Wall clock time and date at job start Mon Mar 30 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47284 * 2 1 4 4 C 1.42902 * 113.99974 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47085 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47412 * 173.94309 * 5 4 3 7 7 C 1.52998 * 109.47034 * 53.93946 * 5 4 3 8 8 N 1.46905 * 109.47065 * 183.77248 * 7 5 4 9 9 N 1.46904 * 109.46966 * 293.94518 * 5 4 3 10 10 C 1.46902 * 110.99542 * 294.83531 * 9 5 4 11 11 C 1.50697 * 109.47350 * 295.17015 * 10 9 5 12 12 H 1.08012 * 119.99715 * 354.96977 * 11 10 9 13 13 C 1.37876 * 120.00151 * 174.69039 * 11 10 9 14 14 N 1.31507 * 120.00293 * 0.27769 * 13 11 10 15 15 Si 1.86803 * 119.99847 * 180.27854 * 13 11 10 16 16 H 1.48502 * 109.47218 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47168 * 119.99917 * 15 13 11 18 18 H 1.48497 * 109.47001 * 240.00072 * 15 13 11 19 19 C 1.46896 * 111.00321 * 58.78544 * 9 5 4 20 20 C 1.52996 * 117.50228 * 241.37113 * 19 9 5 21 21 C 1.52999 * 117.50092 * 172.70852 * 19 9 5 22 22 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47628 * 300.00408 * 1 2 3 24 24 H 1.09002 * 109.47036 * 60.00537 * 1 2 3 25 25 H 1.08998 * 109.47628 * 239.99591 * 2 1 3 26 26 H 1.09003 * 109.46918 * 120.00237 * 2 1 3 27 27 H 1.08996 * 109.46897 * 60.00178 * 4 3 2 28 28 H 1.08995 * 109.47213 * 299.99912 * 4 3 2 29 29 H 1.08997 * 109.47667 * 303.76989 * 7 5 4 30 30 H 1.08997 * 109.46859 * 63.77321 * 7 5 4 31 31 H 1.00896 * 111.00083 * 61.47747 * 8 7 5 32 32 H 1.00903 * 111.00067 * 185.44214 * 8 7 5 33 33 H 1.09006 * 109.46713 * 175.17726 * 10 9 5 34 34 H 1.09004 * 109.47362 * 55.17498 * 10 9 5 35 35 H 0.96999 * 120.00405 * 179.97438 * 14 13 11 36 36 H 1.08999 * 115.54611 * 27.04133 * 19 9 5 37 37 H 1.09001 * 117.49900 * 359.97438 * 20 19 9 38 38 H 1.09004 * 117.50127 * 145.02380 * 20 19 9 39 39 H 1.09006 * 117.49832 * 214.98370 * 21 19 9 40 40 H 1.08999 * 117.49580 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 1 4.9064 3.0258 0.1100 7 6 3.1361 3.6496 1.1672 8 7 3.4425 5.0854 1.1149 9 7 3.4091 3.5567 -1.2646 10 6 4.1439 2.9805 -2.3987 11 6 5.6077 3.3150 -2.2709 12 1 5.9459 3.9646 -1.4770 13 6 6.5160 2.7872 -3.1640 14 7 6.1043 1.9963 -4.1306 15 14 8.3315 3.1957 -3.0008 16 1 8.5333 4.0990 -1.8396 17 1 9.1038 1.9443 -2.7939 18 1 8.8008 3.8680 -4.2390 19 6 1.9584 3.4321 -1.4594 20 6 1.4744 2.6488 -2.6812 21 6 1.3387 4.1731 -2.6459 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8340 0.9764 -0.8892 28 1 3.8333 0.9767 0.8908 29 1 2.0582 3.5054 1.0948 30 1 3.4957 3.2355 2.1091 31 1 3.0976 5.4979 0.2612 32 1 3.0728 5.5637 1.9228 33 1 3.7568 3.3938 -3.3301 34 1 4.0174 1.8978 -2.4013 35 1 6.7432 1.6253 -4.7591 36 1 1.3664 3.3582 -0.5472 37 1 2.2323 2.2262 -3.3408 38 1 0.5635 2.0599 -2.5731 39 1 0.3386 4.5864 -2.5144 40 1 2.0074 4.7527 -3.2822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704219401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:16 Heat of formation + Delta-G solvation = -10.203764 kcal Electronic energy + Delta-G solvation = -19140.296381 eV Core-core repulsion = 16377.321176 eV Total energy + Delta-G solvation = -2762.975205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06578 -36.88912 -34.79919 -33.13321 -31.87994 -30.86168 -28.29629 -26.30986 -24.16634 -22.69637 -22.39142 -21.49842 -20.99690 -18.24937 -16.57457 -16.24105 -15.95732 -15.37512 -15.09972 -14.75584 -14.44674 -13.88847 -13.55517 -13.31410 -12.61091 -12.49723 -12.26922 -12.03554 -11.73460 -11.52276 -11.10695 -10.92727 -10.90070 -10.84702 -10.60949 -10.49488 -10.30706 -9.95294 -9.76020 -9.45840 -9.19360 -8.89854 -8.39394 -8.04284 -6.95617 -5.99982 -4.00527 3.33023 3.40998 3.47401 4.05355 4.43645 4.58305 4.96880 5.18422 5.19827 5.35090 5.35779 5.51448 5.58934 5.66332 5.74152 5.76054 5.85334 5.88398 5.92940 6.02984 6.09499 6.11540 6.18179 6.30552 6.37558 6.53118 6.79034 6.81421 6.91280 7.38755 7.42591 7.59914 7.71114 7.87843 8.05353 8.16651 8.27498 8.62625 9.10191 9.64064 11.10477 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.008024 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.536664 B = 3488.570855 C = 3687.308127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.376 6.376 4 C 0.030 3.970 5 C 0.103 3.897 6 H 0.110 0.890 7 C 0.074 3.926 8 N -0.842 5.842 9 N -0.493 5.493 10 C 0.190 3.810 11 C -0.506 4.506 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.285 1.285 19 C 0.046 3.954 20 C -0.211 4.211 21 C -0.191 4.191 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.354 0.646 32 H 0.324 0.676 33 H 0.029 0.971 34 H 0.002 0.998 35 H 0.259 0.741 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -1.614 8.571 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.296 6.296 4 C -0.048 4.048 5 C -0.006 4.006 6 H 0.127 0.873 7 C -0.057 4.057 8 N -0.372 5.372 9 N -0.214 5.214 10 C 0.065 3.935 11 C -0.545 4.545 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.064 4.064 20 C -0.250 4.250 21 C -0.229 4.229 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.135 0.865 33 H 0.047 0.953 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.085 -1.271 8.462 12.480 hybrid contribution -0.049 -1.009 -0.253 1.041 sum -9.133 -2.280 8.209 12.490 Atomic orbital electron populations 1.21703 0.94430 1.01562 1.02703 1.22344 0.94960 0.85299 0.99506 1.87948 1.21594 1.24720 1.95297 1.23332 0.80714 1.00306 1.00460 1.21776 1.01168 0.87705 0.90001 0.87264 1.21748 0.97438 0.89115 0.97407 1.58542 1.68199 1.03062 1.07365 1.62060 1.00873 1.55305 1.03172 1.19840 0.92735 0.93088 0.87847 1.21293 0.91378 1.28415 1.13396 0.91529 1.24972 0.98999 0.95219 0.95385 1.69967 1.34382 1.32985 1.16586 0.86496 0.85157 0.78040 0.78098 1.19503 1.21288 1.21130 1.22564 0.90780 1.01055 0.91957 1.23356 1.02917 0.93614 1.05091 1.23054 1.00787 0.94945 1.04076 0.91784 0.92353 0.91969 0.93770 0.94324 0.91758 0.94321 0.95270 0.92285 0.83193 0.86490 0.95293 0.98046 0.93123 0.87085 0.88107 0.90679 0.90194 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.77 6.66 37.16 0.25 1.01 16 3 O -0.38 -6.12 6.19 -35.23 -0.22 -6.34 16 4 C 0.03 0.54 5.33 37.16 0.20 0.74 16 5 C 0.10 1.97 2.46 -67.71 -0.17 1.80 16 6 H 0.11 2.37 6.75 -51.93 -0.35 2.02 16 7 C 0.07 1.19 5.88 -3.82 -0.02 1.17 16 8 N -0.84 -13.27 9.57 -10.37 -0.10 -13.36 16 9 N -0.49 -10.28 3.92 -220.15 -0.86 -11.14 16 10 C 0.19 4.78 3.17 -4.98 -0.02 4.77 16 11 C -0.51 -13.98 8.32 -34.44 -0.29 -14.27 16 12 H 0.07 1.86 7.25 -52.48 -0.38 1.48 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.05 0.85 3.89 -67.72 -0.26 0.59 16 20 C -0.21 -3.92 9.20 -26.70 -0.25 -4.16 16 21 C -0.19 -3.37 10.00 -26.69 -0.27 -3.64 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.34 6.17 -51.93 -0.32 1.02 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.47 5.72 -51.93 -0.30 0.17 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.35 5.92 8.34 -39.29 -0.33 5.59 16 32 H 0.32 4.17 9.08 -39.29 -0.36 3.81 16 33 H 0.03 0.80 6.32 -51.93 -0.33 0.47 16 34 H 0.00 0.05 5.64 -51.93 -0.29 -0.24 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.11 1.97 5.06 -51.93 -0.26 1.71 16 37 H 0.10 2.19 5.89 -51.93 -0.31 1.88 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.79 7.72 -51.93 -0.40 1.39 16 LS Contribution 309.98 15.07 4.67 4.67 Total: -1.00 -28.71 309.98 -7.89 -36.60 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.56 Total: 10.39 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.54 Total: -11.81 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.23 Total: -50.21 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.22 Total: -6.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.71 -7.89 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704219401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.401 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds