -3.38 10.16 21.14 0.21 -3.17 15 18 C -0.03 -0.65 8.10 66.90 0.54 -0.10 15 19 F -0.10 -2.04 17.32 44.97 0.78 -1.26 15 20 S 0.26 5.98 22.14 -56.49 -1.25 4.73 15 21 H 0.04 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.01 0.73 8.14 -2.39 -0.02 0.71 15 23 H 0.07 3.89 6.07 -2.39 -0.01 3.88 15 24 H 0.27 14.31 8.31 -92.71 -0.77 13.54 15 25 H 0.40 14.45 7.64 -92.71 -0.71 13.74 15 26 H 0.17 4.00 8.06 -2.91 -0.02 3.97 15 27 H 0.19 2.47 8.06 -2.91 -0.02 2.45 15 Total: -1.00 -63.77 261.24 3.19 -60.57 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.50 Total: 12.33 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 3.25 Total: -7.45 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.04 Total: -83.57 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.07 Total: -28.75 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.25 Total: 4.73 kcal Total: -63.77 3.19 -60.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000418.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.891 kcal (2) G-P(sol) polarization free energy of solvation -63.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds