Wall clock time and date at job start Mon Mar 30 2020 04:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99644 * 2 1 4 4 C 1.53001 * 109.46894 * 199.94847 * 3 2 1 5 5 O 1.42898 * 109.47425 * 64.37524 * 4 3 2 6 6 C 1.42897 * 114.00399 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47295 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00199 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00442 * 180.02562 * 9 7 6 11 11 Si 1.86809 * 119.99914 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47182 * 90.00190 * 11 9 7 13 13 H 1.48501 * 109.46806 * 210.00494 * 11 9 7 14 14 H 1.48501 * 109.46607 * 329.99707 * 11 9 7 15 15 C 1.46890 * 111.00108 * 123.95318 * 2 1 3 16 16 C 1.53000 * 109.47281 * 66.04627 * 15 2 1 17 17 C 1.53932 * 113.73734 * 174.99574 * 16 15 2 18 18 N 1.47965 * 86.30076 * 138.02573 * 17 16 15 19 19 C 1.46904 * 110.99880 * 222.47125 * 18 17 16 20 20 C 1.48183 * 90.67483 * 335.41052 * 18 17 16 21 21 H 1.09004 * 109.46837 * 290.32667 * 1 2 3 22 22 H 1.08997 * 109.47405 * 50.32010 * 1 2 3 23 23 H 1.08999 * 109.46954 * 170.32490 * 1 2 3 24 24 H 1.08996 * 109.47128 * 319.94609 * 3 2 1 25 25 H 1.09006 * 109.46968 * 79.95149 * 3 2 1 26 26 H 1.08999 * 109.47169 * 184.37768 * 4 3 2 27 27 H 1.09000 * 109.47019 * 304.37422 * 4 3 2 28 28 H 1.08997 * 109.46861 * 300.00588 * 6 5 4 29 29 H 1.09007 * 109.46762 * 60.00074 * 6 5 4 30 30 H 0.96995 * 120.00076 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.47466 * 306.04973 * 15 2 1 32 32 H 1.09000 * 109.47589 * 186.04558 * 15 2 1 33 33 H 1.09005 * 112.93710 * 43.43505 * 16 15 2 34 34 H 1.08994 * 113.76438 * 252.39836 * 17 16 15 35 35 H 1.09004 * 113.75954 * 23.65610 * 17 16 15 36 36 H 1.09004 * 109.46690 * 60.00680 * 19 18 17 37 37 H 1.09003 * 109.46800 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47367 * 300.00516 * 19 18 17 39 39 H 1.08997 * 113.65733 * 270.27025 * 20 18 17 40 40 H 1.09002 * 113.92431 * 138.94939 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4441 1.3617 -0.4922 5 8 3.4818 0.9289 -1.8535 6 6 4.7959 0.8844 -2.4131 7 6 4.7171 0.4180 -3.8439 8 1 3.7592 0.1790 -4.2819 9 6 5.8678 0.2953 -4.5934 10 7 5.7990 -0.1113 -5.8422 11 14 7.5247 0.7065 -3.8350 12 1 8.0989 -0.5117 -3.2095 13 1 8.4438 1.2006 -4.8917 14 1 7.3485 1.7579 -2.8011 15 6 1.9955 -0.7659 1.1375 16 6 1.6315 -2.2426 0.9703 17 6 2.2406 -3.1568 2.0486 18 7 0.9273 -3.8377 2.0769 19 6 0.5145 -4.1281 3.4566 20 6 0.2627 -2.6149 1.5681 21 1 -0.3633 0.3570 0.9637 22 1 -0.3634 0.6561 -0.7909 23 1 -0.3633 -1.0130 -0.1727 24 1 1.3912 1.9925 -0.6613 25 1 1.9582 1.7749 1.0120 26 1 3.8595 2.3667 -0.4188 27 1 4.0319 0.6798 0.1223 28 1 5.2389 1.8797 -2.3796 29 1 5.4122 0.1928 -1.8385 30 1 6.6086 -0.1979 -6.3693 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 1.7809 -2.6044 -0.0470 34 1 3.0532 -3.7851 1.6839 35 1 2.4869 -2.6389 2.9756 36 1 0.4371 -3.1960 4.0164 37 1 -0.4540 -4.6280 3.4484 38 1 1.2540 -4.7751 3.9285 39 1 -0.0713 -1.9388 2.3551 40 1 -0.5055 -2.8083 0.8194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692689305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:56 Heat of formation + Delta-G solvation = -1.566883 kcal Electronic energy + Delta-G solvation = -17792.791947 eV Core-core repulsion = 15030.191265 eV Total energy + Delta-G solvation = -2762.600682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19907 -37.66724 -36.05946 -32.59681 -31.40549 -29.62478 -27.60964 -27.35970 -26.15605 -24.31635 -22.36062 -21.76002 -20.53603 -19.70966 -16.82728 -16.28535 -15.99223 -15.85188 -15.25421 -15.00630 -14.63875 -14.21259 -14.08927 -13.75018 -13.27314 -12.88873 -12.63420 -12.41329 -12.29309 -12.08585 -11.79886 -11.59947 -11.43926 -11.13238 -10.87443 -10.75124 -10.57122 -10.50766 -10.32949 -9.80204 -9.09643 -8.98747 -8.75749 -8.37491 -8.10381 -6.05229 -4.03289 3.28540 3.35117 3.36681 3.78602 3.92933 4.40721 4.42031 4.68165 4.71945 4.88526 5.10164 5.20928 5.22818 5.26121 5.27384 5.31705 5.37040 5.47194 5.56652 5.58420 5.61867 5.66331 5.76298 5.85285 5.88046 5.99068 6.02269 6.15978 6.18982 6.31323 6.67594 6.86322 7.07329 7.22035 7.23454 7.67510 8.13259 8.76367 9.08366 9.54764 11.08043 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.004728 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.304005 B = 5921.167285 C = 6338.976217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.525 5.525 3 C 0.060 3.940 4 C 0.064 3.936 5 O -0.364 6.364 6 C 0.168 3.832 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.064 3.936 16 C -0.106 4.106 17 C 0.004 3.996 18 N -0.485 5.485 19 C -0.010 4.010 20 C 0.003 3.997 21 H 0.016 0.984 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.036 0.964 28 H -0.001 1.001 29 H -0.004 1.004 30 H 0.265 0.735 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.347 -1.796 19.455 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.068 4.068 4 C -0.014 4.014 5 O -0.283 6.283 6 C 0.093 3.907 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.192 1.192 15 C -0.065 4.065 16 C -0.125 4.125 17 C -0.125 4.125 18 N -0.207 5.207 19 C -0.159 4.159 20 C -0.125 4.125 21 H 0.035 0.965 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.344 -2.753 18.430 20.846 hybrid contribution 1.004 1.350 1.825 2.482 sum -8.340 -1.403 20.255 21.950 Atomic orbital electron populations 1.22464 0.87649 1.02615 0.99486 1.61826 1.07260 1.13541 1.42239 1.22153 0.96521 0.89387 0.98734 1.22310 0.95019 0.97310 0.86759 1.88003 1.30138 1.87539 1.22571 1.20571 0.80888 0.94494 0.94785 1.20906 0.96114 1.44482 0.93681 0.89911 1.24766 0.98683 0.94835 0.94716 1.69879 1.28784 1.47046 1.07888 0.86864 0.84317 0.79281 0.79350 1.19975 1.20869 1.19194 1.22180 1.00713 0.92763 0.90815 1.23008 0.94572 0.94106 1.00833 1.23985 0.94122 0.96002 0.98411 1.68524 1.03927 1.29441 1.18851 1.22849 1.01944 1.00491 0.90617 1.24217 0.97912 0.91058 0.99318 0.96517 0.91395 0.91138 0.90042 0.94214 0.94328 0.94616 0.98342 0.98635 0.92461 0.95492 0.90268 0.86747 0.89025 0.91534 0.95030 0.91307 0.91455 0.91719 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 8.85 60.07 0.53 0.84 16 2 N -0.53 -7.64 4.63 -242.92 -1.12 -8.77 16 3 C 0.06 0.87 5.39 -3.82 -0.02 0.85 16 4 C 0.06 1.14 6.13 37.16 0.23 1.37 16 5 O -0.36 -8.68 10.26 -35.23 -0.36 -9.04 16 6 C 0.17 4.37 4.76 36.00 0.17 4.55 16 7 C -0.51 -15.62 9.99 -34.44 -0.34 -15.97 16 8 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 11 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 15 C 0.06 0.79 4.71 -3.83 -0.02 0.77 16 16 C -0.11 -1.27 3.61 -89.68 -0.32 -1.59 16 17 C 0.00 0.04 7.55 -2.77 -0.02 0.02 16 18 N -0.49 -5.43 6.56 -245.63 -1.61 -7.04 16 19 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 20 C 0.00 0.04 5.94 -2.64 -0.02 0.02 16 21 H 0.02 0.17 8.07 -51.93 -0.42 -0.25 16 22 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 23 H 0.07 0.80 5.94 -51.93 -0.31 0.50 16 24 H 0.08 1.19 7.73 -51.93 -0.40 0.79 16 25 H 0.04 0.47 8.00 -51.93 -0.42 0.06 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.61 6.69 -51.93 -0.35 0.26 16 28 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 29 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 30 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.03 0.30 7.76 -51.93 -0.40 -0.11 16 32 H 0.08 1.04 6.59 -51.93 -0.34 0.70 16 33 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 36 H 0.03 0.25 7.62 -51.93 -0.40 -0.14 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 40 H 0.09 0.93 7.46 -51.93 -0.39 0.54 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -32.75 316.45 -8.64 -41.39 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -7.09 Total: -4.40 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 0.67 Total: -6.61 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -1.96 Total: -43.17 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.36 Total: -9.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.75 -8.64 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692689305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.823 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds