Wall clock time and date at job start Mon Mar 30 2020 04:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48564 * 111.00077 * 2 1 4 4 C 1.54378 * 104.59344 * 200.96009 * 3 2 1 5 5 C 1.54262 * 105.06087 * 23.84761 * 4 3 2 6 6 O 1.42900 * 110.32703 * 241.00026 * 5 4 3 7 7 C 1.53010 * 110.32172 * 118.89786 * 5 4 3 8 8 N 1.46895 * 109.47023 * 185.00198 * 7 5 4 9 9 C 1.46904 * 111.00014 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.46983 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.48558 * 111.00240 * 244.57773 * 2 1 3 21 21 H 1.09001 * 109.46750 * 59.87384 * 1 2 3 22 22 H 1.08995 * 109.47142 * 179.87679 * 1 2 3 23 23 H 1.09003 * 109.46999 * 299.88025 * 1 2 3 24 24 H 1.08997 * 110.41479 * 82.18115 * 3 2 1 25 25 H 1.08997 * 110.40980 * 319.73588 * 3 2 1 26 26 H 1.09001 * 110.32184 * 264.95744 * 4 3 2 27 27 H 1.08998 * 110.32631 * 142.74972 * 4 3 2 28 28 H 0.96703 * 114.00003 * 178.57379 * 6 5 4 29 29 H 1.08999 * 109.46874 * 65.00063 * 7 5 4 30 30 H 1.09000 * 109.46689 * 304.99946 * 7 5 4 31 31 H 1.00901 * 111.00513 * 56.04075 * 8 7 5 32 32 H 1.08995 * 109.46789 * 59.99756 * 9 8 7 33 33 H 1.08998 * 109.46713 * 300.00198 * 9 8 7 34 34 H 1.09000 * 109.47849 * 59.99743 * 10 9 8 35 35 H 1.09007 * 109.47288 * 299.99336 * 10 9 8 36 36 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 37 37 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 38 38 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 39 39 H 1.08999 * 110.40799 * 40.26010 * 20 2 1 40 40 H 1.09001 * 110.41319 * 277.82551 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3870 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3584 6 8 4.3694 -0.9910 -0.8048 7 6 3.7948 0.2398 -2.8183 8 7 3.6728 -0.9923 -3.6088 9 6 4.0042 -0.7480 -5.0190 10 6 3.8654 -2.0511 -5.8086 11 6 4.2111 -1.7968 -7.2772 12 6 4.0738 -3.0801 -8.0551 13 1 3.7707 -3.9866 -7.5522 14 6 4.3411 -3.0984 -9.4076 15 7 4.7105 -1.9946 -10.0199 16 14 4.1785 -4.6909 -10.3703 17 1 2.7944 -4.8133 -10.8945 18 1 5.1381 -4.6844 -11.5036 19 1 4.4734 -5.8409 -9.4784 20 6 2.0015 -0.5954 -1.2526 21 1 -0.3633 0.5158 -0.8889 22 1 -0.3633 -1.0276 -0.0022 23 1 -0.3633 0.5120 0.8911 24 1 2.0080 1.7917 1.0120 25 1 1.4099 2.0212 -0.6602 26 1 4.1483 1.1748 0.2935 27 1 3.6938 2.0995 -1.1699 28 1 4.3963 -1.8387 -1.2693 29 1 4.8182 0.6101 -2.8781 30 1 3.1123 0.9930 -3.2118 31 1 2.7503 -1.3907 -3.5175 32 1 5.0291 -0.3848 -5.0937 33 1 3.3235 -0.0014 -5.4280 34 1 2.8403 -2.4139 -5.7338 35 1 4.5459 -2.7980 -5.3997 36 1 5.2363 -1.4341 -7.3516 37 1 3.5308 -1.0497 -7.6864 38 1 4.8989 -2.0076 -10.9713 39 1 1.4099 -0.2714 -2.1088 40 1 2.0079 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702614414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:01 Heat of formation + Delta-G solvation = -59.583698 kcal Electronic energy + Delta-G solvation = -17553.405850 eV Core-core repulsion = 14788.289370 eV Total energy + Delta-G solvation = -2765.116480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90443 -36.64022 -35.50285 -33.45464 -31.93825 -31.02153 -28.75361 -27.04445 -25.71291 -23.78148 -22.37171 -21.41316 -20.47109 -19.93398 -17.01432 -16.36874 -16.02665 -15.94783 -15.42439 -14.60169 -14.57959 -14.20157 -13.91067 -13.75318 -13.22346 -13.10921 -12.44801 -12.21826 -12.05369 -11.90235 -11.77408 -11.63636 -11.51771 -11.36912 -10.89114 -10.78053 -10.60686 -10.46976 -9.93683 -9.72873 -9.34683 -9.06623 -8.78712 -8.35842 -8.32481 -6.00417 -4.02722 3.31744 3.38006 3.41819 3.72002 4.09194 4.15223 4.38716 4.46173 4.57059 4.85754 4.92193 5.11884 5.12912 5.16122 5.32322 5.35456 5.42788 5.52513 5.55122 5.59101 5.67334 5.77541 5.86523 5.89122 5.92228 6.26224 6.48457 6.65121 6.68522 6.70339 7.09831 7.20507 7.48190 7.66917 7.76862 7.81299 7.99617 8.42636 9.04463 9.61445 11.11047 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003565 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.856755 B = 7853.272500 C = 8045.024071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.510 5.510 3 C 0.031 3.969 4 C -0.114 4.114 5 C 0.138 3.862 6 O -0.547 6.547 7 C 0.034 3.966 8 N -0.692 5.692 9 C 0.060 3.940 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.006 3.994 21 H 0.028 0.972 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.385 0.615 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.335 0.665 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 6.867 18.980 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.234 5.234 3 C -0.097 4.097 4 C -0.153 4.153 5 C 0.095 3.905 6 O -0.354 6.354 7 C -0.096 4.096 8 N -0.323 5.323 9 C -0.068 4.068 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.123 4.123 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.234 0.766 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.371 6.901 19.858 21.698 hybrid contribution -1.384 -0.283 -2.163 2.584 sum -6.755 6.619 17.695 20.063 Atomic orbital electron populations 1.22543 0.87991 1.02405 1.00793 1.65370 1.08071 1.15109 1.34805 1.23156 0.94891 0.90293 1.01340 1.22331 0.97107 0.95476 1.00342 1.21814 0.87445 0.89866 0.91344 1.86464 1.62093 1.28210 1.58592 1.22708 1.02122 0.92224 0.92539 1.60528 1.33734 1.26706 1.11349 1.22137 1.00385 0.98945 0.85363 1.21632 1.00411 0.94695 0.97766 1.19067 0.96811 0.96997 0.88707 1.21251 1.45638 0.95517 0.93365 0.92649 1.25033 0.95298 0.96276 0.97931 1.69963 1.46775 1.26805 1.10072 0.86587 0.77823 0.83899 0.79660 1.20712 1.21222 1.19816 1.23887 0.95922 1.01339 0.91134 0.95335 0.91077 0.91231 0.89771 0.93720 0.89370 0.90262 0.76602 0.89908 0.94777 0.84707 0.91272 0.95728 0.93703 0.92426 0.96527 0.96869 0.93018 0.93305 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.53 60.07 0.57 0.67 16 2 N -0.51 -5.31 5.66 -238.23 -1.35 -6.66 16 3 C 0.03 0.28 6.49 -2.18 -0.01 0.27 16 4 C -0.11 -1.12 6.45 -25.35 -0.16 -1.29 16 5 C 0.14 1.53 1.21 -89.23 -0.11 1.42 16 6 O -0.55 -6.94 12.96 -35.23 -0.46 -7.39 16 7 C 0.03 0.41 4.60 -3.82 -0.02 0.39 16 8 N -0.69 -9.47 6.05 -113.78 -0.69 -10.16 16 9 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.01 0.06 4.73 -2.19 -0.01 0.05 16 21 H 0.03 0.23 7.97 -51.93 -0.41 -0.18 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.37 7.97 -51.93 -0.41 -0.04 16 26 H 0.09 0.92 7.98 -51.93 -0.41 0.50 16 27 H 0.08 0.68 7.71 -51.93 -0.40 0.28 16 28 H 0.38 4.31 8.66 45.56 0.39 4.71 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.34 4.28 7.50 -39.29 -0.29 3.99 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 0.51 7.41 -51.93 -0.38 0.12 16 40 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -30.85 321.38 -8.93 -39.78 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.54 Total: 2.25 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.46 Total: -13.01 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -1.30 Total: -43.19 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.46 Total: -7.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.85 -8.93 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702614414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.805 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds