Wall clock time and date at job start Mon Mar 30 2020 04:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99875 * 2 1 4 4 C 1.53004 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46863 * 64.99979 * 4 3 2 6 6 C 1.36936 * 120.00058 * 273.18177 * 5 4 3 7 7 H 1.08002 * 119.99418 * 35.94695 * 6 5 4 8 8 C 1.38813 * 120.00130 * 215.93405 * 6 5 4 9 9 N 1.31617 * 119.99640 * 21.22234 * 8 6 5 10 10 Si 1.86800 * 120.00045 * 201.21601 * 8 6 5 11 11 H 1.48496 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46951 * 120.00304 * 10 8 6 13 13 H 1.48499 * 109.47063 * 240.00666 * 10 8 6 14 14 C 1.46506 * 119.99856 * 93.18481 * 5 4 3 15 15 C 1.52988 * 109.47210 * 269.99772 * 14 5 4 16 16 H 1.09004 * 110.27522 * 55.63821 * 15 14 5 17 17 C 1.54596 * 110.31152 * 177.83053 * 15 14 5 18 18 C 1.54938 * 102.92622 * 140.87469 * 17 15 14 19 19 N 1.48540 * 103.22329 * 322.58872 * 18 17 15 20 20 C 1.46900 * 110.99691 * 159.72055 * 19 18 17 21 21 C 1.47897 * 105.82103 * 39.20642 * 19 18 17 22 22 H 1.09000 * 109.47279 * 300.00127 * 1 2 3 23 23 H 1.09004 * 109.47520 * 59.99854 * 1 2 3 24 24 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47500 * 60.00295 * 3 2 1 26 26 H 1.09006 * 109.47239 * 299.99571 * 3 2 1 27 27 H 1.08998 * 109.47350 * 305.00026 * 4 3 2 28 28 H 1.09001 * 109.47513 * 184.99744 * 4 3 2 29 29 H 0.97001 * 119.99632 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.46926 * 149.99807 * 14 5 4 31 31 H 1.09002 * 109.46825 * 30.00685 * 14 5 4 32 32 H 1.08995 * 110.72819 * 259.23551 * 17 15 14 33 33 H 1.09001 * 110.72350 * 22.51813 * 17 15 14 34 34 H 1.09001 * 110.66676 * 81.01894 * 18 17 15 35 35 H 1.08994 * 110.66817 * 204.15719 * 18 17 15 36 36 H 1.09003 * 109.47016 * 302.59855 * 20 19 18 37 37 H 1.08997 * 109.47332 * 62.60100 * 20 19 18 38 38 H 1.08998 * 109.47289 * 182.60492 * 20 19 18 39 39 H 1.09001 * 109.91721 * 215.31603 * 21 19 18 40 40 H 1.09000 * 109.92110 * 94.01825 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0342 -0.7997 -1.3576 7 1 3.2940 -1.4114 -0.8633 8 6 5.0447 -1.3960 -2.0993 9 7 6.1558 -0.7357 -2.3480 10 14 4.8277 -3.1357 -2.7442 11 1 3.4992 -3.6547 -2.3308 12 1 4.9167 -3.1288 -4.2264 13 1 5.8945 -4.0064 -2.1882 14 6 4.3531 1.4036 -2.3928 15 6 3.1205 1.6731 -3.2580 16 1 2.3268 2.1167 -2.6569 17 6 3.4860 2.6026 -4.4380 18 6 2.6678 2.0096 -5.6126 19 7 2.7447 0.5454 -5.3751 20 6 1.6637 -0.1592 -6.0772 21 6 2.6301 0.3677 -3.9113 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8901 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1765 0.0889 29 1 6.8620 -1.1526 -2.8660 30 1 5.1091 0.8904 -2.9872 31 1 4.7564 2.3491 -2.0301 32 1 3.1775 3.6274 -4.2318 33 1 4.5542 2.5555 -4.6496 34 1 1.6338 2.3520 -5.5726 35 1 3.1234 2.2688 -6.5682 36 1 0.7013 0.2353 -5.7515 37 1 1.7719 -0.0120 -7.1518 38 1 1.7158 -1.2238 -5.8493 39 1 3.2537 -0.4660 -3.5885 40 1 1.5906 0.1843 -3.6398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700255712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:26 Heat of formation + Delta-G solvation = -16.361093 kcal Electronic energy + Delta-G solvation = -19235.771535 eV Core-core repulsion = 16472.529329 eV Total energy + Delta-G solvation = -2763.242207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.51572 -37.24556 -35.23622 -31.94098 -31.40250 -29.01467 -27.76082 -25.99709 -25.74372 -24.20609 -22.63380 -20.68665 -20.23621 -19.09703 -16.74837 -15.75565 -15.47385 -15.26608 -14.85822 -14.41289 -14.31009 -13.64928 -13.48291 -13.20653 -12.63439 -12.55819 -12.01383 -11.84676 -11.59969 -11.29544 -11.02960 -10.91528 -10.84803 -10.70836 -10.65863 -10.44994 -10.34342 -9.98963 -9.70094 -9.61269 -9.45231 -8.90702 -8.31142 -7.80608 -6.44025 -5.63110 -3.17460 3.47099 3.56508 3.58341 4.50943 4.60487 4.63984 5.27087 5.32312 5.47996 5.55666 5.56963 5.64727 5.69788 5.80426 5.82433 5.86492 5.97157 6.01779 6.09308 6.14340 6.17853 6.32366 6.38807 6.41411 6.49982 6.52452 6.75221 6.91515 6.97181 7.06252 7.38982 7.56481 7.63917 7.88661 7.90458 8.08275 8.70461 9.36131 9.96591 10.54185 11.37109 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.012442 C = 0.009173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.672782 B = 2249.954748 C = 3051.569132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.043 3.957 4 C 0.145 3.855 5 N -0.578 5.578 6 C -0.237 4.237 7 H 0.069 0.931 8 C 0.009 3.991 9 N -0.890 5.890 10 Si 0.885 3.115 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.292 1.292 14 C 0.150 3.850 15 C -0.110 4.110 16 H 0.051 0.949 17 C -0.120 4.120 18 C 0.035 3.965 19 N -0.524 5.524 20 C 0.020 3.980 21 C 0.049 3.951 22 H 0.027 0.973 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.252 0.748 30 H 0.106 0.894 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.019 0.981 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 5.858 -1.924 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.037 4.037 4 C 0.017 3.983 5 N -0.297 5.297 6 C -0.367 4.367 7 H 0.087 0.913 8 C -0.190 4.190 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.220 1.220 14 C 0.024 3.976 15 C -0.132 4.132 16 H 0.069 0.931 17 C -0.158 4.158 18 C -0.093 4.093 19 N -0.248 5.248 20 C -0.129 4.129 21 C -0.078 4.078 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.000 5.390 -2.188 9.891 hybrid contribution -1.385 -0.275 -0.190 1.424 sum -9.385 5.115 -2.378 10.949 Atomic orbital electron populations 1.22619 0.83769 1.01619 0.98527 1.88118 1.17104 1.27944 1.94924 1.23560 0.98449 0.84223 0.97431 1.20900 0.89264 0.96732 0.91379 1.43754 1.76523 1.02851 1.06563 1.19170 1.06231 0.81734 1.29553 0.91290 1.25082 0.94393 0.97072 1.02474 1.69958 1.04492 1.37401 1.41462 0.86502 0.77659 0.85370 0.79007 1.20129 1.21209 1.21954 1.21108 0.94155 0.92863 0.89521 1.22716 1.00828 0.93782 0.95855 0.93091 1.22526 1.00680 0.97731 0.94903 1.23184 0.97846 0.89223 0.99078 1.64856 1.42878 1.07475 1.09572 1.22441 0.92067 0.99657 0.98759 1.23075 0.99260 1.01062 0.84407 0.95419 0.95218 0.90580 0.95675 0.94444 0.92790 0.93205 0.93798 0.87645 0.96177 0.92361 0.90720 0.94973 0.91130 0.96292 0.92190 0.91665 0.86846 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.31 9.47 -35.23 -0.33 -7.64 16 3 C 0.04 0.79 6.28 37.16 0.23 1.02 16 4 C 0.14 3.03 6.16 -4.04 -0.02 3.00 16 5 N -0.58 -14.01 2.38 -173.23 -0.41 -14.42 16 6 C -0.24 -6.38 7.48 -15.06 -0.11 -6.49 16 7 H 0.07 1.95 7.13 -52.49 -0.37 1.58 16 8 C 0.01 0.25 4.04 -17.43 -0.07 0.18 16 9 N -0.89 -25.55 11.34 55.49 0.63 -24.92 16 10 Si 0.88 22.11 29.37 -169.99 -4.99 17.12 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 C 0.15 3.45 4.62 -4.04 -0.02 3.43 16 15 C -0.11 -2.21 3.24 -89.27 -0.29 -2.50 16 16 H 0.05 1.00 6.25 -51.93 -0.32 0.68 16 17 C -0.12 -2.05 6.61 -24.87 -0.16 -2.22 16 18 C 0.03 0.57 6.56 -1.89 -0.01 0.56 16 19 N -0.52 -10.07 5.55 -238.71 -1.33 -11.39 16 20 C 0.02 0.32 9.40 60.06 0.56 0.89 16 21 C 0.05 1.03 6.03 -2.76 -0.02 1.02 16 22 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.69 6.25 -51.93 -0.32 0.37 16 27 H 0.05 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.11 2.81 5.38 -51.93 -0.28 2.53 16 31 H 0.02 0.44 7.87 -51.93 -0.41 0.03 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.34 7.86 -51.93 -0.41 0.93 16 34 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.11 2.86 4.86 -51.93 -0.25 2.60 16 40 H 0.02 0.49 7.73 -51.93 -0.40 0.08 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -29.28 309.52 -7.51 -36.80 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.95 Total: -0.69 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 1.20 Total: 0.49 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -1.11 Total: -50.74 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.33 Total: -7.64 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.99 Total: 17.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.28 -7.51 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700255712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.438 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds