Wall clock time and date at job start Mon Mar 30 2020 04:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48564 * 111.00077 * 2 1 4 4 C 1.54378 * 104.59344 * 200.96009 * 3 2 1 5 5 C 1.54262 * 105.06087 * 23.84761 * 4 3 2 6 6 O 1.42900 * 110.32703 * 241.00026 * 5 4 3 7 7 C 1.53010 * 110.32172 * 118.89786 * 5 4 3 8 8 N 1.46895 * 109.47023 * 185.00198 * 7 5 4 9 9 C 1.46904 * 111.00014 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.46983 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.48558 * 111.00240 * 244.57773 * 2 1 3 21 21 H 1.09001 * 109.46750 * 59.87384 * 1 2 3 22 22 H 1.08995 * 109.47142 * 179.87679 * 1 2 3 23 23 H 1.09003 * 109.46999 * 299.88025 * 1 2 3 24 24 H 1.08997 * 110.41479 * 82.18115 * 3 2 1 25 25 H 1.08997 * 110.40980 * 319.73588 * 3 2 1 26 26 H 1.09001 * 110.32184 * 264.95744 * 4 3 2 27 27 H 1.08998 * 110.32631 * 142.74972 * 4 3 2 28 28 H 0.96703 * 114.00003 * 178.57379 * 6 5 4 29 29 H 1.08999 * 109.46874 * 65.00063 * 7 5 4 30 30 H 1.09000 * 109.46689 * 304.99946 * 7 5 4 31 31 H 1.00901 * 111.00513 * 56.04075 * 8 7 5 32 32 H 1.08995 * 109.46789 * 59.99756 * 9 8 7 33 33 H 1.08998 * 109.46713 * 300.00198 * 9 8 7 34 34 H 1.09000 * 109.47849 * 59.99743 * 10 9 8 35 35 H 1.09007 * 109.47288 * 299.99336 * 10 9 8 36 36 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 37 37 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 38 38 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 39 39 H 1.08999 * 110.40799 * 40.26010 * 20 2 1 40 40 H 1.09001 * 110.41319 * 277.82551 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3870 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3584 6 8 4.3694 -0.9910 -0.8048 7 6 3.7948 0.2398 -2.8183 8 7 3.6728 -0.9923 -3.6088 9 6 4.0042 -0.7480 -5.0190 10 6 3.8654 -2.0511 -5.8086 11 6 4.2111 -1.7968 -7.2772 12 6 4.0738 -3.0801 -8.0551 13 1 3.7707 -3.9866 -7.5522 14 6 4.3411 -3.0984 -9.4076 15 7 4.7105 -1.9946 -10.0199 16 14 4.1785 -4.6909 -10.3703 17 1 2.7944 -4.8133 -10.8945 18 1 5.1381 -4.6844 -11.5036 19 1 4.4734 -5.8409 -9.4784 20 6 2.0015 -0.5954 -1.2526 21 1 -0.3633 0.5158 -0.8889 22 1 -0.3633 -1.0276 -0.0022 23 1 -0.3633 0.5120 0.8911 24 1 2.0080 1.7917 1.0120 25 1 1.4099 2.0212 -0.6602 26 1 4.1483 1.1748 0.2935 27 1 3.6938 2.0995 -1.1699 28 1 4.3963 -1.8387 -1.2693 29 1 4.8182 0.6101 -2.8781 30 1 3.1123 0.9930 -3.2118 31 1 2.7503 -1.3907 -3.5175 32 1 5.0291 -0.3848 -5.0937 33 1 3.3235 -0.0014 -5.4280 34 1 2.8403 -2.4139 -5.7338 35 1 4.5459 -2.7980 -5.3997 36 1 5.2363 -1.4341 -7.3516 37 1 3.5308 -1.0497 -7.6864 38 1 4.8989 -2.0076 -10.9713 39 1 1.4099 -0.2714 -2.1088 40 1 2.0079 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702614414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:00 Heat of formation + Delta-G solvation = -84.188259 kcal Electronic energy + Delta-G solvation = -17554.472784 eV Core-core repulsion = 14788.289370 eV Total energy + Delta-G solvation = -2766.183414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74982 -37.75621 -36.65828 -35.31416 -33.31683 -32.26145 -29.83416 -28.29670 -26.98694 -25.02282 -23.78568 -22.31567 -21.96739 -21.00448 -18.51062 -17.92615 -16.96536 -16.86659 -16.59594 -16.46772 -15.50440 -15.40263 -15.11913 -14.83308 -14.33868 -14.16310 -13.86530 -13.68027 -13.32866 -13.07960 -12.92845 -12.72577 -12.50953 -12.45872 -12.38745 -12.35440 -12.21711 -11.70882 -11.53827 -11.36264 -11.12218 -10.77741 -10.55853 -9.53024 -9.47209 -8.20749 -6.31838 1.40191 1.41559 1.52972 2.40733 2.96623 3.08678 3.12571 3.25917 3.60238 3.72658 3.95725 4.17207 4.22622 4.25594 4.38712 4.43268 4.46110 4.58861 4.60314 4.69345 4.74774 4.81748 4.87184 4.95373 4.97552 5.03079 5.10742 5.14984 5.23523 5.51221 5.73666 5.75027 5.85227 5.92932 5.99207 6.25599 6.37745 6.85388 6.88778 7.37656 8.91200 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003565 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.856755 B = 7853.272500 C = 8045.024071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.527 5.527 3 C 0.033 3.967 4 C -0.115 4.115 5 C 0.137 3.863 6 O -0.561 6.561 7 C 0.039 3.961 8 N -0.687 5.687 9 C 0.073 3.927 10 C -0.092 4.092 11 C 0.024 3.976 12 C -0.543 4.543 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.009 3.991 21 H 0.031 0.969 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.389 0.611 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.343 0.657 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.054 0.946 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.051 0.949 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 6.392 19.734 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.153 4.153 5 C 0.096 3.904 6 O -0.369 6.369 7 C -0.091 4.091 8 N -0.319 5.319 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.014 4.014 12 C -0.581 4.581 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.120 4.120 21 H 0.050 0.950 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.263 6.425 20.636 22.502 hybrid contribution -1.108 -0.097 -2.363 2.612 sum -7.371 6.327 18.273 20.694 Atomic orbital electron populations 1.22581 0.86901 1.02749 1.01495 1.65370 1.09254 1.15911 1.34601 1.23197 0.94282 0.89901 1.02136 1.22375 0.97618 0.95195 1.00135 1.21879 0.87590 0.90284 0.90695 1.86456 1.62670 1.28708 1.59053 1.22698 1.01984 0.91497 0.92889 1.60400 1.34421 1.27792 1.09311 1.21824 1.00104 0.96779 0.86866 1.21374 1.00523 0.96483 0.94643 1.18980 0.94703 0.95526 0.92147 1.21710 1.45677 0.96540 0.94190 0.92143 1.26000 0.94736 1.00056 0.99172 1.70094 1.47616 1.29216 1.10555 0.85436 0.78144 0.79378 0.78030 1.19702 1.20778 1.18705 1.23818 0.95451 1.01178 0.91536 0.95013 0.90974 0.90117 0.88818 0.92771 0.90105 0.88986 0.76164 0.90594 0.93896 0.83797 0.91995 0.95778 0.92971 0.92675 0.99073 0.99113 0.92772 0.93058 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 127.69 1.22 1.38 16 2 N -0.53 -10.03 5.66 -907.64 -5.14 -15.17 16 3 C 0.03 0.52 6.49 86.45 0.56 1.09 16 4 C -0.11 -2.07 6.45 31.49 0.20 -1.87 16 5 C 0.14 2.87 1.21 -9.90 -0.01 2.86 16 6 O -0.56 -13.68 12.96 -148.98 -1.93 -15.61 16 7 C 0.04 0.89 4.60 86.31 0.40 1.28 16 8 N -0.69 -17.92 6.05 -513.89 -3.11 -21.03 16 9 C 0.07 2.43 5.69 86.30 0.49 2.92 16 10 C -0.09 -3.74 5.41 30.59 0.17 -3.57 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 16 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 20 C 0.01 0.17 4.73 86.45 0.41 0.58 16 21 H 0.03 0.45 7.97 -2.39 -0.02 0.43 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 25 H 0.05 0.78 7.97 -2.39 -0.02 0.76 16 26 H 0.08 1.58 7.98 -2.39 -0.02 1.57 16 27 H 0.09 1.40 7.71 -2.39 -0.02 1.38 16 28 H 0.39 8.39 8.66 -74.06 -0.64 7.74 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.34 8.19 7.50 -89.69 -0.67 7.52 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 36 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.05 0.97 7.41 -2.39 -0.02 0.95 16 40 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 Total: -1.00 -65.23 321.38 -3.90 -69.14 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.31 Total: 17.68 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.28 Total: -24.48 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -7.96 Total: -93.14 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.93 Total: -15.61 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.23 -3.90 -69.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702614414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.050 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds