Wall clock time and date at job start Mon Mar 30 2020 04:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99875 * 2 1 4 4 C 1.53004 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46863 * 64.99979 * 4 3 2 6 6 C 1.36936 * 120.00058 * 273.18177 * 5 4 3 7 7 H 1.08002 * 119.99418 * 35.94695 * 6 5 4 8 8 C 1.38813 * 120.00130 * 215.93405 * 6 5 4 9 9 N 1.31617 * 119.99640 * 21.22234 * 8 6 5 10 10 Si 1.86800 * 120.00045 * 201.21601 * 8 6 5 11 11 H 1.48496 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46951 * 120.00304 * 10 8 6 13 13 H 1.48499 * 109.47063 * 240.00666 * 10 8 6 14 14 C 1.46506 * 119.99856 * 93.18481 * 5 4 3 15 15 C 1.52988 * 109.47210 * 269.99772 * 14 5 4 16 16 H 1.09004 * 110.27522 * 55.63821 * 15 14 5 17 17 C 1.54596 * 110.31152 * 177.83053 * 15 14 5 18 18 C 1.54938 * 102.92622 * 140.87469 * 17 15 14 19 19 N 1.48540 * 103.22329 * 322.58872 * 18 17 15 20 20 C 1.46900 * 110.99691 * 159.72055 * 19 18 17 21 21 C 1.47897 * 105.82103 * 39.20642 * 19 18 17 22 22 H 1.09000 * 109.47279 * 300.00127 * 1 2 3 23 23 H 1.09004 * 109.47520 * 59.99854 * 1 2 3 24 24 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47500 * 60.00295 * 3 2 1 26 26 H 1.09006 * 109.47239 * 299.99571 * 3 2 1 27 27 H 1.08998 * 109.47350 * 305.00026 * 4 3 2 28 28 H 1.09001 * 109.47513 * 184.99744 * 4 3 2 29 29 H 0.97001 * 119.99632 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.46926 * 149.99807 * 14 5 4 31 31 H 1.09002 * 109.46825 * 30.00685 * 14 5 4 32 32 H 1.08995 * 110.72819 * 259.23551 * 17 15 14 33 33 H 1.09001 * 110.72350 * 22.51813 * 17 15 14 34 34 H 1.09001 * 110.66676 * 81.01894 * 18 17 15 35 35 H 1.08994 * 110.66817 * 204.15719 * 18 17 15 36 36 H 1.09003 * 109.47016 * 302.59855 * 20 19 18 37 37 H 1.08997 * 109.47332 * 62.60100 * 20 19 18 38 38 H 1.08998 * 109.47289 * 182.60492 * 20 19 18 39 39 H 1.09001 * 109.91721 * 215.31603 * 21 19 18 40 40 H 1.09000 * 109.92110 * 94.01825 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0342 -0.7997 -1.3576 7 1 3.2940 -1.4114 -0.8633 8 6 5.0447 -1.3960 -2.0993 9 7 6.1558 -0.7357 -2.3480 10 14 4.8277 -3.1357 -2.7442 11 1 3.4992 -3.6547 -2.3308 12 1 4.9167 -3.1288 -4.2264 13 1 5.8945 -4.0064 -2.1882 14 6 4.3531 1.4036 -2.3928 15 6 3.1205 1.6731 -3.2580 16 1 2.3268 2.1167 -2.6569 17 6 3.4860 2.6026 -4.4380 18 6 2.6678 2.0096 -5.6126 19 7 2.7447 0.5454 -5.3751 20 6 1.6637 -0.1592 -6.0772 21 6 2.6301 0.3677 -3.9113 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8901 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1765 0.0889 29 1 6.8620 -1.1526 -2.8660 30 1 5.1091 0.8904 -2.9872 31 1 4.7564 2.3491 -2.0301 32 1 3.1775 3.6274 -4.2318 33 1 4.5542 2.5555 -4.6496 34 1 1.6338 2.3520 -5.5726 35 1 3.1234 2.2688 -6.5682 36 1 0.7013 0.2353 -5.7515 37 1 1.7719 -0.0120 -7.1518 38 1 1.7158 -1.2238 -5.8493 39 1 3.2537 -0.4660 -3.5885 40 1 1.5906 0.1843 -3.6398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700255712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:25 Heat of formation + Delta-G solvation = -36.235389 kcal Electronic energy + Delta-G solvation = -19236.633350 eV Core-core repulsion = 16472.529329 eV Total energy + Delta-G solvation = -2764.104021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04518 -38.71472 -36.97828 -33.67778 -33.13906 -30.55027 -29.36410 -27.68145 -27.09079 -25.85115 -24.27218 -22.27269 -21.78352 -20.74114 -18.65084 -17.23347 -17.12337 -16.72690 -16.31433 -16.25997 -15.74536 -15.32239 -15.06092 -14.90180 -14.25449 -13.91659 -13.52541 -13.33509 -13.13342 -12.97978 -12.75237 -12.66916 -12.38102 -12.31586 -12.19297 -12.06608 -12.00648 -11.81057 -11.38949 -11.30416 -11.23914 -10.34590 -10.33174 -9.25547 -8.43617 -7.69357 -5.26363 1.43561 1.49259 1.56003 2.57344 3.15234 3.24953 3.36709 3.71091 3.95120 4.02336 4.17422 4.36721 4.44678 4.46307 4.52589 4.54844 4.60261 4.67262 4.71543 4.76029 4.81886 4.86332 4.91774 4.92157 4.96387 5.05282 5.22062 5.27281 5.30280 5.42867 5.70299 5.86057 5.96217 6.14318 6.24609 6.52637 6.65568 7.31616 8.00848 8.51499 9.25747 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.012442 C = 0.009173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.672782 B = 2249.954748 C = 3051.569132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.139 3.861 5 N -0.592 5.592 6 C -0.223 4.223 7 H 0.052 0.948 8 C -0.031 4.031 9 N -0.917 5.917 10 Si 0.930 3.070 11 H -0.274 1.274 12 H -0.292 1.292 13 H -0.294 1.294 14 C 0.154 3.846 15 C -0.102 4.102 16 H 0.059 0.941 17 C -0.114 4.114 18 C 0.040 3.960 19 N -0.549 5.549 20 C 0.021 3.979 21 C 0.056 3.944 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.246 0.754 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.031 0.969 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 7.324 -2.370 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.013 3.987 5 N -0.312 5.312 6 C -0.354 4.354 7 H 0.070 0.930 8 C -0.227 4.227 9 N -0.562 5.562 10 Si 0.760 3.240 11 H -0.198 1.198 12 H -0.219 1.219 13 H -0.221 1.221 14 C 0.028 3.972 15 C -0.124 4.124 16 H 0.077 0.923 17 C -0.153 4.153 18 C -0.088 4.088 19 N -0.274 5.274 20 C -0.128 4.128 21 C -0.071 4.071 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.849 6.869 -2.624 12.291 hybrid contribution -0.881 -0.703 -0.012 1.127 sum -10.730 6.166 -2.636 12.654 Atomic orbital electron populations 1.22786 0.81353 1.02677 0.99944 1.88054 1.19850 1.28946 1.95249 1.23333 0.96226 0.84076 0.98954 1.21052 0.91362 0.97039 0.89230 1.43912 1.76841 1.02216 1.08215 1.19078 1.04907 0.83117 1.28312 0.93030 1.25488 0.94439 0.99364 1.03431 1.70063 1.05070 1.38378 1.42715 0.85778 0.77395 0.82827 0.77971 1.19843 1.21920 1.22134 1.20960 0.94772 0.92215 0.89228 1.22527 0.99364 0.94081 0.96404 0.92258 1.22514 1.00167 0.98748 0.93865 1.23238 0.98893 0.87165 0.99458 1.64768 1.44712 1.09748 1.08171 1.22474 0.91791 0.98731 0.99808 1.22775 0.97868 1.00153 0.86296 0.92959 0.94661 0.89873 0.92477 0.94295 0.94541 0.91231 0.94432 0.91254 0.95506 0.89302 0.92064 0.93117 0.89303 0.95041 0.89844 0.92857 0.91174 0.96342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -15.70 9.47 -148.98 -1.41 -17.11 16 3 C 0.05 1.85 6.28 71.98 0.45 2.30 16 4 C 0.14 5.72 6.16 86.38 0.53 6.26 16 5 N -0.59 -28.85 2.38 -701.99 -1.67 -30.52 16 6 C -0.22 -12.27 7.48 84.03 0.63 -11.64 16 7 H 0.05 2.99 7.13 -2.91 -0.02 2.97 16 8 C -0.03 -1.75 4.04 84.86 0.34 -1.40 16 9 N -0.92 -54.21 11.34 21.65 0.25 -53.96 16 10 Si 0.93 46.75 29.37 68.60 2.01 48.77 16 11 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 13 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 14 C 0.15 7.12 4.62 86.37 0.40 7.52 16 15 C -0.10 -3.98 3.24 -9.92 -0.03 -4.01 16 16 H 0.06 2.20 6.25 -2.38 -0.01 2.18 16 17 C -0.11 -3.64 6.61 31.80 0.21 -3.43 16 18 C 0.04 1.18 6.56 86.65 0.57 1.75 16 19 N -0.55 -20.32 5.55 -909.15 -5.05 -25.37 16 20 C 0.02 0.62 9.40 127.69 1.20 1.82 16 21 C 0.06 2.39 6.03 86.45 0.52 2.91 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.04 1.35 6.25 -2.38 -0.01 1.33 16 27 H 0.04 1.60 8.07 -2.39 -0.02 1.58 16 28 H 0.07 2.54 7.86 -2.39 -0.02 2.52 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.07 3.79 5.38 -2.39 -0.01 3.78 16 31 H 0.03 1.16 7.87 -2.39 -0.02 1.14 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.12 7.86 -2.39 -0.02 2.10 16 34 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 3.61 4.86 -2.39 -0.01 3.59 16 40 H 0.02 0.77 7.73 -2.39 -0.02 0.75 16 Total: -1.00 -64.14 309.52 1.19 -62.95 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.99 Total: 11.10 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.07 Total: 4.15 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -6.47 Total: -109.85 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.41 Total: -17.11 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.01 Total: 48.77 kcal Total: -64.14 1.19 -62.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700255712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.715 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds