Wall clock time and date at job start Mon Mar 30 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47284 * 2 1 4 4 C 1.42902 * 113.99974 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47085 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47412 * 173.94309 * 5 4 3 7 7 C 1.52998 * 109.47034 * 53.93946 * 5 4 3 8 8 N 1.46905 * 109.47065 * 183.77248 * 7 5 4 9 9 N 1.46904 * 109.46966 * 293.94518 * 5 4 3 10 10 C 1.46902 * 110.99542 * 294.83531 * 9 5 4 11 11 C 1.50697 * 109.47350 * 295.17015 * 10 9 5 12 12 H 1.08012 * 119.99715 * 354.96977 * 11 10 9 13 13 C 1.37876 * 120.00151 * 174.69039 * 11 10 9 14 14 N 1.31507 * 120.00293 * 0.27769 * 13 11 10 15 15 Si 1.86803 * 119.99847 * 180.27854 * 13 11 10 16 16 H 1.48502 * 109.47218 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47168 * 119.99917 * 15 13 11 18 18 H 1.48497 * 109.47001 * 240.00072 * 15 13 11 19 19 C 1.46896 * 111.00321 * 58.78544 * 9 5 4 20 20 C 1.52996 * 117.50228 * 241.37113 * 19 9 5 21 21 C 1.52999 * 117.50092 * 172.70852 * 19 9 5 22 22 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47628 * 300.00408 * 1 2 3 24 24 H 1.09002 * 109.47036 * 60.00537 * 1 2 3 25 25 H 1.08998 * 109.47628 * 239.99591 * 2 1 3 26 26 H 1.09003 * 109.46918 * 120.00237 * 2 1 3 27 27 H 1.08996 * 109.46897 * 60.00178 * 4 3 2 28 28 H 1.08995 * 109.47213 * 299.99912 * 4 3 2 29 29 H 1.08997 * 109.47667 * 303.76989 * 7 5 4 30 30 H 1.08997 * 109.46859 * 63.77321 * 7 5 4 31 31 H 1.00896 * 111.00083 * 61.47747 * 8 7 5 32 32 H 1.00903 * 111.00067 * 185.44214 * 8 7 5 33 33 H 1.09006 * 109.46713 * 175.17726 * 10 9 5 34 34 H 1.09004 * 109.47362 * 55.17498 * 10 9 5 35 35 H 0.96999 * 120.00405 * 179.97438 * 14 13 11 36 36 H 1.08999 * 115.54611 * 27.04133 * 19 9 5 37 37 H 1.09001 * 117.49900 * 359.97438 * 20 19 9 38 38 H 1.09004 * 117.50127 * 145.02380 * 20 19 9 39 39 H 1.09006 * 117.49832 * 214.98370 * 21 19 9 40 40 H 1.08999 * 117.49580 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 1 4.9064 3.0258 0.1100 7 6 3.1361 3.6496 1.1672 8 7 3.4425 5.0854 1.1149 9 7 3.4091 3.5567 -1.2646 10 6 4.1439 2.9805 -2.3987 11 6 5.6077 3.3150 -2.2709 12 1 5.9459 3.9646 -1.4770 13 6 6.5160 2.7872 -3.1640 14 7 6.1043 1.9963 -4.1306 15 14 8.3315 3.1957 -3.0008 16 1 8.5333 4.0990 -1.8396 17 1 9.1038 1.9443 -2.7939 18 1 8.8008 3.8680 -4.2390 19 6 1.9584 3.4321 -1.4594 20 6 1.4744 2.6488 -2.6812 21 6 1.3387 4.1731 -2.6459 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8340 0.9764 -0.8892 28 1 3.8333 0.9767 0.8908 29 1 2.0582 3.5054 1.0948 30 1 3.4957 3.2355 2.1091 31 1 3.0976 5.4979 0.2612 32 1 3.0728 5.5637 1.9228 33 1 3.7568 3.3938 -3.3301 34 1 4.0174 1.8978 -2.4013 35 1 6.7432 1.6253 -4.7591 36 1 1.3664 3.3582 -0.5472 37 1 2.2323 2.2262 -3.3408 38 1 0.5635 2.0599 -2.5731 39 1 0.3386 4.5864 -2.5144 40 1 2.0074 4.7527 -3.2822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704219401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:16 Heat of formation + Delta-G solvation = -30.772511 kcal Electronic energy + Delta-G solvation = -19141.188309 eV Core-core repulsion = 16377.321176 eV Total energy + Delta-G solvation = -2763.867133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59325 -38.26147 -36.20152 -35.10911 -33.45810 -32.10626 -29.90080 -28.17860 -25.69642 -24.30450 -23.68407 -23.00608 -22.50764 -19.90687 -18.39821 -17.82482 -17.34912 -16.76167 -16.56245 -16.37967 -16.20273 -15.32112 -15.03395 -14.62764 -14.27781 -13.80616 -13.73327 -13.59415 -13.26891 -12.94716 -12.77720 -12.62975 -12.38967 -12.27206 -12.20389 -12.12730 -11.91555 -11.60267 -11.51259 -11.00099 -10.98174 -10.59322 -10.38572 -9.29905 -8.65676 -8.17470 -6.26219 1.39388 1.41023 1.54764 2.41332 2.78115 2.99820 3.15029 3.49933 3.84053 4.10182 4.17412 4.18945 4.21713 4.29046 4.43676 4.46222 4.49415 4.52605 4.62354 4.74487 4.79469 4.84950 4.90568 5.04409 5.07395 5.21013 5.25657 5.28798 5.38094 5.40273 5.46752 5.70607 6.13283 6.27876 6.42452 6.50261 6.77301 6.88693 6.93938 7.43426 8.92759 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.008024 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.536664 B = 3488.570855 C = 3687.308127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.379 6.379 4 C 0.043 3.957 5 C 0.100 3.900 6 H 0.078 0.922 7 C 0.087 3.913 8 N -0.851 5.851 9 N -0.496 5.496 10 C 0.215 3.785 11 C -0.518 4.518 12 H 0.060 0.940 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.962 3.038 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.281 1.281 19 C 0.048 3.952 20 C -0.212 4.212 21 C -0.178 4.178 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.348 0.652 32 H 0.344 0.656 33 H -0.003 1.003 34 H -0.025 1.025 35 H 0.262 0.738 36 H 0.130 0.870 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -1.245 10.427 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 O -0.298 6.298 4 C -0.036 4.036 5 C -0.009 4.009 6 H 0.096 0.904 7 C -0.044 4.044 8 N -0.382 5.382 9 N -0.217 5.217 10 C 0.089 3.911 11 C -0.556 4.556 12 H 0.079 0.921 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.061 4.061 20 C -0.251 4.251 21 C -0.216 4.216 22 H 0.105 0.895 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.015 0.985 34 H -0.007 1.007 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.069 -0.894 10.347 14.465 hybrid contribution 0.201 -1.158 -0.821 1.434 sum -9.868 -2.052 9.525 13.868 Atomic orbital electron populations 1.21688 0.92119 1.03121 1.02739 1.22581 0.96763 0.83960 0.99554 1.87908 1.20106 1.26540 1.95277 1.23015 0.81913 0.99243 0.99464 1.21754 0.99886 0.89014 0.90275 0.90351 1.21608 0.97395 0.89059 0.96333 1.58490 1.68662 1.03024 1.08010 1.61954 1.02156 1.55122 1.02468 1.19344 0.92235 0.91225 0.88311 1.21550 0.92806 1.28165 1.13112 0.92149 1.25819 1.03595 0.95018 0.94970 1.70093 1.35946 1.33995 1.17402 0.85439 0.79609 0.78030 0.78198 1.18862 1.20523 1.20656 1.22624 0.89353 1.01417 0.92735 1.23207 1.02770 0.94647 1.04486 1.23104 1.01987 0.93850 1.02677 0.89542 0.91405 0.92734 0.95351 0.92698 0.95793 0.92230 0.94384 0.90568 0.83854 0.84324 0.98475 1.00742 0.92956 0.85241 0.92102 0.88372 0.86525 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.05 1.25 6.66 71.98 0.48 1.72 16 3 O -0.38 -11.87 6.19 -148.98 -0.92 -12.79 16 4 C 0.04 1.53 5.33 71.98 0.38 1.91 16 5 C 0.10 3.82 2.46 44.91 0.11 3.93 16 6 H 0.08 3.48 6.75 -2.39 -0.02 3.46 16 7 C 0.09 2.63 5.88 86.30 0.51 3.13 16 8 N -0.85 -25.18 9.57 -186.72 -1.79 -26.96 16 9 N -0.50 -21.06 3.92 -850.41 -3.33 -24.39 16 10 C 0.21 11.39 3.17 85.56 0.27 11.66 16 11 C -0.52 -29.59 8.32 25.60 0.21 -29.38 16 12 H 0.06 3.46 7.25 -2.90 -0.02 3.44 16 13 C 0.00 0.21 5.46 84.66 0.46 0.68 16 14 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 15 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 16 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 C 0.05 1.74 3.89 44.91 0.17 1.92 16 20 C -0.21 -7.94 9.20 30.62 0.28 -7.66 16 21 C -0.18 -6.15 10.00 30.62 0.31 -5.85 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.02 1.05 6.17 -2.39 -0.01 1.04 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.10 5.72 -2.39 -0.01 1.08 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.35 11.12 8.34 -89.70 -0.75 10.37 16 32 H 0.34 7.91 9.08 -89.69 -0.81 7.09 16 33 H 0.00 -0.16 6.32 -2.38 -0.02 -0.18 16 34 H -0.03 -1.45 5.64 -2.39 -0.01 -1.46 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.13 4.28 5.06 -2.39 -0.01 4.27 16 37 H 0.06 2.79 5.89 -2.39 -0.01 2.78 16 38 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 39 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 40 H 0.07 2.73 7.72 -2.39 -0.02 2.72 16 Total: -1.00 -63.80 309.98 -0.33 -64.13 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.53 Total: 29.15 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 3.93 Total: -19.98 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.84 Total: -107.77 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.92 Total: -12.79 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -63.80 -0.33 -64.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704219401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.354 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds