Wall clock time and date at job start Mon Mar 30 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47058 * 240.00132 * 3 2 1 5 5 H 1.48494 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46933 * 120.00609 * 3 2 1 7 7 C 1.37883 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47186 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46933 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99567 * 180.02562 * 11 10 9 13 13 O 1.21731 * 120.00314 * 359.97438 * 12 11 10 14 14 C 1.46341 * 119.99645 * 179.97438 * 12 11 10 15 15 C 1.36734 * 125.43670 * 179.97438 * 14 12 11 16 16 C 1.37345 * 113.33399 * 179.97438 * 15 14 12 17 17 C 1.34204 * 115.04329 * 0.02562 * 16 15 14 18 18 F 1.35098 * 124.53922 * 179.97438 * 17 16 15 19 19 S 1.70612 * 110.92031 * 359.97438 * 17 16 15 20 20 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46729 * 60.00464 * 9 7 2 22 22 H 1.09002 * 109.47294 * 300.00509 * 9 7 2 23 23 H 1.09001 * 109.46933 * 60.00558 * 10 9 7 24 24 H 1.08998 * 109.46915 * 300.00345 * 10 9 7 25 25 H 0.97001 * 120.00085 * 359.97438 * 11 10 9 26 26 H 1.08004 * 123.33124 * 0.25071 * 15 14 12 27 27 H 1.07997 * 122.47544 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0007 13 8 3.4038 -6.0981 -0.0003 14 6 1.4548 -7.3654 -0.0008 15 6 2.0231 -8.6090 -0.0009 16 6 1.1022 -9.6280 -0.0004 17 6 -0.1807 -9.2342 -0.0004 18 9 -1.2395 -10.0733 -0.0004 19 16 -0.2955 -7.5319 -0.0004 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8718 -3.6044 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 0.5426 -4.9308 -0.0011 26 1 3.0905 -8.7737 0.0030 27 1 1.3894 -10.6690 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597491422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:27 Heat of formation + Delta-G solvation = -77.450733 kcal Electronic energy + Delta-G solvation = -14222.922947 eV Core-core repulsion = 11406.939410 eV Total energy + Delta-G solvation = -2815.983538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.19824 -40.85917 -38.53287 -36.62531 -34.86658 -32.03511 -30.25443 -27.08278 -25.69326 -23.33746 -22.43878 -20.88057 -20.06163 -18.54417 -17.85184 -17.47229 -17.11565 -16.54024 -16.49928 -16.26567 -15.56447 -15.22850 -14.98126 -14.36823 -14.11940 -13.47908 -13.26461 -13.14872 -12.91895 -12.55002 -12.25637 -12.10493 -11.70957 -11.51450 -11.15939 -10.60420 -10.23767 -9.84602 -9.79515 -8.23577 -6.34105 -0.80112 -0.12139 0.50083 1.12763 1.43161 1.45240 1.53173 2.04915 2.09093 2.43816 3.11420 3.18878 3.69724 4.13681 4.25914 4.44503 4.47406 4.72369 4.83164 4.92916 5.12442 5.15694 5.44918 5.56330 5.77386 6.14726 6.41485 6.78597 7.03358 7.35194 8.88113 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.051096 B = 0.004315 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.853420 B = 6486.959504 C = 7014.367057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.021 3.979 10 C 0.140 3.860 11 N -0.714 5.714 12 C 0.585 3.415 13 O -0.571 6.571 14 C -0.284 4.284 15 C -0.028 4.028 16 C -0.173 4.173 17 C -0.028 4.028 18 F -0.100 7.100 19 S 0.254 5.746 20 H 0.266 0.734 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.405 0.595 26 H 0.172 0.828 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -18.352 0.001 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.017 3.983 11 N -0.364 5.364 12 C 0.372 3.628 13 O -0.453 6.453 14 C -0.405 4.405 15 C -0.061 4.061 16 C -0.206 4.206 17 C -0.166 4.166 18 F -0.079 7.079 19 S 0.519 5.481 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.240 0.760 26 H 0.190 0.810 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.366 -17.221 0.002 17.383 hybrid contribution 0.673 -0.234 0.000 0.713 sum -1.693 -17.455 0.002 17.537 Atomic orbital electron populations 1.70048 1.07551 1.28087 1.50879 1.25872 0.95793 1.03105 0.94402 0.85495 0.78286 0.78113 0.79142 1.19318 1.20695 1.19327 1.21430 0.93682 0.91762 1.51691 0.92047 1.19157 0.94272 0.91754 0.96492 1.21351 0.95085 0.81306 1.00587 1.46081 1.10690 1.05869 1.73770 1.17188 0.86626 0.82893 0.76070 1.90799 1.14218 1.87658 1.52598 1.24399 0.97394 0.97614 1.21058 1.20705 1.02528 0.88509 0.94376 1.20482 0.89526 1.03787 1.06765 1.22122 0.87790 0.94375 1.12334 1.91541 1.53354 1.68758 1.94235 1.83541 1.00816 0.96154 1.67593 0.92529 0.97218 0.97226 0.92733 0.92740 0.75960 0.81049 0.79599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.82 13.29 21.45 0.28 -53.53 15 2 C 0.01 0.40 5.46 84.66 0.46 0.86 15 3 Si 0.97 43.12 29.54 68.60 2.03 45.15 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 7 C -0.55 -30.14 9.11 25.60 0.23 -29.90 15 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 15 9 C 0.02 1.03 5.09 29.85 0.15 1.18 15 10 C 0.14 5.91 5.61 86.38 0.48 6.39 15 11 N -0.71 -25.07 5.55 -467.39 -2.59 -27.66 15 12 C 0.58 19.90 7.77 86.35 0.67 20.57 15 13 O -0.57 -23.20 16.84 -4.45 -0.07 -23.28 15 14 C -0.28 -7.27 6.44 24.03 0.15 -7.11 15 15 C -0.03 -0.58 10.00 21.71 0.22 -0.37 15 16 C -0.17 -2.89 10.16 21.14 0.21 -2.67 15 17 C -0.03 -0.53 8.10 66.90 0.54 0.01 15 18 F -0.10 -1.91 17.32 44.97 0.78 -1.14 15 19 S 0.25 5.16 22.14 -56.49 -1.25 3.91 15 20 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 21 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 22 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 23 H 0.05 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.05 2.37 8.14 -2.39 -0.02 2.35 15 25 H 0.40 12.48 7.58 -92.71 -0.70 11.78 15 26 H 0.17 3.25 8.06 -2.91 -0.02 3.23 15 27 H 0.19 1.97 8.06 -2.91 -0.02 1.95 15 Total: -1.00 -64.10 266.06 2.80 -61.30 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.50 Total: 6.30 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 3.13 Total: -11.04 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.31 Total: -81.20 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.14 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.25 Total: 3.91 kcal Total: -64.10 2.80 -61.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.156 kcal (2) G-P(sol) polarization free energy of solvation -64.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds