Wall clock time and date at job start Mon Mar 30 2020 04:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99644 * 2 1 4 4 C 1.53001 * 109.46894 * 199.94847 * 3 2 1 5 5 O 1.42898 * 109.47425 * 64.37524 * 4 3 2 6 6 C 1.42897 * 114.00399 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47295 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00199 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00442 * 180.02562 * 9 7 6 11 11 Si 1.86809 * 119.99914 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47182 * 90.00190 * 11 9 7 13 13 H 1.48501 * 109.46806 * 210.00494 * 11 9 7 14 14 H 1.48501 * 109.46607 * 329.99707 * 11 9 7 15 15 C 1.46890 * 111.00108 * 123.95318 * 2 1 3 16 16 C 1.53000 * 109.47281 * 66.04627 * 15 2 1 17 17 C 1.53932 * 113.73734 * 174.99574 * 16 15 2 18 18 N 1.47965 * 86.30076 * 138.02573 * 17 16 15 19 19 C 1.46904 * 110.99880 * 222.47125 * 18 17 16 20 20 C 1.48183 * 90.67483 * 335.41052 * 18 17 16 21 21 H 1.09004 * 109.46837 * 290.32667 * 1 2 3 22 22 H 1.08997 * 109.47405 * 50.32010 * 1 2 3 23 23 H 1.08999 * 109.46954 * 170.32490 * 1 2 3 24 24 H 1.08996 * 109.47128 * 319.94609 * 3 2 1 25 25 H 1.09006 * 109.46968 * 79.95149 * 3 2 1 26 26 H 1.08999 * 109.47169 * 184.37768 * 4 3 2 27 27 H 1.09000 * 109.47019 * 304.37422 * 4 3 2 28 28 H 1.08997 * 109.46861 * 300.00588 * 6 5 4 29 29 H 1.09007 * 109.46762 * 60.00074 * 6 5 4 30 30 H 0.96995 * 120.00076 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.47466 * 306.04973 * 15 2 1 32 32 H 1.09000 * 109.47589 * 186.04558 * 15 2 1 33 33 H 1.09005 * 112.93710 * 43.43505 * 16 15 2 34 34 H 1.08994 * 113.76438 * 252.39836 * 17 16 15 35 35 H 1.09004 * 113.75954 * 23.65610 * 17 16 15 36 36 H 1.09004 * 109.46690 * 60.00680 * 19 18 17 37 37 H 1.09003 * 109.46800 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47367 * 300.00516 * 19 18 17 39 39 H 1.08997 * 113.65733 * 270.27025 * 20 18 17 40 40 H 1.09002 * 113.92431 * 138.94939 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4441 1.3617 -0.4922 5 8 3.4818 0.9289 -1.8535 6 6 4.7959 0.8844 -2.4131 7 6 4.7171 0.4180 -3.8439 8 1 3.7592 0.1790 -4.2819 9 6 5.8678 0.2953 -4.5934 10 7 5.7990 -0.1113 -5.8422 11 14 7.5247 0.7065 -3.8350 12 1 8.0989 -0.5117 -3.2095 13 1 8.4438 1.2006 -4.8917 14 1 7.3485 1.7579 -2.8011 15 6 1.9955 -0.7659 1.1375 16 6 1.6315 -2.2426 0.9703 17 6 2.2406 -3.1568 2.0486 18 7 0.9273 -3.8377 2.0769 19 6 0.5145 -4.1281 3.4566 20 6 0.2627 -2.6149 1.5681 21 1 -0.3633 0.3570 0.9637 22 1 -0.3634 0.6561 -0.7909 23 1 -0.3633 -1.0130 -0.1727 24 1 1.3912 1.9925 -0.6613 25 1 1.9582 1.7749 1.0120 26 1 3.8595 2.3667 -0.4188 27 1 4.0319 0.6798 0.1223 28 1 5.2389 1.8797 -2.3796 29 1 5.4122 0.1928 -1.8385 30 1 6.6086 -0.1979 -6.3693 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 1.7809 -2.6044 -0.0470 34 1 3.0532 -3.7851 1.6839 35 1 2.4869 -2.6389 2.9756 36 1 0.4371 -3.1960 4.0164 37 1 -0.4540 -4.6280 3.4484 38 1 1.2540 -4.7751 3.9285 39 1 -0.0713 -1.9388 2.3551 40 1 -0.5055 -2.8083 0.8194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692689305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:55 Heat of formation + Delta-G solvation = -28.010980 kcal Electronic energy + Delta-G solvation = -17793.938649 eV Core-core repulsion = 15030.191265 eV Total energy + Delta-G solvation = -2763.747384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06641 -39.02278 -37.50684 -34.83208 -32.38599 -31.04370 -29.38837 -28.34078 -27.00134 -25.37178 -23.92286 -23.37837 -21.62703 -20.58961 -19.02348 -17.50286 -17.24823 -17.04649 -16.49728 -16.25873 -16.06958 -15.55327 -15.26481 -14.91418 -14.66112 -14.31633 -13.80234 -13.63618 -13.52600 -13.23423 -13.04152 -12.79855 -12.74489 -12.49917 -12.31273 -12.06619 -11.88372 -11.76476 -11.47719 -11.40409 -11.23778 -10.89669 -10.25202 -9.77702 -9.10829 -8.34984 -6.42426 1.33639 1.37323 1.48091 2.31114 2.92718 2.97515 2.98434 3.19685 3.54676 3.81203 4.13990 4.17676 4.24894 4.33301 4.35166 4.42314 4.48081 4.54906 4.55310 4.58969 4.65305 4.67503 4.71799 4.78204 4.84093 4.94584 4.96977 4.97537 5.05833 5.09911 5.33901 5.37013 5.47513 5.97290 6.09442 6.20635 6.26568 6.62108 6.85275 7.22516 8.82531 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.004728 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.304005 B = 5921.167285 C = 6338.976217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.560 5.560 3 C 0.065 3.935 4 C 0.054 3.946 5 O -0.393 6.393 6 C 0.180 3.820 7 C -0.543 4.543 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.944 5.944 11 Si 0.957 3.043 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.245 1.245 15 C 0.070 3.930 16 C -0.111 4.111 17 C 0.010 3.990 18 N -0.509 5.509 19 C -0.010 4.010 20 C 0.014 3.986 21 H 0.040 0.960 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.010 0.990 29 H 0.006 0.994 30 H 0.272 0.728 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -0.922 22.432 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.284 5.284 3 C -0.062 4.062 4 C -0.023 4.023 5 O -0.313 6.313 6 C 0.104 3.896 7 C -0.581 4.581 8 H 0.046 0.954 9 C -0.186 4.186 10 N -0.584 5.584 11 Si 0.778 3.222 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.168 1.168 15 C -0.058 4.058 16 C -0.130 4.130 17 C -0.119 4.119 18 N -0.232 5.232 19 C -0.158 4.158 20 C -0.114 4.114 21 H 0.058 0.942 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.524 -1.878 21.427 23.137 hybrid contribution 0.614 1.028 0.863 1.476 sum -7.910 -0.850 22.290 23.667 Atomic orbital electron populations 1.22428 0.86281 1.02614 1.00474 1.61755 1.08808 1.13878 1.43981 1.22101 0.94214 0.89660 1.00246 1.22704 0.97803 0.98151 0.83664 1.87958 1.28953 1.88203 1.26155 1.20261 0.82282 0.94750 0.92281 1.21178 0.94411 1.45903 0.96571 0.95447 1.25860 1.03740 0.93955 0.95025 1.70041 1.30670 1.47870 1.09806 0.85592 0.77517 0.80075 0.79032 1.18475 1.19768 1.16827 1.22141 1.00126 0.92498 0.91059 1.22881 0.96387 0.94276 0.99452 1.23968 0.93845 0.95498 0.98574 1.68499 1.04183 1.29908 1.20584 1.22884 1.02286 1.01247 0.89433 1.24164 0.96787 0.91033 0.99434 0.94150 0.92175 0.91165 0.90672 0.90658 0.92666 0.93718 0.97243 0.97653 0.91850 0.93131 0.91294 0.90291 0.89871 0.89609 0.93822 0.90884 0.90937 0.89923 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 8.85 127.69 1.13 1.80 16 2 N -0.56 -15.69 4.63 -922.45 -4.27 -19.96 16 3 C 0.07 1.77 5.39 86.30 0.47 2.24 16 4 C 0.05 1.83 6.13 71.98 0.44 2.27 16 5 O -0.39 -18.90 10.26 -148.98 -1.53 -20.42 16 6 C 0.18 9.32 4.76 71.23 0.34 9.66 16 7 C -0.54 -34.13 9.99 25.60 0.26 -33.87 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C 0.01 0.71 5.47 84.65 0.46 1.18 16 10 N -0.94 -60.75 13.96 21.45 0.30 -60.45 16 11 Si 0.96 44.20 27.47 68.60 1.88 46.08 16 12 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 15 C 0.07 1.61 4.71 86.31 0.41 2.01 16 16 C -0.11 -2.59 3.61 -10.15 -0.04 -2.62 16 17 C 0.01 0.21 7.55 86.40 0.65 0.86 16 18 N -0.51 -10.70 6.56 -931.05 -6.11 -16.81 16 19 C -0.01 -0.15 9.65 127.69 1.23 1.08 16 20 C 0.01 0.27 5.94 86.36 0.51 0.79 16 21 H 0.04 0.71 8.07 -2.38 -0.02 0.69 16 22 H 0.06 1.42 7.83 -2.39 -0.02 1.40 16 23 H 0.07 1.56 5.94 -2.39 -0.01 1.55 16 24 H 0.07 2.11 7.73 -2.39 -0.02 2.09 16 25 H 0.08 1.52 8.00 -2.38 -0.02 1.50 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.43 6.69 -2.39 -0.02 1.41 16 28 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 29 H 0.01 0.28 7.57 -2.38 -0.02 0.27 16 30 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.05 0.93 7.76 -2.39 -0.02 0.91 16 32 H 0.07 1.70 6.59 -2.39 -0.02 1.69 16 33 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.39 7.88 -2.38 -0.02 1.37 16 36 H 0.04 0.57 7.62 -2.38 -0.02 0.55 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.30 7.37 -2.39 -0.02 1.29 16 40 H 0.08 1.70 7.46 -2.39 -0.02 1.68 16 Total: -1.00 -73.11 316.45 -2.94 -76.05 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.93 Total: 10.12 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 5.86 Total: -14.61 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -10.08 Total: -97.22 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.53 Total: -20.42 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -73.11 -2.94 -76.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692689305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.040 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds